Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0981 and EX28DRAFT_0982 are separated by 22 nucleotides EX28DRAFT_0982 and EX28DRAFT_0983 overlap by 14 nucleotides EX28DRAFT_0983 and EX28DRAFT_0984 are separated by 28 nucleotides
EX28DRAFT_0981: EX28DRAFT_0981 - ABC-type sugar transport system, periplasmic component, at 982,057 to 983,349
_0981
EX28DRAFT_0982: EX28DRAFT_0982 - ABC-type sugar transport systems, permease components, at 983,372 to 984,253
_0982
EX28DRAFT_0983: EX28DRAFT_0983 - ABC-type sugar transport system, permease component, at 984,240 to 985,082
_0983
EX28DRAFT_0984: EX28DRAFT_0984 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 985,111 to 986,163
_0984
Position (kb) 984
985
986 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 983.496 kb on + strand, within EX28DRAFT_0982 at 983.545 kb on + strand, within EX28DRAFT_0982 at 983.549 kb on + strand, within EX28DRAFT_0982 at 983.549 kb on + strand, within EX28DRAFT_0982 at 983.549 kb on + strand, within EX28DRAFT_0982 at 983.550 kb on - strand, within EX28DRAFT_0982 at 983.550 kb on - strand, within EX28DRAFT_0982 at 983.717 kb on + strand, within EX28DRAFT_0982 at 983.717 kb on + strand, within EX28DRAFT_0982 at 983.756 kb on + strand, within EX28DRAFT_0982 at 983.756 kb on + strand, within EX28DRAFT_0982 at 983.756 kb on + strand, within EX28DRAFT_0982 at 983.756 kb on + strand, within EX28DRAFT_0982 at 983.757 kb on - strand, within EX28DRAFT_0982 at 983.790 kb on - strand, within EX28DRAFT_0982 at 983.941 kb on + strand, within EX28DRAFT_0982 at 984.068 kb on + strand, within EX28DRAFT_0982 at 984.109 kb on + strand, within EX28DRAFT_0982 at 984.109 kb on + strand, within EX28DRAFT_0982 at 984.259 kb on + strand at 984.414 kb on + strand, within EX28DRAFT_0983 at 984.414 kb on + strand, within EX28DRAFT_0983 at 984.592 kb on - strand, within EX28DRAFT_0983 at 984.592 kb on - strand, within EX28DRAFT_0983 at 984.655 kb on - strand, within EX28DRAFT_0983 at 984.655 kb on - strand, within EX28DRAFT_0983 at 984.673 kb on + strand, within EX28DRAFT_0983 at 984.673 kb on + strand, within EX28DRAFT_0983 at 984.674 kb on - strand, within EX28DRAFT_0983 at 984.729 kb on + strand, within EX28DRAFT_0983 at 984.963 kb on + strand, within EX28DRAFT_0983 at 984.965 kb on + strand, within EX28DRAFT_0983 at 985.023 kb on + strand at 985.024 kb on - strand at 985.359 kb on + strand, within EX28DRAFT_0984 at 985.405 kb on + strand, within EX28DRAFT_0984 at 985.406 kb on - strand, within EX28DRAFT_0984 at 985.477 kb on + strand, within EX28DRAFT_0984 at 985.477 kb on + strand, within EX28DRAFT_0984 at 985.478 kb on - strand, within EX28DRAFT_0984 at 985.488 kb on + strand, within EX28DRAFT_0984 at 985.488 kb on + strand, within EX28DRAFT_0984 at 985.489 kb on - strand, within EX28DRAFT_0984 at 985.528 kb on + strand, within EX28DRAFT_0984 at 985.874 kb on - strand, within EX28DRAFT_0984 at 985.874 kb on - strand, within EX28DRAFT_0984 at 985.877 kb on + strand, within EX28DRAFT_0984 at 985.878 kb on - strand, within EX28DRAFT_0984 at 986.045 kb on - strand, within EX28DRAFT_0984
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 983,496 + EX28DRAFT_0982 0.14 -3.0 983,545 + EX28DRAFT_0982 0.20 -0.7 983,549 + EX28DRAFT_0982 0.20 -0.2 983,549 + EX28DRAFT_0982 0.20 +1.7 983,549 + EX28DRAFT_0982 0.20 +0.4 983,550 - EX28DRAFT_0982 0.20 +1.0 983,550 - EX28DRAFT_0982 0.20 -1.9 983,717 + EX28DRAFT_0982 0.39 +0.9 983,717 + EX28DRAFT_0982 0.39 -0.4 983,756 + EX28DRAFT_0982 0.44 +0.1 983,756 + EX28DRAFT_0982 0.44 -1.2 983,756 + EX28DRAFT_0982 0.44 -0.3 983,756 + EX28DRAFT_0982 0.44 -1.5 983,757 - EX28DRAFT_0982 0.44 -0.0 983,790 - EX28DRAFT_0982 0.47 +1.4 983,941 + EX28DRAFT_0982 0.65 -1.9 984,068 + EX28DRAFT_0982 0.79 +0.2 984,109 + EX28DRAFT_0982 0.84 -0.3 984,109 + EX28DRAFT_0982 0.84 +0.1 984,259 + +1.2 984,414 + EX28DRAFT_0983 0.21 +0.7 984,414 + EX28DRAFT_0983 0.21 +1.4 984,592 - EX28DRAFT_0983 0.42 -0.7 984,592 - EX28DRAFT_0983 0.42 +0.2 984,655 - EX28DRAFT_0983 0.49 -0.3 984,655 - EX28DRAFT_0983 0.49 +0.7 984,673 + EX28DRAFT_0983 0.51 -1.4 984,673 + EX28DRAFT_0983 0.51 -0.2 984,674 - EX28DRAFT_0983 0.51 -0.6 984,729 + EX28DRAFT_0983 0.58 -0.0 984,963 + EX28DRAFT_0983 0.86 -2.0 984,965 + EX28DRAFT_0983 0.86 -4.5 985,023 + -0.2 985,024 - +0.9 985,359 + EX28DRAFT_0984 0.24 +0.3 985,405 + EX28DRAFT_0984 0.28 +2.4 985,406 - EX28DRAFT_0984 0.28 +0.8 985,477 + EX28DRAFT_0984 0.35 +1.6 985,477 + EX28DRAFT_0984 0.35 +0.5 985,478 - EX28DRAFT_0984 0.35 -0.4 985,488 + EX28DRAFT_0984 0.36 -1.9 985,488 + EX28DRAFT_0984 0.36 -0.4 985,489 - EX28DRAFT_0984 0.36 -0.1 985,528 + EX28DRAFT_0984 0.40 +0.3 985,874 - EX28DRAFT_0984 0.72 -0.1 985,874 - EX28DRAFT_0984 0.72 +0.2 985,877 + EX28DRAFT_0984 0.73 +0.3 985,878 - EX28DRAFT_0984 0.73 -2.6 986,045 - EX28DRAFT_0984 0.89 +0.4
Or see this region's nucleotide sequence