Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2807

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2806 and EX28DRAFT_2807 are separated by 18 nucleotidesEX28DRAFT_2807 and EX28DRAFT_2808 are separated by 86 nucleotidesEX28DRAFT_2808 and EX28DRAFT_2809 overlap by 8 nucleotidesEX28DRAFT_2809 and EX28DRAFT_2810 overlap by 4 nucleotides EX28DRAFT_2806: EX28DRAFT_2806 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 109,842 to 111,293 _2806 EX28DRAFT_2807: EX28DRAFT_2807 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 111,312 to 112,736 _2807 EX28DRAFT_2808: EX28DRAFT_2808 - hydrogenase maturation protease HycI, at 112,823 to 113,278 _2808 EX28DRAFT_2809: EX28DRAFT_2809 - Formate hydrogenlyase maturation protein HycH, at 113,271 to 113,681 _2809 EX28DRAFT_2810: EX28DRAFT_2810 - Ni,Fe-hydrogenase III small subunit, at 113,678 to 114,445 _2810 Position (kb) 111 112 113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 110.491 kb on - strand, within EX28DRAFT_2806at 110.538 kb on + strand, within EX28DRAFT_2806at 110.538 kb on + strand, within EX28DRAFT_2806at 110.703 kb on + strand, within EX28DRAFT_2806at 110.703 kb on + strand, within EX28DRAFT_2806at 111.032 kb on + strand, within EX28DRAFT_2806at 111.291 kb on + strandat 111.413 kb on + strandat 111.414 kb on - strandat 111.531 kb on - strand, within EX28DRAFT_2807at 111.652 kb on - strand, within EX28DRAFT_2807at 111.765 kb on - strand, within EX28DRAFT_2807at 111.765 kb on - strand, within EX28DRAFT_2807at 111.931 kb on - strand, within EX28DRAFT_2807at 111.931 kb on - strand, within EX28DRAFT_2807at 112.039 kb on - strand, within EX28DRAFT_2807at 112.239 kb on + strand, within EX28DRAFT_2807at 112.239 kb on + strand, within EX28DRAFT_2807at 112.239 kb on + strand, within EX28DRAFT_2807at 112.392 kb on + strand, within EX28DRAFT_2807at 112.483 kb on - strand, within EX28DRAFT_2807at 112.495 kb on - strand, within EX28DRAFT_2807at 112.676 kb on + strandat 112.696 kb on - strandat 112.697 kb on + strandat 112.697 kb on + strandat 112.697 kb on + strandat 112.698 kb on - strandat 112.698 kb on - strandat 112.698 kb on - strandat 112.789 kb on + strandat 112.873 kb on - strand, within EX28DRAFT_2808at 112.877 kb on + strand, within EX28DRAFT_2808at 112.877 kb on + strand, within EX28DRAFT_2808at 112.877 kb on + strand, within EX28DRAFT_2808at 112.917 kb on + strand, within EX28DRAFT_2808at 112.918 kb on - strand, within EX28DRAFT_2808at 112.918 kb on - strand, within EX28DRAFT_2808at 112.918 kb on - strand, within EX28DRAFT_2808at 112.918 kb on - strand, within EX28DRAFT_2808at 112.992 kb on + strand, within EX28DRAFT_2808at 112.993 kb on - strand, within EX28DRAFT_2808at 112.993 kb on - strand, within EX28DRAFT_2808at 112.993 kb on - strand, within EX28DRAFT_2808at 113.005 kb on + strand, within EX28DRAFT_2808at 113.024 kb on - strand, within EX28DRAFT_2808at 113.299 kb on + strandat 113.590 kb on + strand, within EX28DRAFT_2809at 113.590 kb on + strand, within EX28DRAFT_2809at 113.593 kb on + strand, within EX28DRAFT_2809at 113.594 kb on - strand, within EX28DRAFT_2809at 113.594 kb on - strand, within EX28DRAFT_2809at 113.640 kb on - strand, within EX28DRAFT_2809at 113.646 kb on - strandat 113.705 kb on - strandat 113.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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110,491 - EX28DRAFT_2806 0.45 -1.2
110,538 + EX28DRAFT_2806 0.48 +0.2
110,538 + EX28DRAFT_2806 0.48 -0.1
110,703 + EX28DRAFT_2806 0.59 -0.5
110,703 + EX28DRAFT_2806 0.59 -2.2
111,032 + EX28DRAFT_2806 0.82 +2.6
111,291 + +0.9
111,413 + +0.6
111,414 - -0.1
111,531 - EX28DRAFT_2807 0.15 -2.0
111,652 - EX28DRAFT_2807 0.24 -0.5
111,765 - EX28DRAFT_2807 0.32 -0.1
111,765 - EX28DRAFT_2807 0.32 +0.2
111,931 - EX28DRAFT_2807 0.43 -0.8
111,931 - EX28DRAFT_2807 0.43 -0.3
112,039 - EX28DRAFT_2807 0.51 -2.3
112,239 + EX28DRAFT_2807 0.65 +0.7
112,239 + EX28DRAFT_2807 0.65 -1.1
112,239 + EX28DRAFT_2807 0.65 -2.9
112,392 + EX28DRAFT_2807 0.76 -0.5
112,483 - EX28DRAFT_2807 0.82 +0.6
112,495 - EX28DRAFT_2807 0.83 -4.6
112,676 + -3.8
112,696 - -0.5
112,697 + -0.1
112,697 + +0.2
112,697 + -1.7
112,698 - -0.0
112,698 - -2.9
112,698 - -2.3
112,789 + -2.0
112,873 - EX28DRAFT_2808 0.11 +1.6
112,877 + EX28DRAFT_2808 0.12 -2.2
112,877 + EX28DRAFT_2808 0.12 -0.6
112,877 + EX28DRAFT_2808 0.12 +0.5
112,917 + EX28DRAFT_2808 0.21 -0.6
112,918 - EX28DRAFT_2808 0.21 -0.0
112,918 - EX28DRAFT_2808 0.21 +0.8
112,918 - EX28DRAFT_2808 0.21 -4.1
112,918 - EX28DRAFT_2808 0.21 -0.5
112,992 + EX28DRAFT_2808 0.37 +0.0
112,993 - EX28DRAFT_2808 0.37 -1.1
112,993 - EX28DRAFT_2808 0.37 -0.5
112,993 - EX28DRAFT_2808 0.37 -1.0
113,005 + EX28DRAFT_2808 0.40 +0.9
113,024 - EX28DRAFT_2808 0.44 -4.6
113,299 + -0.1
113,590 + EX28DRAFT_2809 0.78 +0.2
113,590 + EX28DRAFT_2809 0.78 +0.1
113,593 + EX28DRAFT_2809 0.78 -0.2
113,594 - EX28DRAFT_2809 0.79 +0.4
113,594 - EX28DRAFT_2809 0.79 +0.4
113,640 - EX28DRAFT_2809 0.90 +0.2
113,646 - -0.1
113,705 - -0.9
113,705 - -1.1

Or see this region's nucleotide sequence