Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0543

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0542 and EX28DRAFT_0543 are separated by 42 nucleotidesEX28DRAFT_0543 and EX28DRAFT_0544 are separated by 271 nucleotides EX28DRAFT_0542: EX28DRAFT_0542 - Nucleoside-diphosphate-sugar epimerases, at 535,481 to 536,305 _0542 EX28DRAFT_0543: EX28DRAFT_0543 - Transcriptional regulator, at 536,348 to 537,277 _0543 EX28DRAFT_0544: EX28DRAFT_0544 - Amino acid transporters, at 537,549 to 538,907 _0544 Position (kb) 536 537 538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 535.349 kb on + strandat 535.349 kb on + strandat 535.360 kb on + strandat 535.368 kb on - strandat 535.393 kb on - strandat 535.414 kb on - strandat 535.449 kb on - strandat 535.450 kb on + strandat 535.450 kb on + strandat 535.451 kb on - strandat 535.461 kb on + strandat 535.507 kb on - strandat 535.507 kb on - strandat 535.950 kb on + strand, within EX28DRAFT_0542at 535.951 kb on - strand, within EX28DRAFT_0542at 535.951 kb on - strand, within EX28DRAFT_0542at 536.076 kb on + strand, within EX28DRAFT_0542at 536.108 kb on + strand, within EX28DRAFT_0542at 536.109 kb on - strand, within EX28DRAFT_0542at 536.109 kb on - strand, within EX28DRAFT_0542at 536.109 kb on - strand, within EX28DRAFT_0542at 536.109 kb on - strand, within EX28DRAFT_0542at 536.109 kb on - strand, within EX28DRAFT_0542at 536.111 kb on - strand, within EX28DRAFT_0542at 536.111 kb on - strand, within EX28DRAFT_0542at 536.113 kb on + strand, within EX28DRAFT_0542at 536.113 kb on + strand, within EX28DRAFT_0542at 536.113 kb on + strand, within EX28DRAFT_0542at 536.114 kb on - strand, within EX28DRAFT_0542at 536.114 kb on - strand, within EX28DRAFT_0542at 536.114 kb on - strand, within EX28DRAFT_0542at 536.115 kb on + strand, within EX28DRAFT_0542at 536.115 kb on + strand, within EX28DRAFT_0542at 536.115 kb on + strand, within EX28DRAFT_0542at 536.115 kb on + strand, within EX28DRAFT_0542at 536.115 kb on + strand, within EX28DRAFT_0542at 536.116 kb on - strand, within EX28DRAFT_0542at 536.116 kb on - strand, within EX28DRAFT_0542at 536.116 kb on - strand, within EX28DRAFT_0542at 536.116 kb on - strand, within EX28DRAFT_0542at 536.116 kb on - strand, within EX28DRAFT_0542at 536.304 kb on - strandat 536.371 kb on + strandat 536.453 kb on + strand, within EX28DRAFT_0543at 536.453 kb on + strand, within EX28DRAFT_0543at 536.650 kb on + strand, within EX28DRAFT_0543at 536.651 kb on - strand, within EX28DRAFT_0543at 536.693 kb on + strand, within EX28DRAFT_0543at 536.694 kb on - strand, within EX28DRAFT_0543at 536.694 kb on - strand, within EX28DRAFT_0543at 536.856 kb on + strand, within EX28DRAFT_0543at 536.856 kb on + strand, within EX28DRAFT_0543at 536.857 kb on - strand, within EX28DRAFT_0543at 536.938 kb on - strand, within EX28DRAFT_0543at 537.021 kb on - strand, within EX28DRAFT_0543at 537.022 kb on + strand, within EX28DRAFT_0543at 537.022 kb on + strand, within EX28DRAFT_0543at 537.023 kb on - strand, within EX28DRAFT_0543at 537.045 kb on + strand, within EX28DRAFT_0543at 537.070 kb on - strand, within EX28DRAFT_0543at 537.096 kb on + strand, within EX28DRAFT_0543at 537.096 kb on + strand, within EX28DRAFT_0543at 537.096 kb on + strand, within EX28DRAFT_0543at 537.097 kb on - strand, within EX28DRAFT_0543at 537.126 kb on + strand, within EX28DRAFT_0543at 537.223 kb on + strandat 537.223 kb on + strandat 537.243 kb on - strandat 537.310 kb on - strandat 537.375 kb on + strandat 537.376 kb on - strandat 537.376 kb on - strandat 537.419 kb on - strandat 537.450 kb on - strandat 537.453 kb on + strandat 537.453 kb on + strandat 537.453 kb on + strandat 537.453 kb on + strandat 537.453 kb on + strandat 537.454 kb on - strandat 537.457 kb on + strandat 537.458 kb on - strandat 537.515 kb on + strandat 537.545 kb on - strandat 537.548 kb on + strandat 537.549 kb on - strandat 537.549 kb on - strandat 537.549 kb on - strandat 537.549 kb on - strandat 537.593 kb on + strandat 537.594 kb on - strandat 537.602 kb on + strandat 537.620 kb on + strandat 537.636 kb on + strandat 537.637 kb on - strandat 537.637 kb on - strandat 537.637 kb on - strandat 537.638 kb on + strandat 537.795 kb on + strand, within EX28DRAFT_0544at 537.801 kb on + strand, within EX28DRAFT_0544at 537.802 kb on - strand, within EX28DRAFT_0544at 537.837 kb on - strand, within EX28DRAFT_0544at 537.968 kb on + strand, within EX28DRAFT_0544at 537.995 kb on + strand, within EX28DRAFT_0544at 537.995 kb on + strand, within EX28DRAFT_0544at 538.013 kb on + strand, within EX28DRAFT_0544

