Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1979 and EX28DRAFT_1980 are separated by 80 nucleotides EX28DRAFT_1980 and EX28DRAFT_1981 are separated by 57 nucleotides EX28DRAFT_1981 and EX28DRAFT_1982 are separated by 123 nucleotides EX28DRAFT_1982 and EX28DRAFT_1983 are separated by 19 nucleotides
EX28DRAFT_1979: EX28DRAFT_1979 - Uncharacterized protein conserved in bacteria, at 1,979,889 to 1,980,551
_1979
EX28DRAFT_1980: EX28DRAFT_1980 - methylglyoxal synthase, at 1,980,632 to 1,981,090
_1980
EX28DRAFT_1981: EX28DRAFT_1981 - Superfamily I DNA and RNA helicases, at 1,981,148 to 1,983,202
_1981
EX28DRAFT_1982: EX28DRAFT_1982 - Predicted membrane protein, at 1,983,326 to 1,983,772
_1982
EX28DRAFT_1983: EX28DRAFT_1983 - TIGR01666 family membrane protein, at 1,983,792 to 1,985,954
_1983
Position (kb) 1981
1982
1983
1984 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1980.282 kb on - strand, within EX28DRAFT_1979 at 1980.339 kb on + strand, within EX28DRAFT_1979 at 1980.339 kb on + strand, within EX28DRAFT_1979 at 1980.340 kb on - strand, within EX28DRAFT_1979 at 1980.549 kb on + strand at 1980.626 kb on - strand at 1980.626 kb on - strand at 1980.631 kb on + strand at 1980.697 kb on + strand, within EX28DRAFT_1980 at 1980.698 kb on - strand, within EX28DRAFT_1980 at 1980.713 kb on - strand, within EX28DRAFT_1980 at 1980.713 kb on - strand, within EX28DRAFT_1980 at 1980.713 kb on - strand, within EX28DRAFT_1980 at 1980.713 kb on - strand, within EX28DRAFT_1980 at 1980.970 kb on + strand, within EX28DRAFT_1980 at 1981.048 kb on + strand at 1981.049 kb on - strand at 1981.059 kb on - strand at 1981.127 kb on + strand at 1981.150 kb on - strand at 1981.177 kb on + strand at 1981.263 kb on + strand at 1981.392 kb on + strand, within EX28DRAFT_1981 at 1981.393 kb on - strand, within EX28DRAFT_1981 at 1981.430 kb on - strand, within EX28DRAFT_1981 at 1981.486 kb on + strand, within EX28DRAFT_1981 at 1981.487 kb on - strand, within EX28DRAFT_1981 at 1981.487 kb on - strand, within EX28DRAFT_1981 at 1981.516 kb on + strand, within EX28DRAFT_1981 at 1981.517 kb on - strand, within EX28DRAFT_1981 at 1981.600 kb on + strand, within EX28DRAFT_1981 at 1981.786 kb on - strand, within EX28DRAFT_1981 at 1981.826 kb on - strand, within EX28DRAFT_1981 at 1981.903 kb on + strand, within EX28DRAFT_1981 at 1981.903 kb on + strand, within EX28DRAFT_1981 at 1981.903 kb on + strand, within EX28DRAFT_1981 at 1981.948 kb on + strand, within EX28DRAFT_1981 at 1981.948 kb on + strand, within EX28DRAFT_1981 at 1981.949 kb on - strand, within EX28DRAFT_1981 at 1981.949 kb on - strand, within EX28DRAFT_1981 at 1981.949 kb on - strand, within EX28DRAFT_1981 at 1982.359 kb on + strand, within EX28DRAFT_1981 at 1982.359 kb on + strand, within EX28DRAFT_1981 at 1982.360 kb on - strand, within EX28DRAFT_1981 at 1982.405 kb on - strand, within EX28DRAFT_1981 at 1982.632 kb on + strand, within EX28DRAFT_1981 at 1982.632 kb on + strand, within EX28DRAFT_1981 at 1982.701 kb on + strand, within EX28DRAFT_1981 at 1983.011 kb