Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0467 and EX28DRAFT_0468 are separated by 372 nucleotides EX28DRAFT_0468 and EX28DRAFT_0469 overlap by 4 nucleotides EX28DRAFT_0469 and EX28DRAFT_0470 are separated by 42 nucleotides
EX28DRAFT_0467: EX28DRAFT_0467 - hypothetical protein, at 450,649 to 451,281
_0467
EX28DRAFT_0468: EX28DRAFT_0468 - hydroxyethylthiazole kinase, at 451,654 to 452,424
_0468
EX28DRAFT_0469: EX28DRAFT_0469 - hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 452,421 to 453,221
_0469
EX28DRAFT_0470: EX28DRAFT_0470 - Transcriptional regulators, at 453,264 to 454,010
_0470
Position (kb) 451
452
453 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 450.660 kb on + strand at 450.660 kb on + strand at 450.660 kb on + strand at 450.687 kb on + strand at 450.688 kb on - strand at 450.756 kb on + strand, within EX28DRAFT_0467 at 450.757 kb on - strand, within EX28DRAFT_0467 at 450.842 kb on - strand, within EX28DRAFT_0467 at 450.846 kb on - strand, within EX28DRAFT_0467 at 450.880 kb on + strand, within EX28DRAFT_0467 at 450.880 kb on + strand, within EX28DRAFT_0467 at 450.881 kb on - strand, within EX28DRAFT_0467 at 450.885 kb on + strand, within EX28DRAFT_0467 at 450.936 kb on + strand, within EX28DRAFT_0467 at 450.936 kb on + strand, within EX28DRAFT_0467 at 450.994 kb on - strand, within EX28DRAFT_0467 at 451.074 kb on - strand, within EX28DRAFT_0467 at 451.101 kb on + strand, within EX28DRAFT_0467 at 451.102 kb on - strand, within EX28DRAFT_0467 at 451.117 kb on - strand, within EX28DRAFT_0467 at 451.141 kb on + strand, within EX28DRAFT_0467 at 451.256 kb on - strand at 451.259 kb on + strand at 451.260 kb on - strand at 451.296 kb on + strand at 451.297 kb on - strand at 451.318 kb on + strand at 451.319 kb on - strand at 451.369 kb on - strand at 451.385 kb on + strand at 451.385 kb on + strand at 451.385 kb on + strand at 451.385 kb on + strand at 451.390 kb on + strand at 451.390 kb on + strand at 451.390 kb on + strand at 451.390 kb on + strand at 451.391 kb on - strand at 451.470 kb on - strand at 451.569 kb on + strand at 451.572 kb on + strand at 451.572 kb on + strand at 451.677 kb on - strand at 451.740 kb on - strand, within EX28DRAFT_0468 at 451.857 kb on + strand, within EX28DRAFT_0468 at 451.899 kb on - strand, within EX28DRAFT_0468 at 452.401 kb on + strand at 452.402 kb on - strand at 452.703 kb on - strand, within EX28DRAFT_0469 at 452.806 kb on + strand, within EX28DRAFT_0469 at 453.008 kb on - strand, within EX28DRAFT_0469
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 450,660 + -0.9 450,660 + +0.1 450,660 + -0.1 450,687 + -4.6 450,688 - -3.0 450,756 + EX28DRAFT_0467 0.17 -0.2 450,757 - EX28DRAFT_0467 0.17 +0.7 450,842 - EX28DRAFT_0467 0.30 +0.7 450,846 - EX28DRAFT_0467 0.31 +0.2 450,880 + EX28DRAFT_0467 0.36 +0.3 450,880 + EX28DRAFT_0467 0.36 -0.2 450,881 - EX28DRAFT_0467 0.37 -0.5 450,885 + EX28DRAFT_0467 0.37 -1.6 450,936 + EX28DRAFT_0467 0.45 +1.3 450,936 + EX28DRAFT_0467 0.45 +0.6 450,994 - EX28DRAFT_0467 0.55 +0.4 451,074 - EX28DRAFT_0467 0.67 -0.1 451,101 + EX28DRAFT_0467 0.71 +0.6 451,102 - EX28DRAFT_0467 0.72 -0.9 451,117 - EX28DRAFT_0467 0.74 -1.6 451,141 + EX28DRAFT_0467 0.78 +0.1 451,256 - -1.6 451,259 + -0.5 451,260 - -0.7 451,296 + -0.1 451,297 - -0.3 451,318 + -0.3 451,319 - -0.4 451,369 - -0.6 451,385 + -1.0 451,385 + -0.4 451,385 + -0.0 451,385 + +0.5 451,390 + -0.6 451,390 + -0.4 451,390 + +1.4 451,390 + -1.1 451,391 - +0.2 451,470 - +0.9 451,569 + -1.0 451,572 + -0.3 451,572 + -1.7 451,677 - -0.3 451,740 - EX28DRAFT_0468 0.11 -0.2 451,857 + EX28DRAFT_0468 0.26 -2.3 451,899 - EX28DRAFT_0468 0.32 -2.8 452,401 + +3.8 452,402 - -2.4 452,703 - EX28DRAFT_0469 0.35 +0.1 452,806 + EX28DRAFT_0469 0.48 -0.6 453,008 - EX28DRAFT_0469 0.73 +1.8
Or see this region's nucleotide sequence