Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0992 and EX28DRAFT_0993 overlap by 4 nucleotides EX28DRAFT_0993 and EX28DRAFT_0994 are separated by 112 nucleotides
EX28DRAFT_0992: EX28DRAFT_0992 - Predicted ATPase, at 994,245 to 995,642
_0992
EX28DRAFT_0993: EX28DRAFT_0993 - TIGR01620 family protein, at 995,639 to 996,691
_0993
EX28DRAFT_0994: EX28DRAFT_0994 - Transcriptional regulator of aromatic amino acids metabolism, at 996,804 to 998,345
_0994
Position (kb) 995
996
997 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 995.029 kb on - strand, within EX28DRAFT_0992 at 995.031 kb on + strand, within EX28DRAFT_0992 at 995.031 kb on + strand, within EX28DRAFT_0992 at 995.059 kb on - strand, within EX28DRAFT_0992 at 995.630 kb on + strand at 995.631 kb on - strand at 995.743 kb on + strand at 996.381 kb on + strand, within EX28DRAFT_0993 at 996.381 kb on + strand, within EX28DRAFT_0993 at 996.395 kb on + strand, within EX28DRAFT_0993 at 996.396 kb on - strand, within EX28DRAFT_0993 at 996.434 kb on - strand, within EX28DRAFT_0993 at 996.546 kb on + strand, within EX28DRAFT_0993 at 996.705 kb on + strand at 996.706 kb on - strand at 996.764 kb on + strand at 996.764 kb on + strand at 996.765 kb on - strand at 996.765 kb on - strand at 996.871 kb on + strand at 996.875 kb on + strand at 996.876 kb on - strand at 996.886 kb on + strand at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.004 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.251 kb on - strand, within EX28DRAFT_0994 at 997.297 kb on - strand, within EX28DRAFT_0994 at 997.575 kb on + strand, within EX28DRAFT_0994 at 997.598 kb on + strand, within EX28DRAFT_0994 at 997.599 kb on - strand, within EX28DRAFT_0994
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 995,029 - EX28DRAFT_0992 0.56 -0.0 995,031 + EX28DRAFT_0992 0.56 -1.7 995,031 + EX28DRAFT_0992 0.56 -1.1 995,059 - EX28DRAFT_0992 0.58 -2.3 995,630 + +0.9 995,631 - -0.5 995,743 + +0.4 996,381 + EX28DRAFT_0993 0.70 +1.5 996,381 + EX28DRAFT_0993 0.70 -1.4 996,395 + EX28DRAFT_0993 0.72 -0.3 996,396 - EX28DRAFT_0993 0.72 +0.2 996,434 - EX28DRAFT_0993 0.75 -0.6 996,546 + EX28DRAFT_0993 0.86 +0.4 996,705 + +0.3 996,706 - +1.0 996,764 + -3.9 996,764 + +1.7 996,765 - -1.1 996,765 - +1.4 996,871 + +0.5 996,875 + +1.3 996,876 - -2.5 996,886 + -0.0 997,004 - EX28DRAFT_0994 0.13 -0.7 997,004 - EX28DRAFT_0994 0.13 -3.5 997,004 - EX28DRAFT_0994 0.13 -0.5 997,251 - EX28DRAFT_0994 0.29 -1.3 997,251 - EX28DRAFT_0994 0.29 +0.3 997,251 - EX28DRAFT_0994 0.29 -3.0 997,297 - EX28DRAFT_0994 0.32 -0.8 997,575 + EX28DRAFT_0994 0.50 -4.0 997,598 + EX28DRAFT_0994 0.51 -0.3 997,599 - EX28DRAFT_0994 0.52 +3.3
Or see this region's nucleotide sequence