Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0134

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0133 and EX28DRAFT_0134 are separated by 299 nucleotidesEX28DRAFT_0134 and EX28DRAFT_0135 are separated by 55 nucleotidesEX28DRAFT_0135 and EX28DRAFT_0136 overlap by 4 nucleotidesEX28DRAFT_0136 and EX28DRAFT_0137 are separated by 0 nucleotides EX28DRAFT_0133: EX28DRAFT_0133 - ribosome-associated GTPase EngA, at 76,519 to 77,991 _0133 EX28DRAFT_0134: EX28DRAFT_0134 - amino acid/peptide transporter (Peptide:H+ symporter), bacterial, at 78,291 to 79,835 _0134 EX28DRAFT_0135: EX28DRAFT_0135 - replication restart DNA helicase PriA, at 79,891 to 80,112 _0135 EX28DRAFT_0136: EX28DRAFT_0136 - hypothetical protein, at 80,109 to 80,459 _0136 EX28DRAFT_0137: EX28DRAFT_0137 - Thermolysin metallopeptidase, alpha-helical domain/Thermolysin metallopeptidase, catalytic domain, at 80,460 to 81,479 _0137 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 77.989 kb on + strandat 78.227 kb on + strandat 78.227 kb on + strandat 78.227 kb on + strandat 78.228 kb on - strandat 78.228 kb on - strandat 78.232 kb on - strandat 78.258 kb on + strandat 78.259 kb on - strandat 78.259 kb on - strandat 78.274 kb on + strandat 78.290 kb on + strandat 78.290 kb on + strandat 78.507 kb on + strand, within EX28DRAFT_0134at 78.507 kb on + strand, within EX28DRAFT_0134at 78.508 kb on - strand, within EX28DRAFT_0134at 78.508 kb on - strand, within EX28DRAFT_0134at 78.766 kb on - strand, within EX28DRAFT_0134at 78.766 kb on - strand, within EX28DRAFT_0134at 78.766 kb on - strand, within EX28DRAFT_0134at 78.766 kb on - strand, within EX28DRAFT_0134at 78.767 kb on + strand, within EX28DRAFT_0134at 78.780 kb on - strand, within EX28DRAFT_0134at 78.884 kb on + strand, within EX28DRAFT_0134at 78.922 kb on - strand, within EX28DRAFT_0134at 79.117 kb on - strand, within EX28DRAFT_0134at 79.117 kb on - strand, within EX28DRAFT_0134at 79.125 kb on + strand, within EX28DRAFT_0134at 79.184 kb on + strand, within EX28DRAFT_0134at 79.264 kb on - strand, within EX28DRAFT_0134at 79.355 kb on + strand, within EX28DRAFT_0134at 79.356 kb on - strand, within EX28DRAFT_0134at 79.890 kb on + strandat 79.890 kb on + strandat 79.890 kb on + strandat 79.891 kb on - strandat 79.891 kb on - strandat 79.891 kb on - strandat 79.962 kb on + strand, within EX28DRAFT_0135at 79.963 kb on - strand, within EX28DRAFT_0135at 79.963 kb on - strand, within EX28DRAFT_0135at 79.965 kb on + strand, within EX28DRAFT_0135at 80.009 kb on + strand, within EX28DRAFT_0135at 80.009 kb on + strand, within EX28DRAFT_0135at 80.010 kb on - strand, within EX28DRAFT_0135at 80.018 kb on + strand, within EX28DRAFT_0135at 80.018 kb on + strand, within EX28DRAFT_0135at 80.022 kb on - strand, within EX28DRAFT_0135at 80.070 kb on + strand, within EX28DRAFT_0135at 80.070 kb on + strand, within EX28DRAFT_0135at 80.071 kb on - strand, within EX28DRAFT_0135at 80.076 kb on + strand, within EX28DRAFT_0135at 80.110 kb on + strandat 80.393 kb on + strand, within EX28DRAFT_0136at 80.461 kb on + strandat 80.461 kb on + strandat 80.462 kb on - strandat 80.462 kb on - strandat 80.605 kb on + strand, within EX28DRAFT_0137at 80.662 kb on + strand, within EX28DRAFT_0137

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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77,989 + -2.8
78,227 + -1.8
78,227 + -1.2
78,227 + +1.2
78,228 - +0.8
78,228 - -0.5
78,232 - +1.5
78,258 + +1.5
78,259 - +0.7
78,259 - -1.0
78,274 + -2.7
78,290 + +0.5
78,290 + +0.1
78,507 + EX28DRAFT_0134 0.14 -0.3
78,507 + EX28DRAFT_0134 0.14 -1.8
78,508 - EX28DRAFT_0134 0.14 +1.1
78,508 - EX28DRAFT_0134 0.14 -1.2
78,766 - EX28DRAFT_0134 0.31 -0.2
78,766 - EX28DRAFT_0134 0.31 -1.4
78,766 - EX28DRAFT_0134 0.31 -0.1
78,766 - EX28DRAFT_0134 0.31 -1.4
78,767 + EX28DRAFT_0134 0.31 +1.0
78,780 - EX28DRAFT_0134 0.32 -1.8
78,884 + EX28DRAFT_0134 0.38 +0.2
78,922 - EX28DRAFT_0134 0.41 +1.2
79,117 - EX28DRAFT_0134 0.53 -0.5
79,117 - EX28DRAFT_0134 0.53 -1.1
79,125 + EX28DRAFT_0134 0.54 -0.2
79,184 + EX28DRAFT_0134 0.58 -0.1
79,264 - EX28DRAFT_0134 0.63 +1.6
79,355 + EX28DRAFT_0134 0.69 +0.4
79,356 - EX28DRAFT_0134 0.69 -0.5
79,890 + -1.2
79,890 + +0.6
79,890 + -0.6
79,891 - +0.6
79,891 - -0.2
79,891 - -0.3
79,962 + EX28DRAFT_0135 0.32 -0.0
79,963 - EX28DRAFT_0135 0.32 +0.5
79,963 - EX28DRAFT_0135 0.32 -1.7
79,965 + EX28DRAFT_0135 0.33 +0.4
80,009 + EX28DRAFT_0135 0.53 -0.6
80,009 + EX28DRAFT_0135 0.53 +0.5
80,010 - EX28DRAFT_0135 0.54 -0.8
80,018 + EX28DRAFT_0135 0.57 -0.5
80,018 + EX28DRAFT_0135 0.57 +0.2
80,022 - EX28DRAFT_0135 0.59 +0.2
80,070 + EX28DRAFT_0135 0.81 +1.3
80,070 + EX28DRAFT_0135 0.81 +0.1
80,071 - EX28DRAFT_0135 0.81 +0.3
80,076 + EX28DRAFT_0135 0.83 -0.7
80,110 + -3.2
80,393 + EX28DRAFT_0136 0.81 +0.4
80,461 + -0.5
80,461 + -0.6
80,462 - +0.6
80,462 - +2.7
80,605 + EX28DRAFT_0137 0.14 +0.3
80,662 + EX28DRAFT_0137 0.20 -2.7

Or see this region's nucleotide sequence