Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0677 and EX28DRAFT_0678 are separated by 93 nucleotides EX28DRAFT_0678 and EX28DRAFT_0679 are separated by 135 nucleotides EX28DRAFT_0679 and EX28DRAFT_0680 are separated by 508 nucleotides
EX28DRAFT_0677: EX28DRAFT_0677 - P pilus assembly protein, porin PapC, at 673,220 to 675,676
_0677
EX28DRAFT_0678: EX28DRAFT_0678 - P pilus assembly protein, chaperone PapD, at 675,770 to 676,462
_0678
EX28DRAFT_0679: EX28DRAFT_0679 - P pilus assembly protein, pilin FimA, at 676,598 to 677,173
_0679
EX28DRAFT_0680: EX28DRAFT_0680 - flagellar biosynthetic protein FlhB, at 677,682 to 678,830
_0680
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.746 kb on - strand at 675.795 kb on + strand at 675.901 kb on + strand, within EX28DRAFT_0678 at 675.955 kb on - strand, within EX28DRAFT_0678 at 676.147 kb on + strand, within EX28DRAFT_0678 at 676.149 kb on + strand, within EX28DRAFT_0678 at 676.150 kb on - strand, within EX28DRAFT_0678 at 676.150 kb on - strand, within EX28DRAFT_0678 at 676.298 kb on + strand, within EX28DRAFT_0678 at 676.366 kb on - strand, within EX28DRAFT_0678 at 676.729 kb on - strand, within EX28DRAFT_0679 at 676.729 kb on - strand, within EX28DRAFT_0679 at 676.765 kb on + strand, within EX28DRAFT_0679 at 676.855 kb on + strand, within EX28DRAFT_0679 at 676.957 kb on + strand, within EX28DRAFT_0679 at 676.957 kb on + strand, within EX28DRAFT_0679 at 676.958 kb on - strand, within EX28DRAFT_0679 at 676.996 kb on + strand, within EX28DRAFT_0679 at 676.996 kb on + strand, within EX28DRAFT_0679 at 677.002 kb on - strand, within EX28DRAFT_0679 at 677.021 kb on - strand, within EX28DRAFT_0679 at 677.540 kb on + strand at 677.540 kb on + strand at 677.541 kb on - strand at 677.541 kb on - strand at 677.607 kb on - strand at 677.662 kb on + strand at 677.776 kb on + strand at 677.800 kb on + strand, within EX28DRAFT_0680 at 677.813 kb on + strand, within EX28DRAFT_0680 at 677.813 kb on + strand, within EX28DRAFT_0680 at 677.813 kb on + strand, within EX28DRAFT_0680 at 677.814 kb on - strand, within EX28DRAFT_0680 at 677.925 kb on - strand, within EX28DRAFT_0680 at 677.925 kb on - strand, within EX28DRAFT_0680 at 677.933 kb on + strand, within EX28DRAFT_0680 at 677.934 kb on - strand, within EX28DRAFT_0680 at 677.934 kb on - strand, within EX28DRAFT_0680 at 678.165 kb on + strand, within EX28DRAFT_0680 at 678.166 kb on - strand, within EX28DRAFT_0680 at 678.166 kb on - strand, within EX28DRAFT_0680
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 675,746 - -0.6 675,795 + -0.4 675,901 + EX28DRAFT_0678 0.19 -0.5 675,955 - EX28DRAFT_0678 0.27 +0.4 676,147 + EX28DRAFT_0678 0.54 -0.4 676,149 + EX28DRAFT_0678 0.55 -1.3 676,150 - EX28DRAFT_0678 0.55 +1.8 676,150 - EX28DRAFT_0678 0.55 +1.1 676,298 + EX28DRAFT_0678 0.76 -1.1 676,366 - EX28DRAFT_0678 0.86 -2.5 676,729 - EX28DRAFT_0679 0.23 -2.2 676,729 - EX28DRAFT_0679 0.23 +0.3 676,765 + EX28DRAFT_0679 0.29 -1.6 676,855 + EX28DRAFT_0679 0.45 -1.3 676,957 + EX28DRAFT_0679 0.62 -2.6 676,957 + EX28DRAFT_0679 0.62 -1.6 676,958 - EX28DRAFT_0679 0.62 +0.8 676,996 + EX28DRAFT_0679 0.69 -2.1 676,996 + EX28DRAFT_0679 0.69 -1.4 677,002 - EX28DRAFT_0679 0.70 -1.2 677,021 - EX28DRAFT_0679 0.73 +2.5 677,540 + -0.1 677,540 + -0.6 677,541 - -2.0 677,541 - +0.9 677,607 - +0.8 677,662 + +2.1 677,776 + -1.0 677,800 + EX28DRAFT_0680 0.10 +1.4 677,813 + EX28DRAFT_0680 0.11 +1.3 677,813 + EX28DRAFT_0680 0.11 +0.8 677,813 + EX28DRAFT_0680 0.11 +1.0 677,814 - EX28DRAFT_0680 0.11 +1.0 677,925 - EX28DRAFT_0680 0.21 +0.6 677,925 - EX28DRAFT_0680 0.21 +0.8 677,933 + EX28DRAFT_0680 0.22 +0.8 677,934 - EX28DRAFT_0680 0.22 +0.9 677,934 - EX28DRAFT_0680 0.22 -2.5 678,165 + EX28DRAFT_0680 0.42 +0.3 678,166 - EX28DRAFT_0680 0.42 +0.4 678,166 - EX28DRAFT_0680 0.42 +1.6
Or see this region's nucleotide sequence