on - strand at 1983.091 kb on + strand at 1983.091 kb on + strand at 1983.091 kb on + strand at 1983.096 kb on + strand at 1983.097 kb on - strand at 1983.227 kb on - strand at 1983.227 kb on - strand at 1983.231 kb on + strand at 1983.256 kb on + strand at 1983.641 kb on - strand, within EX28DRAFT_1982 at 1983.775 kb on - strand at 1983.792 kb on - strand at 1983.818 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.853 kb on + strand at 1983.857 kb on + strand at 1984.076 kb on + strand, within EX28DRAFT_1983 at 1984.098 kb on - strand, within EX28DRAFT_1983 at 1984.098 kb on - strand, within EX28DRAFT_1983 at 1984.164 kb on + strand, within EX28DRAFT_1983 at 1984.164 kb on + strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 1,980,282 - EX28DRAFT_1979 0.59 +0.7 1,980,339 + EX28DRAFT_1979 0.68 -2.1 1,980,339 + EX28DRAFT_1979 0.68 +0.2 1,980,340 - EX28DRAFT_1979 0.68 +2.0 1,980,549 + +0.9 1,980,626 - +1.4 1,980,626 - -0.5 1,980,631 + -2.0 1,980,697 + EX28DRAFT_1980 0.14 -0.6 1,980,698 - EX28DRAFT_1980 0.14 -0.2 1,980,713 - EX28DRAFT_1980 0.18 +0.3 1,980,713 - EX28DRAFT_1980 0.18 +0.6 1,980,713 - EX28DRAFT_1980 0.18 -0.2 1,980,713 - EX28DRAFT_1980 0.18 -0.1 1,980,970 + EX28DRAFT_1980 0.74 +2.3 1,981,048 + +4.6 1,981,049 - +0.7 1,981,059 - -0.2 1,981,127 + -0.8 1,981,150 - -0.1 1,981,177 + -0.2 1,981,263 + -0.7 1,981,392 + EX28DRAFT_1981 0.12 +0.9 1,981,393 - EX28DRAFT_1981 0.12 +0.6 1,981,430 - EX28DRAFT_1981 0.14 -0.0 1,981,486 + EX28DRAFT_1981 0.16 -0.1 1,981,487 - EX28DRAFT_1981 0.16 -0.7 1,981,487 - EX28DRAFT_1981 0.16 +0.3 1,981,516 + EX28DRAFT_1981 0.18 -3.6 1,981,517 - EX28DRAFT_1981 0.18 +1.2 1,981,600 + EX28DRAFT_1981 0.22 +1.4 1,981,786 - EX28DRAFT_1981 0.31 -0.3 1,981,826 - EX28DRAFT_1981 0.33 -0.4 1,981,903 + EX28DRAFT_1981 0.37 -1.0 1,981,903 + EX28DRAFT_1981 0.37 -0.2 1,981,903 + EX28DRAFT_1981 0.37 -1.2 1,981,948 + EX28DRAFT_1981 0.39 -0.6 1,981,948 + EX28DRAFT_1981 0.39 -1.9 1,981,949 - EX28DRAFT_1981 0.39 -0.6 1,981,949 - EX28DRAFT_1981 0.39 +0.8 1,981,949 - EX28DRAFT_1981 0.39 -0.2 1,982,359 + EX28DRAFT_1981 0.59 -1.4 1,982,359 + EX28DRAFT_1981 0.59 -1.9 1,982,360 - EX28DRAFT_1981 0.59 -0.6 1,982,405 - EX28DRAFT_1981 0.61 +0.4 1,982,632 + EX28DRAFT_1981 0.72 -1.0 1,982,632 + EX28DRAFT_1981 0.72 -0.6 1,982,701 + EX28DRAFT_1981 0.76 +0.0 1,983,011 - +0.3 1,983,091 + +0.4 1,983,091 + -1.3 1,983,091 + -3.9 1,983,096 + -0.2 1,983,097 - +0.3 1,983,227 - -0.1 1,983,227 - +0.0 1,983,231 + -0.5 1,983,256 + +0.1 1,983,641 - EX28DRAFT_1982 0.70 +0.4 1,983,775 - -2.8 1,983,792 - -0.5 1,983,818 + +0.8 1,983,840 + +1.2 1,983,840 + -0.1 1,983,840 + +0.3 1,983,840 + +0.7 1,983,840 + -1.5 1,983,841 - -0.2 1,983,841 - -0.1 1,983,853 + -0.1 1,983,857 + -1.1 1,984,076 + EX28DRAFT_1983 0.13 -2.0 1,984,098 - EX28DRAFT_1983 0.14 -0.7 1,984,098 - EX28DRAFT_1983 0.14 +0.5 1,984,164 + EX28DRAFT_1983 0.17 +0.8 1,984,164 + EX28DRAFT_1983 0.17 -2.3 1,984,165 - EX28DRAFT_1983 0.17 -1.4 1,984,165 - EX28DRAFT_1983 0.17 -0.1 1,984,165 - EX28DRAFT_1983 0.17 -0.0
Or see this region's nucleotide sequence