Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2747 and EX28DRAFT_2748 overlap by 1 nucleotides EX28DRAFT_2748 and EX28DRAFT_2749 are separated by 106 nucleotides
EX28DRAFT_2747: EX28DRAFT_2747 - Protein of unknown function (DUF1116), at 57,326 to 58,741
_2747
EX28DRAFT_2748: EX28DRAFT_2748 - Succinyl-CoA synthetase, alpha subunit, at 58,741 to 60,282
_2748
EX28DRAFT_2749: EX28DRAFT_2749 - FOG: Ankyrin repeat, at 60,389 to 60,994
_2749
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 57.868 kb on + strand, within EX28DRAFT_2747 at 57.901 kb on - strand, within EX28DRAFT_2747 at 57.988 kb on + strand, within EX28DRAFT_2747 at 58.221 kb on + strand, within EX28DRAFT_2747 at 58.222 kb on - strand, within EX28DRAFT_2747 at 58.246 kb on + strand, within EX28DRAFT_2747 at 58.247 kb on - strand, within EX28DRAFT_2747 at 58.316 kb on - strand, within EX28DRAFT_2747 at 58.497 kb on + strand, within EX28DRAFT_2747 at 58.497 kb on + strand, within EX28DRAFT_2747 at 58.615 kb on + strand at 58.616 kb on - strand at 58.730 kb on + strand at 58.731 kb on - strand at 58.743 kb on - strand at 58.780 kb on + strand at 58.942 kb on - strand, within EX28DRAFT_2748 at 59.125 kb on - strand, within EX28DRAFT_2748 at 59.134 kb on - strand, within EX28DRAFT_2748 at 59.144 kb on - strand, within EX28DRAFT_2748 at 59.144 kb on - strand, within EX28DRAFT_2748 at 59.144 kb on - strand, within EX28DRAFT_2748 at 59.186 kb on + strand, within EX28DRAFT_2748 at 59.264 kb on + strand, within EX28DRAFT_2748 at 59.264 kb on + strand, within EX28DRAFT_2748 at 60.075 kb on + strand, within EX28DRAFT_2748 at 60.079 kb on + strand, within EX28DRAFT_2748 at 60.079 kb on + strand, within EX28DRAFT_2748 at 60.080 kb on - strand, within EX28DRAFT_2748 at 60.080 kb on - strand, within EX28DRAFT_2748 at 60.142 kb on + strand at 60.146 kb on - strand at 60.146 kb on - strand at 60.229 kb on + strand at 60.248 kb on + strand at 60.248 kb on + strand at 60.249 kb on - strand at 60.262 kb on + strand at 60.340 kb on - strand at 60.419 kb on + strand at 60.420 kb on - strand at 60.468 kb on + strand, within EX28DRAFT_2749 at 60.840 kb on + strand, within EX28DRAFT_2749 at 60.841 kb on - strand, within EX28DRAFT_2749 at 60.841 kb on - strand, within EX28DRAFT_2749 at 60.862 kb on + strand, within EX28DRAFT_2749 at 60.862 kb on + strand, within EX28DRAFT_2749 at 60.865 kb on + strand, within EX28DRAFT_2749 at 60.902 kb on - strand, within EX28DRAFT_2749 at 60.995 kb on - strand at 61.047 kb on - strand at 61.053 kb on - strand at 61.191 kb on + strand at 61.192 kb on - strand at 61.281 kb on + strand at 61.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 57,868 + EX28DRAFT_2747 0.38 +3.0 57,901 - EX28DRAFT_2747 0.41 +0.6 57,988 + EX28DRAFT_2747 0.47 -0.1 58,221 + EX28DRAFT_2747 0.63 -1.2 58,222 - EX28DRAFT_2747 0.63 -1.4 58,246 + EX28DRAFT_2747 0.65 -0.7 58,247 - EX28DRAFT_2747 0.65 -0.4 58,316 - EX28DRAFT_2747 0.70 +0.3 58,497 + EX28DRAFT_2747 0.83 -3.4 58,497 + EX28DRAFT_2747 0.83 -0.0 58,615 + -2.9 58,616 - +0.3 58,730 + -1.2 58,731 - -0.1 58,743 - +0.9 58,780 + +0.1 58,942 - EX28DRAFT_2748 0.13 -0.0 59,125 - EX28DRAFT_2748 0.25 +1.6 59,134 - EX28DRAFT_2748 0.25 -1.4 59,144 - EX28DRAFT_2748 0.26 -1.2 59,144 - EX28DRAFT_2748 0.26 +1.7 59,144 - EX28DRAFT_2748 0.26 +0.8 59,186 + EX28DRAFT_2748 0.29 +1.6 59,264 + EX28DRAFT_2748 0.34 +0.4 59,264 + EX28DRAFT_2748 0.34 +0.3 60,075 + EX28DRAFT_2748 0.87 +0.8 60,079 + EX28DRAFT_2748 0.87 -1.0 60,079 + EX28DRAFT_2748 0.87 -2.5 60,080 - EX28DRAFT_2748 0.87 +1.6 60,080 - EX28DRAFT_2748 0.87 -0.6 60,142 + -2.6 60,146 - -0.2 60,146 - +0.7 60,229 + +0.4 60,248 + +0.2 60,248 + +1.6 60,249 - -1.0 60,262 + +0.2 60,340 - -2.3 60,419 + -0.5 60,420 - -1.0 60,468 + EX28DRAFT_2749 0.13 +0.1 60,840 + EX28DRAFT_2749 0.74 -1.4 60,841 - EX28DRAFT_2749 0.75 +0.2 60,841 - EX28DRAFT_2749 0.75 +1.6 60,862 + EX28DRAFT_2749 0.78 -2.1 60,862 + EX28DRAFT_2749 0.78 +0.1 60,865 + EX28DRAFT_2749 0.79 +0.5 60,902 - EX28DRAFT_2749 0.85 +2.0 60,995 - -1.8 61,047 - +1.8 61,053 - +0.3 61,191 + -2.5 61,192 - -0.2 61,281 + +0.4 61,282 - +0.2
Or see this region's nucleotide sequence