Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0388 and EX28DRAFT_0389 are separated by 124 nucleotides EX28DRAFT_0389 and EX28DRAFT_0390 are separated by 205 nucleotides
EX28DRAFT_0388: EX28DRAFT_0388 - Putative GTPases (G3E family), at 361,512 to 362,498
_0388
EX28DRAFT_0389: EX28DRAFT_0389 - Mannitol-1-phosphate/altronate dehydrogenases, at 362,623 to 364,089
_0389
EX28DRAFT_0390: EX28DRAFT_0390 - mannonate dehydratase, at 364,295 to 365,485
_0390
Position (kb) 362
363
364
365 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 361.768 kb on - strand, within EX28DRAFT_0388 at 361.808 kb on + strand, within EX28DRAFT_0388 at 362.170 kb on + strand, within EX28DRAFT_0388 at 362.188 kb on - strand, within EX28DRAFT_0388 at 362.526 kb on + strand at 362.526 kb on + strand at 362.526 kb on + strand at 362.526 kb on + strand at 362.527 kb on - strand at 362.527 kb on - strand at 362.528 kb on + strand at 362.534 kb on + strand at 362.535 kb on - strand at 362.681 kb on + strand at 362.682 kb on - strand at 362.787 kb on + strand, within EX28DRAFT_0389 at 363.073 kb on + strand, within EX28DRAFT_0389 at 363.074 kb on - strand, within EX28DRAFT_0389 at 363.147 kb on + strand, within EX28DRAFT_0389 at 363.159 kb on - strand, within EX28DRAFT_0389 at 363.179 kb on + strand, within EX28DRAFT_0389 at 363.180 kb on - strand, within EX28DRAFT_0389 at 363.180 kb on - strand, within EX28DRAFT_0389 at 363.297 kb on + strand, within EX28DRAFT_0389 at 363.726 kb on + strand, within EX28DRAFT_0389 at 363.756 kb on + strand, within EX28DRAFT_0389 at 363.922 kb on - strand, within EX28DRAFT_0389 at 364.095 kb on - strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.211 kb on + strand at 364.212 kb on - strand at 364.212 kb on - strand at 364.212 kb on - strand at 364.212 kb on - strand at 364.212 kb on - strand at 364.212 kb on - strand at 364.212 kb on - strand at 364.242 kb on + strand at 364.243 kb on - strand at 364.317 kb on - strand at 364.393 kb on + strand at 364.411 kb on - strand at 364.526 kb on + strand, within EX28DRAFT_0390 at 364.527 kb on - strand, within EX28DRAFT_0390 at 364.543 kb on + strand, within EX28DRAFT_0390 at 364.543 kb on + strand, within EX28DRAFT_0390 at 364.589 kb on - strand, within EX28DRAFT_0390 at 364.742 kb on + strand, within EX28DRAFT_0390 at 364.743 kb on - strand, within EX28DRAFT_0390 at 364.822 kb on + strand, within EX28DRAFT_0390 at 364.822 kb on + strand, within EX28DRAFT_0390 at 364.857 kb on - strand, within EX28DRAFT_0390 at 364.859 kb on - strand, within EX28DRAFT_0390 at 364.906 kb on + strand, within EX28DRAFT_0390 at 365.053 kb on + strand, within EX28DRAFT_0390 at 365.053 kb on + strand, within EX28DRAFT_0390 at 365.054 kb on - strand, within EX28DRAFT_0390 at 365.054 kb on - strand, within EX28DRAFT_0390 at 365.076 kb on + strand, within EX28DRAFT_0390 at 365.087 kb on + strand, within EX28DRAFT_0390 at 365.087 kb on + strand, within EX28DRAFT_0390 at 365.087 kb on + strand, within EX28DRAFT_0390 at 365.087 kb on + strand, within EX28DRAFT_0390 at 365.088 kb on - strand, within EX28DRAFT_0390 at 365.088 kb on - strand, within EX28DRAFT_0390 at 365.088 kb on - strand, within EX28DRAFT_0390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 361,768 - EX28DRAFT_0388 0.26 +0.5 361,808 + EX28DRAFT_0388 0.30 -0.4 362,170 + EX28DRAFT_0388 0.67 +0.8 362,188 - EX28DRAFT_0388 0.68 +0.0 362,526 + -2.3 362,526 + +1.4 362,526 + -0.8 362,526 + +0.5 362,527 - -1.0 362,527 - -0.8 362,528 + +0.7 362,534 + -1.7 362,535 - -1.1 362,681 + +1.6 362,682 - -0.2 362,787 + EX28DRAFT_0389 0.11 -0.3 363,073 + EX28DRAFT_0389 0.31 -2.6 363,074 - EX28DRAFT_0389 0.31 -2.8 363,147 + EX28DRAFT_0389 0.36 +1.4 363,159 - EX28DRAFT_0389 0.37 +0.5 363,179 + EX28DRAFT_0389 0.38 -0.1 363,180 - EX28DRAFT_0389 0.38 +1.8 363,180 - EX28DRAFT_0389 0.38 -0.2 363,297 + EX28DRAFT_0389 0.46 +0.3 363,726 + EX28DRAFT_0389 0.75 -0.4 363,756 + EX28DRAFT_0389 0.77 -1.5 363,922 - EX28DRAFT_0389 0.89 +0.3 364,095 - +0.1 364,211 + -1.0 364,211 + -0.0 364,211 + -0.5 364,211 + -3.8 364,211 + -0.3 364,211 + +0.0 364,211 + +0.1 364,211 + +0.3 364,211 + +0.2 364,211 + +0.2 364,211 + +0.4 364,212 - +2.4 364,212 - -0.6 364,212 - -2.6 364,212 - -0.4 364,212 - -0.6 364,212 - -0.9 364,212 - +0.5 364,242 + +0.3 364,243 - -0.8 364,317 - +0.7 364,393 + -0.2 364,411 - +4.9 364,526 + EX28DRAFT_0390 0.19 +0.6 364,527 - EX28DRAFT_0390 0.19 -0.2 364,543 + EX28DRAFT_0390 0.21 +0.9 364,543 + EX28DRAFT_0390 0.21 -1.4 364,589 - EX28DRAFT_0390 0.25 +0.3 364,742 + EX28DRAFT_0390 0.38 +0.1 364,743 - EX28DRAFT_0390 0.38 -1.3 364,822 + EX28DRAFT_0390 0.44 -0.0 364,822 + EX28DRAFT_0390 0.44 +0.0 364,857 - EX28DRAFT_0390 0.47 +0.9 364,859 - EX28DRAFT_0390 0.47 +1.5 364,906 + EX28DRAFT_0390 0.51 -3.2 365,053 + EX28DRAFT_0390 0.64 +0.0 365,053 + EX28DRAFT_0390 0.64 +0.3 365,054 - EX28DRAFT_0390 0.64 +0.1 365,054 - EX28DRAFT_0390 0.64 -1.7 365,076 + EX28DRAFT_0390 0.66 -1.1 365,087 + EX28DRAFT_0390 0.66 +0.9 365,087 + EX28DRAFT_0390 0.66 -3.9 365,087 + EX28DRAFT_0390 0.66 -0.1 365,087 + EX28DRAFT_0390 0.66 +0.6 365,088 - EX28DRAFT_0390 0.67 +0.5 365,088 - EX28DRAFT_0390 0.67 -1.0 365,088 - EX28DRAFT_0390 0.67 +0.4
Or see this region's nucleotide sequence