Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3091 and EX28DRAFT_3092 are separated by 10 nucleotides EX28DRAFT_3092 and EX28DRAFT_3093 are separated by 10 nucleotides EX28DRAFT_3093 and EX28DRAFT_3094 overlap by 8 nucleotides
EX28DRAFT_3091: EX28DRAFT_3091 - Urease accessory protein UreH, at 403,011 to 403,838
_3091
EX28DRAFT_3092: EX28DRAFT_3092 - urease, gamma subunit, at 403,849 to 404,151
_3092
EX28DRAFT_3093: EX28DRAFT_3093 - urease, beta subunit, at 404,162 to 404,476
_3093
EX28DRAFT_3094: EX28DRAFT_3094 - urease, alpha subunit, at 404,469 to 406,172
_3094
Position (kb) 404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 403.176 kb on + strand, within EX28DRAFT_3091 at 403.177 kb on - strand, within EX28DRAFT_3091 at 403.528 kb on + strand, within EX28DRAFT_3091 at 403.529 kb on - strand, within EX28DRAFT_3091 at 403.623 kb on + strand, within EX28DRAFT_3091 at 403.624 kb on - strand, within EX28DRAFT_3091 at 403.836 kb on + strand at 403.836 kb on + strand at 403.837 kb on - strand at 403.837 kb on - strand at 403.942 kb on + strand, within EX28DRAFT_3092 at 404.288 kb on + strand, within EX28DRAFT_3093 at 404.289 kb on - strand, within EX28DRAFT_3093 at 404.451 kb on + strand at 404.477 kb on + strand at 404.494 kb on - strand at 404.502 kb on - strand at 404.502 kb on - strand at 404.525 kb on + strand at 404.526 kb on - strand at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.666 kb on - strand, within EX28DRAFT_3094 at 405.189 kb on - strand, within EX28DRAFT_3094 at 405.344 kb on + strand, within EX28DRAFT_3094 at 405.363 kb on - strand, within EX28DRAFT_3094 at 405.379 kb on - strand, within EX28DRAFT_3094
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 403,176 + EX28DRAFT_3091 0.20 -0.7 403,177 - EX28DRAFT_3091 0.20 -0.5 403,528 + EX28DRAFT_3091 0.62 +0.1 403,529 - EX28DRAFT_3091 0.63 -1.1 403,623 + EX28DRAFT_3091 0.74 +1.7 403,624 - EX28DRAFT_3091 0.74 -1.6 403,836 + -0.1 403,836 + +0.7 403,837 - -0.3 403,837 - +0.7 403,942 + EX28DRAFT_3092 0.31 +4.6 404,288 + EX28DRAFT_3093 0.40 -0.1 404,289 - EX28DRAFT_3093 0.40 -1.9 404,451 + -1.8 404,477 + +0.2 404,494 - -0.4 404,502 - -0.5 404,502 - -3.6 404,525 + +0.5 404,526 - +0.8 404,665 + EX28DRAFT_3094 0.12 +0.6 404,665 + EX28DRAFT_3094 0.12 -1.1 404,665 + EX28DRAFT_3094 0.12 +0.3 404,665 + EX28DRAFT_3094 0.12 +0.3 404,665 + EX28DRAFT_3094 0.12 +0.6 404,666 - EX28DRAFT_3094 0.12 -0.4 405,189 - EX28DRAFT_3094 0.42 -0.2 405,344 + EX28DRAFT_3094 0.51 -0.5 405,363 - EX28DRAFT_3094 0.52 +0.4 405,379 - EX28DRAFT_3094 0.53 +2.3
Or see this region's nucleotide sequence