Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0398

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0396 and EX28DRAFT_0397 are separated by 47 nucleotidesEX28DRAFT_0397 and EX28DRAFT_0398 are separated by 64 nucleotidesEX28DRAFT_0398 and EX28DRAFT_0399 are separated by 97 nucleotides EX28DRAFT_0396: EX28DRAFT_0396 - PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIC component, at 370,219 to 371,904 _0396 EX28DRAFT_0397: EX28DRAFT_0397 - Endonuclease IV (EC 3.1.21.-), at 371,952 to 372,809 _0397 EX28DRAFT_0398: EX28DRAFT_0398 - conserved hypothetical integral membrane protein, at 372,874 to 373,920 _0398 EX28DRAFT_0399: EX28DRAFT_0399 - Transcriptional regulator, at 374,018 to 374,884 _0399 Position (kb) 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 372.069 kb on - strand, within EX28DRAFT_0397at 372.179 kb on - strand, within EX28DRAFT_0397at 372.182 kb on + strand, within EX28DRAFT_0397at 372.182 kb on + strand, within EX28DRAFT_0397at 372.183 kb on - strand, within EX28DRAFT_0397at 372.183 kb on - strand, within EX28DRAFT_0397at 372.192 kb on + strand, within EX28DRAFT_0397at 372.192 kb on + strand, within EX28DRAFT_0397at 372.283 kb on - strand, within EX28DRAFT_0397at 372.300 kb on - strand, within EX28DRAFT_0397at 372.434 kb on + strand, within EX28DRAFT_0397at 372.434 kb on + strand, within EX28DRAFT_0397at 372.525 kb on + strand, within EX28DRAFT_0397at 372.525 kb on + strand, within EX28DRAFT_0397at 372.526 kb on - strand, within EX28DRAFT_0397at 372.526 kb on - strand, within EX28DRAFT_0397at 372.596 kb on - strand, within EX28DRAFT_0397at 372.634 kb on + strand, within EX28DRAFT_0397at 372.635 kb on - strand, within EX28DRAFT_0397at 372.635 kb on - strand, within EX28DRAFT_0397at 372.635 kb on - strand, within EX28DRAFT_0397at 372.802 kb on + strandat 372.839 kb on - strandat 372.839 kb on - strandat 373.092 kb on + strand, within EX28DRAFT_0398at 373.092 kb on + strand, within EX28DRAFT_0398at 373.098 kb on + strand, within EX28DRAFT_0398at 373.179 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.370 kb on + strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.732 kb on - strand, within EX28DRAFT_0398at 373.746 kb on + strand, within EX28DRAFT_0398at 373.746 kb on + strand, within EX28DRAFT_0398at 373.750 kb on + strand, within EX28DRAFT_0398at 373.891 kb on - strandat 373.903 kb on + strandat 373.904 kb on - strandat 373.904 kb on - strandat 373.921 kb on - strandat 373.983 kb on + strandat 374.217 kb on - strand, within EX28DRAFT_0399at 374.321 kb on + strand, within EX28DRAFT_0399at 374.321 kb on + strand, within EX28DRAFT_0399at 374.322 kb on - strand, within EX28DRAFT_0399at 374.882 kb on + strandat 374.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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372,069 - EX28DRAFT_0397 0.14 +1.3
372,179 - EX28DRAFT_0397 0.26 +0.5
372,182 + EX28DRAFT_0397 0.27 -0.4
372,182 + EX28DRAFT_0397 0.27 -1.9
372,183 - EX28DRAFT_0397 0.27 +1.0
372,183 - EX28DRAFT_0397 0.27 +0.6
372,192 + EX28DRAFT_0397 0.28 +1.2
372,192 + EX28DRAFT_0397 0.28 +0.4
372,283 - EX28DRAFT_0397 0.39 +0.2
372,300 - EX28DRAFT_0397 0.41 +0.2
372,434 + EX28DRAFT_0397 0.56 -0.2
372,434 + EX28DRAFT_0397 0.56 +1.1
372,525 + EX28DRAFT_0397 0.67 +0.5
372,525 + EX28DRAFT_0397 0.67 +0.4
372,526 - EX28DRAFT_0397 0.67 -0.3
372,526 - EX28DRAFT_0397 0.67 +1.1
372,596 - EX28DRAFT_0397 0.75 -2.7
372,634 + EX28DRAFT_0397 0.79 +1.0
372,635 - EX28DRAFT_0397 0.80 -0.7
372,635 - EX28DRAFT_0397 0.80 -0.4
372,635 - EX28DRAFT_0397 0.80 -0.2
372,802 + +0.5
372,839 - +0.8
372,839 - +1.0
373,092 + EX28DRAFT_0398 0.21 -0.2
373,092 + EX28DRAFT_0398 0.21 -2.2
373,098 + EX28DRAFT_0398 0.21 +0.6
373,179 + EX28DRAFT_0398 0.29 -0.4
373,325 + EX28DRAFT_0398 0.43 +0.1
373,325 + EX28DRAFT_0398 0.43 +0.6
373,325 + EX28DRAFT_0398 0.43 -1.2
373,325 + EX28DRAFT_0398 0.43 -0.8
373,326 - EX28DRAFT_0398 0.43 -2.0
373,326 - EX28DRAFT_0398 0.43 +0.1
373,326 - EX28DRAFT_0398 0.43 -1.4
373,370 + EX28DRAFT_0398 0.47 +0.4
373,371 - EX28DRAFT_0398 0.47 +1.0
373,371 - EX28DRAFT_0398 0.47 +0.1
373,371 - EX28DRAFT_0398 0.47 +0.4
373,732 - EX28DRAFT_0398 0.82 -1.8
373,746 + EX28DRAFT_0398 0.83 -3.2
373,746 + EX28DRAFT_0398 0.83 -0.3
373,750 + EX28DRAFT_0398 0.84 +1.8
373,891 - +1.7
373,903 + +0.3
373,904 - +0.8
373,904 - -0.4
373,921 - -2.5
373,983 + -1.0
374,217 - EX28DRAFT_0399 0.23 -0.2
374,321 + EX28DRAFT_0399 0.35 +0.1
374,321 + EX28DRAFT_0399 0.35 +0.7
374,322 - EX28DRAFT_0399 0.35 +1.0
374,882 + -1.8
374,883 - -0.4

Or see this region's nucleotide sequence