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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535,349 + +3.6
535,349 + +0.1
535,360 + -0.1
535,368 - +0.5
535,393 - -0.8
535,414 - -1.7
535,449 - +0.7
535,450 + -0.2
535,450 + +0.0
535,451 - -2.4
535,461 + +1.1
535,507 - +0.0
535,507 - +0.0
535,950 + EX28DRAFT_0542 0.57 -0.8
535,951 - EX28DRAFT_0542 0.57 -0.9
535,951 - EX28DRAFT_0542 0.57 +0.1
536,076 + EX28DRAFT_0542 0.72 +1.0
536,108 + EX28DRAFT_0542 0.76 -0.3
536,109 - EX28DRAFT_0542 0.76 +0.7
536,109 - EX28DRAFT_0542 0.76 +0.7
536,109 - EX28DRAFT_0542 0.76 +0.7
536,109 - EX28DRAFT_0542 0.76 +0.0
536,109 - EX28DRAFT_0542 0.76 +1.0
536,111 - EX28DRAFT_0542 0.76 -0.0
536,111 - EX28DRAFT_0542 0.76 +0.2
536,113 + EX28DRAFT_0542 0.77 -0.3
536,113 + EX28DRAFT_0542 0.77 +1.2
536,113 + EX28DRAFT_0542 0.77 -0.5
536,114 - EX28DRAFT_0542 0.77 -0.5
536,114 - EX28DRAFT_0542 0.77 +0.4
536,114 - EX28DRAFT_0542 0.77 +0.2
536,115 + EX28DRAFT_0542 0.77 +0.7
536,115 + EX28DRAFT_0542 0.77 -1.4
536,115 + EX28DRAFT_0542 0.77 +1.4
536,115 + EX28DRAFT_0542 0.77 -0.4
536,115 + EX28DRAFT_0542 0.77 +3.2
536,116 - EX28DRAFT_0542 0.77 -1.2
536,116 - EX28DRAFT_0542 0.77 -0.4
536,116 - EX28DRAFT_0542 0.77 -0.6
536,116 - EX28DRAFT_0542 0.77 +2.1
536,116 - EX28DRAFT_0542 0.77 -0.1
536,304 - -1.5
536,371 + -0.1
536,453 + EX28DRAFT_0543 0.11 -0.5
536,453 + EX28DRAFT_0543 0.11 +0.5
536,650 + EX28DRAFT_0543 0.32 -0.6
536,651 - EX28DRAFT_0543 0.33 +0.2
536,693 + EX28DRAFT_0543 0.37 -1.7
536,694 - EX28DRAFT_0543 0.37 +2.0
536,694 - EX28DRAFT_0543 0.37 -2.9
536,856 + EX28DRAFT_0543 0.55 -2.9
536,856 + EX28DRAFT_0543 0.55 -1.1
536,857 - EX28DRAFT_0543 0.55 -2.3
536,938 - EX28DRAFT_0543 0.63 -1.2
537,021 - EX28DRAFT_0543 0.72 -1.8
537,022 + EX28DRAFT_0543 0.72 +2.4
537,022 + EX28DRAFT_0543 0.72 +0.6
537,023 - EX28DRAFT_0543 0.73 -0.4
537,045 + EX28DRAFT_0543 0.75 -0.9
537,070 - EX28DRAFT_0543 0.78 +0.3
537,096 + EX28DRAFT_0543 0.80 -1.1
537,096 + EX28DRAFT_0543 0.80 -0.1
537,096 + EX28DRAFT_0543 0.80 +0.5
537,097 - EX28DRAFT_0543 0.81 +0.2
537,126 + EX28DRAFT_0543 0.84 +0.4
537,223 + +1.1
537,223 + -0.3
537,243 - -1.4
537,310 - +2.6
537,375 + -2.6
537,376 - +0.9
537,376 - +3.4
537,419 - -2.9
537,450 - +0.5
537,453 + +0.2
537,453 + -0.2
537,453 + +0.1
537,453 + -1.3
537,453 + -1.7
537,454 - -0.3
537,457 + +0.3
537,458 - -1.0
537,515 + +1.9
537,545 - -1.1
537,548 + +1.6
537,549 - +2.2
537,549 - -3.1
537,549 - -1.8
537,549 - +1.4
537,593 + -0.4
537,594 - -4.7
537,602 + +0.5
537,620 + -2.3
537,636 + +0.8
537,637 - -0.3
537,637 - -0.6
537,637 - +0.7
537,638 + +0.1
537,795 + EX28DRAFT_0544 0.18 -1.2
537,801 + EX28DRAFT_0544 0.19 -0.4
537,802 - EX28DRAFT_0544 0.19 -1.4
537,837 - EX28DRAFT_0544 0.21 +0.6
537,968 + EX28DRAFT_0544 0.31 +0.6
537,995 + EX28DRAFT_0544 0.33 +1.1
537,995 + EX28DRAFT_0544 0.33 +1.0
538,013 + EX28DRAFT_0544 0.34 +0.4

Or see this region's nucleotide sequence