Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0569 and EX28DRAFT_0570 are separated by 141 nucleotides EX28DRAFT_0570 and EX28DRAFT_0571 are separated by 54 nucleotides EX28DRAFT_0571 and EX28DRAFT_0572 are separated by 164 nucleotides
EX28DRAFT_0569: EX28DRAFT_0569 - Transcriptional regulator, at 565,920 to 566,840
_0569
EX28DRAFT_0570: EX28DRAFT_0570 - Putative translation initiation inhibitor, yjgF family, at 566,982 to 567,383
_0570
EX28DRAFT_0571: EX28DRAFT_0571 - tRNA, at 567,438 to 567,513
_0571
EX28DRAFT_0572: EX28DRAFT_0572 - TonB-dependent siderophore receptor, at 567,678 to 569,867
_0572
Position (kb) 566
567
568 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 566.027 kb on - strand, within EX28DRAFT_0569 at 566.062 kb on - strand, within EX28DRAFT_0569 at 566.105 kb on - strand, within EX28DRAFT_0569 at 566.105 kb on - strand, within EX28DRAFT_0569 at 566.105 kb on - strand, within EX28DRAFT_0569 at 566.105 kb on - strand, within EX28DRAFT_0569 at 566.182 kb on + strand, within EX28DRAFT_0569 at 566.182 kb on + strand, within EX28DRAFT_0569 at 566.182 kb on + strand, within EX28DRAFT_0569 at 566.183 kb on - strand, within EX28DRAFT_0569 at 566.202 kb on - strand, within EX28DRAFT_0569 at 566.268 kb on + strand, within EX28DRAFT_0569 at 566.330 kb on - strand, within EX28DRAFT_0569 at 566.553 kb on + strand, within EX28DRAFT_0569 at 566.554 kb on - strand, within EX28DRAFT_0569 at 566.554 kb on - strand, within EX28DRAFT_0569 at 566.554 kb on - strand, within EX28DRAFT_0569 at 566.644 kb on + strand, within EX28DRAFT_0569 at 566.645 kb on - strand, within EX28DRAFT_0569 at 566.732 kb on + strand, within EX28DRAFT_0569 at 566.759 kb on + strand at 566.759 kb on + strand at 566.759 kb on + strand at 566.760 kb on - strand at 566.760 kb on - strand at 566.876 kb on + strand at 566.939 kb on + strand at 566.939 kb on + strand at 566.940 kb on - strand at 566.975 kb on + strand at 567.027 kb on + strand, within EX28DRAFT_0570 at 567.173 kb on + strand, within EX28DRAFT_0570 at 567.202 kb on + strand, within EX28DRAFT_0570 at 567.202 kb on + strand, within EX28DRAFT_0570 at 567.203 kb on - strand, within EX28DRAFT_0570 at 567.252 kb on - strand, within EX28DRAFT_0570 at 567.292 kb on - strand, within EX28DRAFT_0570 at 567.327 kb on + strand, within EX28DRAFT_0570 at 567.639 kb on + strand at 567.695 kb on - strand at 567.727 kb on + strand at 567.727 kb on + strand at 567.728 kb on - strand at 567.732 kb on - strand at 567.800 kb on - strand at 567.881 kb on + strand at 568.102 kb on + strand, within EX28DRAFT_0572 at 568.208 kb on - strand, within EX28DRAFT_0572 at 568.346 kb on - strand, within EX28DRAFT_0572
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 566,027 - EX28DRAFT_0569 0.12 -0.5 566,062 - EX28DRAFT_0569 0.15 +0.6 566,105 - EX28DRAFT_0569 0.20 +0.8 566,105 - EX28DRAFT_0569 0.20 +0.2 566,105 - EX28DRAFT_0569 0.20 -1.0 566,105 - EX28DRAFT_0569 0.20 -0.2 566,182 + EX28DRAFT_0569 0.28 -0.6 566,182 + EX28DRAFT_0569 0.28 -3.8 566,182 + EX28DRAFT_0569 0.28 +1.5 566,183 - EX28DRAFT_0569 0.29 -2.1 566,202 - EX28DRAFT_0569 0.31 -1.0 566,268 + EX28DRAFT_0569 0.38 -0.6 566,330 - EX28DRAFT_0569 0.45 +0.5 566,553 + EX28DRAFT_0569 0.69 -2.8 566,554 - EX28DRAFT_0569 0.69 +0.2 566,554 - EX28DRAFT_0569 0.69 -0.4 566,554 - EX28DRAFT_0569 0.69 +1.7 566,644 + EX28DRAFT_0569 0.79 +0.1 566,645 - EX28DRAFT_0569 0.79 +1.0 566,732 + EX28DRAFT_0569 0.88 -0.2 566,759 + -1.4 566,759 + +0.3 566,759 + -2.0 566,760 - -0.1 566,760 - +1.4 566,876 + -3.8 566,939 + -0.0 566,939 + +0.7 566,940 - -1.3 566,975 + -0.5 567,027 + EX28DRAFT_0570 0.11 -3.3 567,173 + EX28DRAFT_0570 0.48 +0.1 567,202 + EX28DRAFT_0570 0.55 +2.3 567,202 + EX28DRAFT_0570 0.55 -1.2 567,203 - EX28DRAFT_0570 0.55 +1.5 567,252 - EX28DRAFT_0570 0.67 +0.8 567,292 - EX28DRAFT_0570 0.77 +0.5 567,327 + EX28DRAFT_0570 0.86 +1.6 567,639 + +1.5 567,695 - -0.6 567,727 + -1.0 567,727 + +0.4 567,728 - -0.6 567,732 - -0.9 567,800 - -0.3 567,881 + -1.0 568,102 + EX28DRAFT_0572 0.19 -0.7 568,208 - EX28DRAFT_0572 0.24 +0.9 568,346 - EX28DRAFT_0572 0.31 -2.1
Or see this region's nucleotide sequence