Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3028 and EX28DRAFT_3029 are separated by 160 nucleotides EX28DRAFT_3029 and EX28DRAFT_3030 are separated by 73 nucleotides EX28DRAFT_3030 and EX28DRAFT_3031 overlap by 11 nucleotides
EX28DRAFT_3028: EX28DRAFT_3028 - Glutathione S-transferase, at 340,028 to 340,894
_3028
EX28DRAFT_3029: EX28DRAFT_3029 - hypothetical protein, at 341,055 to 341,387
_3029
EX28DRAFT_3030: EX28DRAFT_3030 - Esterase/lipase, at 341,461 to 342,363
_3030
EX28DRAFT_3031: EX28DRAFT_3031 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 342,353 to 343,249
_3031
Position (kb)
341
342 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 340.111 kb on + strand at 340.170 kb on - strand, within EX28DRAFT_3028 at 340.388 kb on - strand, within EX28DRAFT_3028 at 340.520 kb on + strand, within EX28DRAFT_3028 at 340.520 kb on + strand, within EX28DRAFT_3028 at 340.521 kb on - strand, within EX28DRAFT_3028 at 340.521 kb on - strand, within EX28DRAFT_3028 at 340.526 kb on + strand, within EX28DRAFT_3028 at 340.526 kb on + strand, within EX28DRAFT_3028 at 340.527 kb on - strand, within EX28DRAFT_3028 at 340.527 kb on - strand, within EX28DRAFT_3028 at 340.527 kb on - strand, within EX28DRAFT_3028 at 340.640 kb on + strand, within EX28DRAFT_3028 at 340.640 kb on + strand, within EX28DRAFT_3028 at 340.640 kb on + strand, within EX28DRAFT_3028 at 340.640 kb on + strand, within EX28DRAFT_3028 at 340.641 kb on - strand, within EX28DRAFT_3028 at 340.641 kb on - strand, within EX28DRAFT_3028 at 340.734 kb on - strand, within EX28DRAFT_3028 at 340.739 kb on - strand, within EX28DRAFT_3028 at 340.870 kb on + strand at 340.879 kb on + strand at 340.879 kb on + strand at 340.879 kb on + strand at 340.879 kb on + strand at 340.880 kb on - strand at 340.880 kb on - strand at 340.892 kb on + strand at 340.950 kb on + strand at 340.951 kb on - strand at 340.970 kb on + strand at 340.983 kb on - strand at 341.055 kb on - strand at 341.066 kb on + strand at 341.066 kb on + strand at 341.253 kb on - strand, within EX28DRAFT_3029 at 341.514 kb on + strand at 341.514 kb on + strand at 341.514 kb on + strand at 341.514 kb on + strand at 341.515 kb on - strand at 341.557 kb on + strand, within EX28DRAFT_3030 at 341.592 kb on - strand, within EX28DRAFT_3030 at 341.621 kb on + strand, within EX28DRAFT_3030 at 341.622 kb on - strand, within EX28DRAFT_3030 at 341.671 kb on - strand, within EX28DRAFT_3030 at 341.687 kb on + strand, within EX28DRAFT_3030 at 341.750 kb on + strand, within EX28DRAFT_3030 at 341.750 kb on + strand, within EX28DRAFT_3030 at 341.750 kb on + strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.800 kb on + strand, within EX28DRAFT_3030 at 341.927 kb on - strand, within EX28DRAFT_3030 at 342.035 kb on - strand, within EX28DRAFT_3030 at 342.035 kb on - strand, within EX28DRAFT_3030 at 342.080 kb on + strand, within EX28DRAFT_3030 at 342.168 kb on + strand, within EX28DRAFT_3030 at 342.171 kb on - strand, within EX28DRAFT_3030 at 342.215 kb on + strand, within EX28DRAFT_3030 at 342.215 kb on + strand, within EX28DRAFT_3030 at 342.216 kb on - strand, within EX28DRAFT_3030 at 342.216 kb on - strand, within EX28DRAFT_3030 at 342.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 340,111 + -0.8 340,170 - EX28DRAFT_3028 0.16 +1.0 340,388 - EX28DRAFT_3028 0.42 -0.2 340,520 + EX28DRAFT_3028 0.57 +0.9 340,520 + EX28DRAFT_3028 0.57 +2.3 340,521 - EX28DRAFT_3028 0.57 -1.0 340,521 - EX28DRAFT_3028 0.57 +0.2 340,526 + EX28DRAFT_3028 0.57 -3.8 340,526 + EX28DRAFT_3028 0.57 +1.0 340,527 - EX28DRAFT_3028 0.58 +0.2 340,527 - EX28DRAFT_3028 0.58 +1.2 340,527 - EX28DRAFT_3028 0.58 +0.1 340,640 + EX28DRAFT_3028 0.71 +0.1 340,640 + EX28DRAFT_3028 0.71 +1.3 340,640 + EX28DRAFT_3028 0.71 -1.8 340,640 + EX28DRAFT_3028 0.71 -3.8 340,641 - EX28DRAFT_3028 0.71 -0.9 340,641 - EX28DRAFT_3028 0.71 +0.0 340,734 - EX28DRAFT_3028 0.81 -2.8 340,739 - EX28DRAFT_3028 0.82 -0.2 340,870 + +0.8 340,879 + +1.1 340,879 + -0.3 340,879 + +1.4 340,879 + +0.6 340,880 - -3.7 340,880 - +0.3 340,892 + -1.5 340,950 + +0.4 340,951 - +0.5 340,970 + -0.5 340,983 - -0.1 341,055 - -3.3 341,066 + -0.7 341,066 + +0.3 341,253 - EX28DRAFT_3029 0.59 -1.3 341,514 + +0.1 341,514 + -2.5 341,514 + -2.0 341,514 + +0.3 341,515 - -0.6 341,557 + EX28DRAFT_3030 0.11 -2.9 341,592 - EX28DRAFT_3030 0.15 -0.3 341,621 + EX28DRAFT_3030 0.18 -0.2 341,622 - EX28DRAFT_3030 0.18 -0.3 341,671 - EX28DRAFT_3030 0.23 -1.3 341,687 + EX28DRAFT_3030 0.25 +0.6 341,750 + EX28DRAFT_3030 0.32 -0.5 341,750 + EX28DRAFT_3030 0.32 +0.3 341,750 + EX28DRAFT_3030 0.32 +0.8 341,751 - EX28DRAFT_3030 0.32 -0.3 341,751 - EX28DRAFT_3030 0.32 -2.0 341,751 - EX28DRAFT_3030 0.32 -0.3 341,751 - EX28DRAFT_3030 0.32 -1.1 341,751 - EX28DRAFT_3030 0.32 -0.4 341,800 + EX28DRAFT_3030 0.38 +1.3 341,927 - EX28DRAFT_3030 0.52 -4.5 342,035 - EX28DRAFT_3030 0.64 +0.0 342,035 - EX28DRAFT_3030 0.64 +0.6 342,080 + EX28DRAFT_3030 0.69 +0.1 342,168 + EX28DRAFT_3030 0.78 -2.2 342,171 - EX28DRAFT_3030 0.79 -0.1 342,215 + EX28DRAFT_3030 0.83 +0.3 342,215 + EX28DRAFT_3030 0.83 -0.3 342,216 - EX28DRAFT_3030 0.84 +0.4 342,216 - EX28DRAFT_3030 0.84 +0.8 342,352 - +0.3
Or see this region's nucleotide sequence