Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1198

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1197 and EX28DRAFT_1198 are separated by 110 nucleotidesEX28DRAFT_1198 and EX28DRAFT_1199 are separated by 98 nucleotidesEX28DRAFT_1199 and EX28DRAFT_1200 overlap by 47 nucleotides EX28DRAFT_1197: EX28DRAFT_1197 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 1,216,551 to 1,218,152 _1197 EX28DRAFT_1198: EX28DRAFT_1198 - NAD-dependent aldehyde dehydrogenases, at 1,218,263 to 1,219,651 _1198 EX28DRAFT_1199: EX28DRAFT_1199 - Transcriptional regulator, at 1,219,750 to 1,220,628 _1199 EX28DRAFT_1200: EX28DRAFT_1200 - Acetyltransferases, at 1,220,582 to 1,221,064 _1200 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1217.345 kb on + strand, within EX28DRAFT_1197at 1217.346 kb on - strand, within EX28DRAFT_1197at 1217.346 kb on - strand, within EX28DRAFT_1197at 1217.364 kb on + strand, within EX28DRAFT_1197at 1217.364 kb on + strand, within EX28DRAFT_1197at 1217.365 kb on - strand, within EX28DRAFT_1197at 1217.365 kb on - strand, within EX28DRAFT_1197at 1217.432 kb on + strand, within EX28DRAFT_1197at 1217.432 kb on + strand, within EX28DRAFT_1197at 1217.562 kb on + strand, within EX28DRAFT_1197at 1217.617 kb on + strand, within EX28DRAFT_1197at 1217.617 kb on + strand, within EX28DRAFT_1197at 1217.617 kb on + strand, within EX28DRAFT_1197at 1217.617 kb on + strand, within EX28DRAFT_1197at 1217.678 kb on + strand, within EX28DRAFT_1197at 1217.679 kb on - strand, within EX28DRAFT_1197at 1217.679 kb on - strand, within EX28DRAFT_1197at 1217.692 kb on - strand, within EX28DRAFT_1197at 1217.692 kb on - strand, within EX28DRAFT_1197at 1217.692 kb on - strand, within EX28DRAFT_1197at 1217.735 kb on - strand, within EX28DRAFT_1197at 1218.057 kb on - strandat 1218.212 kb on - strandat 1218.264 kb on + strandat 1218.265 kb on - strandat 1218.265 kb on - strandat 1218.616 kb on - strand, within EX28DRAFT_1198at 1218.616 kb on - strand, within EX28DRAFT_1198at 1218.616 kb on - strand, within EX28DRAFT_1198at 1218.620 kb on - strand, within EX28DRAFT_1198at 1218.735 kb on + strand, within EX28DRAFT_1198at 1218.735 kb on + strand, within EX28DRAFT_1198at 1218.736 kb on - strand, within EX28DRAFT_1198at 1218.736 kb on - strand, within EX28DRAFT_1198at 1218.736 kb on - strand, within EX28DRAFT_1198at 1218.736 kb on - strand, within EX28DRAFT_1198at 1218.830 kb on - strand, within EX28DRAFT_1198at 1218.920 kb on - strand, within EX28DRAFT_1198at 1218.920 kb on - strand, within EX28DRAFT_1198at 1218.920 kb on - strand, within EX28DRAFT_1198at 1219.065 kb on - strand, within EX28DRAFT_1198at 1219.139 kb on - strand, within EX28DRAFT_1198at 1219.183 kb on - strand, within EX28DRAFT_1198at 1219.189 kb on + strand, within EX28DRAFT_1198at 1219.282 kb on - strand, within EX28DRAFT_1198at 1219.645 kb on - strandat 1219.645 kb on - strandat 1219.757 kb on + strandat 1220.019 kb on - strand, within EX28DRAFT_1199at 1220.019 kb on - strand, within EX28DRAFT_1199at 1220.151 kb on - strand, within EX28DRAFT_1199at 1220.305 kb on + strand, within EX28DRAFT_1199at 1220.305 kb on + strand, within EX28DRAFT_1199at 1220.402 kb on - strand, within EX28DRAFT_1199at 1220.583 kb on + strandat 1220.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,217,345 + EX28DRAFT_1197 0.50 +1.0
1,217,346 - EX28DRAFT_1197 0.50 +1.1
1,217,346 - EX28DRAFT_1197 0.50 -0.2
1,217,364 + EX28DRAFT_1197 0.51 -0.6
1,217,364 + EX28DRAFT_1197 0.51 +1.1
1,217,365 - EX28DRAFT_1197 0.51 -0.0
1,217,365 - EX28DRAFT_1197 0.51 +0.1
1,217,432 + EX28DRAFT_1197 0.55 -2.7
1,217,432 + EX28DRAFT_1197 0.55 +0.6
1,217,562 + EX28DRAFT_1197 0.63 -2.3
1,217,617 + EX28DRAFT_1197 0.67 +0.9
1,217,617 + EX28DRAFT_1197 0.67 -1.0
1,217,617 + EX28DRAFT_1197 0.67 -3.3
1,217,617 + EX28DRAFT_1197 0.67 -2.7
1,217,678 + EX28DRAFT_1197 0.70 +1.1
1,217,679 - EX28DRAFT_1197 0.70 +1.0
1,217,679 - EX28DRAFT_1197 0.70 -0.7
1,217,692 - EX28DRAFT_1197 0.71 -0.0
1,217,692 - EX28DRAFT_1197 0.71 -2.7
1,217,692 - EX28DRAFT_1197 0.71 +0.1
1,217,735 - EX28DRAFT_1197 0.74 +0.5
1,218,057 - -0.3
1,218,212 - -0.8
1,218,264 + -2.4
1,218,265 - +0.5
1,218,265 - +1.6
1,218,616 - EX28DRAFT_1198 0.25 -3.5
1,218,616 - EX28DRAFT_1198 0.25 -0.1
1,218,616 - EX28DRAFT_1198 0.25 +0.5
1,218,620 - EX28DRAFT_1198 0.26 -0.6
1,218,735 + EX28DRAFT_1198 0.34 -0.8
1,218,735 + EX28DRAFT_1198 0.34 -3.7
1,218,736 - EX28DRAFT_1198 0.34 +0.4
1,218,736 - EX28DRAFT_1198 0.34 -0.3
1,218,736 - EX28DRAFT_1198 0.34 -0.0
1,218,736 - EX28DRAFT_1198 0.34 +2.9
1,218,830 - EX28DRAFT_1198 0.41 +1.0
1,218,920 - EX28DRAFT_1198 0.47 +0.4
1,218,920 - EX28DRAFT_1198 0.47 +0.6
1,218,920 - EX28DRAFT_1198 0.47 -3.5
1,219,065 - EX28DRAFT_1198 0.58 +4.3
1,219,139 - EX28DRAFT_1198 0.63 +0.0
1,219,183 - EX28DRAFT_1198 0.66 -4.4
1,219,189 + EX28DRAFT_1198 0.67 +0.0
1,219,282 - EX28DRAFT_1198 0.73 +3.0
1,219,645 - -0.3
1,219,645 - -1.2
1,219,757 + +2.1
1,220,019 - EX28DRAFT_1199 0.31 +0.5
1,220,019 - EX28DRAFT_1199 0.31 -3.8
1,220,151 - EX28DRAFT_1199 0.46 -0.7
1,220,305 + EX28DRAFT_1199 0.63 +0.2
1,220,305 + EX28DRAFT_1199 0.63 -0.2
1,220,402 - EX28DRAFT_1199 0.74 -0.4
1,220,583 + -0.2
1,220,584 - -0.5

Or see this region's nucleotide sequence