Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0972 and EX28DRAFT_0973 overlap by 14 nucleotides EX28DRAFT_0973 and EX28DRAFT_0974 overlap by 4 nucleotides EX28DRAFT_0974 and EX28DRAFT_0975 are separated by 88 nucleotides
EX28DRAFT_0972: EX28DRAFT_0972 - ABC-type antimicrobial peptide transport system, permease component, at 973,897 to 974,787
_0972
EX28DRAFT_0973: EX28DRAFT_0973 - ABC-type antimicrobial peptide transport system, permease component, at 974,774 to 975,739
_0973
EX28DRAFT_0974: EX28DRAFT_0974 - ABC-type oligopeptide transport system, periplasmic component, at 975,736 to 977,376
_0974
EX28DRAFT_0975: EX28DRAFT_0975 - psp operon transcriptional activator PspF, at 977,465 to 978,442
_0975
Position (kb) 975
976
977
978 Strain fitness (log2 ratio) -2
-1
0
1
2 at 974.771 kb on - strand at 974.781 kb on - strand at 974.798 kb on - strand at 974.845 kb on + strand at 975.993 kb on - strand, within EX28DRAFT_0974 at 976.485 kb on - strand, within EX28DRAFT_0974 at 976.492 kb on - strand, within EX28DRAFT_0974 at 976.637 kb on - strand, within EX28DRAFT_0974 at 976.966 kb on - strand, within EX28DRAFT_0974 at 977.508 kb on + strand at 977.546 kb on - strand at 977.548 kb on - strand at 977.548 kb on - strand at 977.548 kb on - strand at 977.609 kb on + strand, within EX28DRAFT_0975 at 978.066 kb on + strand, within EX28DRAFT_0975 at 978.262 kb on + strand, within EX28DRAFT_0975 at 978.263 kb on - strand, within EX28DRAFT_0975 at 978.291 kb on + strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 974,771 - +1.3 974,781 - +1.3 974,798 - +0.4 974,845 + -1.5 975,993 - EX28DRAFT_0974 0.16 +0.2 976,485 - EX28DRAFT_0974 0.46 -1.7 976,492 - EX28DRAFT_0974 0.46 -1.2 976,637 - EX28DRAFT_0974 0.55 +0.0 976,966 - EX28DRAFT_0974 0.75 -1.3 977,508 + -2.3 977,546 - -0.3 977,548 - -0.2 977,548 - +1.8 977,548 - +0.8 977,609 + EX28DRAFT_0975 0.15 +0.1 978,066 + EX28DRAFT_0975 0.61 -1.2 978,262 + EX28DRAFT_0975 0.81 -2.7 978,263 - EX28DRAFT_0975 0.82 -2.5 978,291 + EX28DRAFT_0975 0.84 +0.4 978,292 - EX28DRAFT_0975 0.85 +0.6 978,292 - EX28DRAFT_0975 0.85 -0.4
Or see this region's nucleotide sequence