Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3029

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3028 and EX28DRAFT_3029 are separated by 160 nucleotidesEX28DRAFT_3029 and EX28DRAFT_3030 are separated by 73 nucleotidesEX28DRAFT_3030 and EX28DRAFT_3031 overlap by 11 nucleotides EX28DRAFT_3028: EX28DRAFT_3028 - Glutathione S-transferase, at 340,028 to 340,894 _3028 EX28DRAFT_3029: EX28DRAFT_3029 - hypothetical protein, at 341,055 to 341,387 _3029 EX28DRAFT_3030: EX28DRAFT_3030 - Esterase/lipase, at 341,461 to 342,363 _3030 EX28DRAFT_3031: EX28DRAFT_3031 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 342,353 to 343,249 _3031 Position (kb) 341 342Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 340.111 kb on + strandat 340.170 kb on - strand, within EX28DRAFT_3028at 340.388 kb on - strand, within EX28DRAFT_3028at 340.520 kb on + strand, within EX28DRAFT_3028at 340.520 kb on + strand, within EX28DRAFT_3028at 340.521 kb on - strand, within EX28DRAFT_3028at 340.521 kb on - strand, within EX28DRAFT_3028at 340.526 kb on + strand, within EX28DRAFT_3028at 340.526 kb on + strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.641 kb on - strand, within EX28DRAFT_3028at 340.641 kb on - strand, within EX28DRAFT_3028at 340.734 kb on - strand, within EX28DRAFT_3028at 340.739 kb on - strand, within EX28DRAFT_3028at 340.870 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.880 kb on - strandat 340.880 kb on - strandat 340.892 kb on + strandat 340.950 kb on + strandat 340.951 kb on - strandat 340.970 kb on + strandat 340.983 kb on - strandat 341.055 kb on - strandat 341.066 kb on + strandat 341.066 kb on + strandat 341.253 kb on - strand, within EX28DRAFT_3029at 341.514 kb on + strandat 341.514 kb on + strandat 341.514 kb on + strandat 341.514 kb on + strandat 341.515 kb on - strandat 341.557 kb on + strand, within EX28DRAFT_3030at 341.592 kb on - strand, within EX28DRAFT_3030at 341.621 kb on + strand, within EX28DRAFT_3030at 341.622 kb on - strand, within EX28DRAFT_3030at 341.671 kb on - strand, within EX28DRAFT_3030at 341.687 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.800 kb on + strand, within EX28DRAFT_3030at 341.927 kb on - strand, within EX28DRAFT_3030at 342.035 kb on - strand, within EX28DRAFT_3030at 342.035 kb on - strand, within EX28DRAFT_3030at 342.080 kb on + strand, within EX28DRAFT_3030at 342.168 kb on + strand, within EX28DRAFT_3030at 342.171 kb on - strand, within EX28DRAFT_3030at 342.215 kb on + strand, within EX28DRAFT_3030at 342.215 kb on + strand, within EX28DRAFT_3030at 342.216 kb on - strand, within EX28DRAFT_3030at 342.216 kb on - strand, within EX28DRAFT_3030at 342.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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340,111 + -0.8
340,170 - EX28DRAFT_3028 0.16 +1.0
340,388 - EX28DRAFT_3028 0.42 -0.2
340,520 + EX28DRAFT_3028 0.57 +0.9
340,520 + EX28DRAFT_3028 0.57 +2.3
340,521 - EX28DRAFT_3028 0.57 -1.0
340,521 - EX28DRAFT_3028 0.57 +0.2
340,526 + EX28DRAFT_3028 0.57 -3.8
340,526 + EX28DRAFT_3028 0.57 +1.0
340,527 - EX28DRAFT_3028 0.58 +0.2
340,527 - EX28DRAFT_3028 0.58 +1.2
340,527 - EX28DRAFT_3028 0.58 +0.1
340,640 + EX28DRAFT_3028 0.71 +0.1
340,640 + EX28DRAFT_3028 0.71 +1.3
340,640 + EX28DRAFT_3028 0.71 -1.8
340,640 + EX28DRAFT_3028 0.71 -3.8
340,641 - EX28DRAFT_3028 0.71 -0.9
340,641 - EX28DRAFT_3028 0.71 +0.0
340,734 - EX28DRAFT_3028 0.81 -2.8
340,739 - EX28DRAFT_3028 0.82 -0.2
340,870 + +0.8
340,879 + +1.1
340,879 + -0.3
340,879 + +1.4
340,879 + +0.6
340,880 - -3.7
340,880 - +0.3
340,892 + -1.5
340,950 + +0.4
340,951 - +0.5
340,970 + -0.5
340,983 - -0.1
341,055 - -3.3
341,066 + -0.7
341,066 + +0.3
341,253 - EX28DRAFT_3029 0.59 -1.3
341,514 + +0.1
341,514 + -2.5
341,514 + -2.0
341,514 + +0.3
341,515 - -0.6
341,557 + EX28DRAFT_3030 0.11 -2.9
341,592 - EX28DRAFT_3030 0.15 -0.3
341,621 + EX28DRAFT_3030 0.18 -0.2
341,622 - EX28DRAFT_3030 0.18 -0.3
341,671 - EX28DRAFT_3030 0.23 -1.3
341,687 + EX28DRAFT_3030 0.25 +0.6
341,750 + EX28DRAFT_3030 0.32 -0.5
341,750 + EX28DRAFT_3030 0.32 +0.3
341,750 + EX28DRAFT_3030 0.32 +0.8
341,751 - EX28DRAFT_3030 0.32 -0.3
341,751 - EX28DRAFT_3030 0.32 -2.0
341,751 - EX28DRAFT_3030 0.32 -0.3
341,751 - EX28DRAFT_3030 0.32 -1.1
341,751 - EX28DRAFT_3030 0.32 -0.4
341,800 + EX28DRAFT_3030 0.38 +1.3
341,927 - EX28DRAFT_3030 0.52 -4.5
342,035 - EX28DRAFT_3030 0.64 +0.0
342,035 - EX28DRAFT_3030 0.64 +0.6
342,080 + EX28DRAFT_3030 0.69 +0.1
342,168 + EX28DRAFT_3030 0.78 -2.2
342,171 - EX28DRAFT_3030 0.79 -0.1
342,215 + EX28DRAFT_3030 0.83 +0.3
342,215 + EX28DRAFT_3030 0.83 -0.3
342,216 - EX28DRAFT_3030 0.84 +0.4
342,216 - EX28DRAFT_3030 0.84 +0.8
342,352 - +0.3

Or see this region's nucleotide sequence