Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1534

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1532 and EX28DRAFT_1533 are separated by 27 nucleotidesEX28DRAFT_1533 and EX28DRAFT_1534 are separated by 214 nucleotidesEX28DRAFT_1534 and EX28DRAFT_1535 overlap by 20 nucleotides EX28DRAFT_1532: EX28DRAFT_1532 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 1,546,644 to 1,548,305 _1532 EX28DRAFT_1533: EX28DRAFT_1533 - Uncharacterized protein conserved in bacteria, at 1,548,333 to 1,548,896 _1533 EX28DRAFT_1534: EX28DRAFT_1534 - RNA, at 1,549,111 to 1,549,270 _1534 EX28DRAFT_1535: EX28DRAFT_1535 - Transcriptional regulator, at 1,549,251 to 1,550,162 _1535 Position (kb) 1549 1550Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1548.403 kb on + strand, within EX28DRAFT_1533at 1548.404 kb on - strand, within EX28DRAFT_1533at 1548.404 kb on - strand, within EX28DRAFT_1533at 1548.404 kb on - strand, within EX28DRAFT_1533at 1548.582 kb on - strand, within EX28DRAFT_1533at 1548.589 kb on + strand, within EX28DRAFT_1533at 1548.652 kb on + strand, within EX28DRAFT_1533at 1548.652 kb on + strand, within EX28DRAFT_1533at 1548.800 kb on + strand, within EX28DRAFT_1533at 1548.801 kb on - strand, within EX28DRAFT_1533at 1548.926 kb on + strandat 1548.927 kb on - strandat 1548.927 kb on - strandat 1548.929 kb on + strandat 1548.930 kb on - strandat 1548.932 kb on - strandat 1548.932 kb on - strandat 1549.001 kb on + strandat 1549.003 kb on + strandat 1549.004 kb on - strandat 1549.004 kb on - strandat 1549.004 kb on - strandat 1549.004 kb on - strandat 1549.006 kb on - strandat 1549.011 kb on - strandat 1549.014 kb on + strandat 1549.089 kb on + strandat 1549.134 kb on + strand, within EX28DRAFT_1534at 1549.139 kb on - strand, within EX28DRAFT_1534at 1549.142 kb on + strand, within EX28DRAFT_1534at 1549.143 kb on - strand, within EX28DRAFT_1534at 1549.202 kb on + strand, within EX28DRAFT_1534at 1549.202 kb on + strand, within EX28DRAFT_1534at 1549.292 kb on + strandat 1549.341 kb on + strandat 1549.346 kb on - strand, within EX28DRAFT_1535at 1549.348 kb on + strand, within EX28DRAFT_1535at 1549.348 kb on + strand, within EX28DRAFT_1535at 1549.434 kb on + strand, within EX28DRAFT_1535at 1549.469 kb on + strand, within EX28DRAFT_1535at 1549.549 kb on + strand, within EX28DRAFT_1535at 1549.552 kb on + strand, within EX28DRAFT_1535at 1549.553 kb on - strand, within EX28DRAFT_1535at 1549.585 kb on + strand, within EX28DRAFT_1535at 1549.602 kb on - strand, within EX28DRAFT_1535at 1549.708 kb on + strand, within EX28DRAFT_1535at 1549.708 kb on + strand, within EX28DRAFT_1535at 1549.709 kb on - strand, within EX28DRAFT_1535at 1549.743 kb on + strand, within EX28DRAFT_1535at 1549.958 kb on - strand, within EX28DRAFT_1535at 1550.163 kb on - strandat 1550.209 kb on + strandat 1550.210 kb on - strandat 1550.210 kb on - strandat 1550.215 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
remove
1,548,403 + EX28DRAFT_1533 0.12 -0.5
1,548,404 - EX28DRAFT_1533 0.13 +1.2
1,548,404 - EX28DRAFT_1533 0.13 -1.7
1,548,404 - EX28DRAFT_1533 0.13 +1.1
1,548,582 - EX28DRAFT_1533 0.44 -0.1
1,548,589 + EX28DRAFT_1533 0.45 -0.7
1,548,652 + EX28DRAFT_1533 0.57 -1.3
1,548,652 + EX28DRAFT_1533 0.57 -0.2
1,548,800 + EX28DRAFT_1533 0.83 +0.2
1,548,801 - EX28DRAFT_1533 0.83 -1.6
1,548,926 + +1.9
1,548,927 - +0.8
1,548,927 - -0.2
1,548,929 + -1.9
1,548,930 - +0.4
1,548,932 - +0.2
1,548,932 - -0.9
1,549,001 + +1.0
1,549,003 + -0.5
1,549,004 - -2.8
1,549,004 - -0.9
1,549,004 - +1.2
1,549,004 - +2.6
1,549,006 - +0.9
1,549,011 - +0.9
1,549,014 + +0.6
1,549,089 + +0.8
1,549,134 + EX28DRAFT_1534 0.14 -1.9
1,549,139 - EX28DRAFT_1534 0.17 -4.2
1,549,142 + EX28DRAFT_1534 0.19 -0.7
1,549,143 - EX28DRAFT_1534 0.20 -0.1
1,549,202 + EX28DRAFT_1534 0.57 -1.3
1,549,202 + EX28DRAFT_1534 0.57 -0.6
1,549,292 + +1.1
1,549,341 + +1.1
1,549,346 - EX28DRAFT_1535 0.10 -0.5
1,549,348 + EX28DRAFT_1535 0.11 +0.0
1,549,348 + EX28DRAFT_1535 0.11 -2.1
1,549,434 + EX28DRAFT_1535 0.20 -1.7
1,549,469 + EX28DRAFT_1535 0.24 -0.9
1,549,549 + EX28DRAFT_1535 0.33 -0.2
1,549,552 + EX28DRAFT_1535 0.33 -3.3
1,549,553 - EX28DRAFT_1535 0.33 +1.6
1,549,585 + EX28DRAFT_1535 0.37 -3.2
1,549,602 - EX28DRAFT_1535 0.38 +0.5
1,549,708 + EX28DRAFT_1535 0.50 +1.3
1,549,708 + EX28DRAFT_1535 0.50 +1.3
1,549,709 - EX28DRAFT_1535 0.50 +0.1
1,549,743 + EX28DRAFT_1535 0.54 +0.5
1,549,958 - EX28DRAFT_1535 0.78 +3.1
1,550,163 - -1.4
1,550,209 + -0.6
1,550,210 - +1.1
1,550,210 - -1.1
1,550,215 - -0.3

Or see this region's nucleotide sequence