Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02759 and CCNA_02760 are separated by 60 nucleotides CCNA_02760 and CCNA_03976 overlap by 1 nucleotides CCNA_03976 and CCNA_02761 overlap by 11 nucleotides CCNA_02761 and CCNA_02762 are separated by 205 nucleotides
CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135
_02759
CCNA_02760: CCNA_02760 - hypothetical protein, at 2,923,196 to 2,923,462
_02760
CCNA_03976: CCNA_03976 - hypothetical protein, at 2,923,462 to 2,923,683
_03976
CCNA_02761: CCNA_02761 - hypothetical protein, at 2,923,673 to 2,923,918
_02761
CCNA_02762: CCNA_02762 - DNA repair protein RadC, at 2,924,124 to 2,924,789
_02762
Position (kb)
2923
2924 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2923.108 kb on + strand at 2923.116 kb on - strand at 2923.242 kb on + strand, within CCNA_02760 at 2923.250 kb on - strand, within CCNA_02760 at 2923.260 kb on - strand, within CCNA_02760 at 2923.297 kb on + strand, within CCNA_02760 at 2923.352 kb on + strand, within CCNA_02760 at 2923.372 kb on + strand, within CCNA_02760 at 2923.408 kb on - strand, within CCNA_02760 at 2923.423 kb on + strand, within CCNA_02760 at 2923.477 kb on - strand at 2923.500 kb on + strand, within CCNA_03976 at 2923.563 kb on - strand, within CCNA_03976 at 2923.568 kb on - strand, within CCNA_03976 at 2923.684 kb on + strand at 2923.692 kb on - strand at 2923.712 kb on - strand, within CCNA_02761 at 2923.712 kb on - strand, within CCNA_02761 at 2923.786 kb on - strand, within CCNA_02761 at 2923.791 kb on - strand, within CCNA_02761 at 2923.834 kb on + strand, within CCNA_02761 at 2923.851 kb on + strand, within CCNA_02761 at 2923.856 kb on + strand, within CCNA_02761 at 2923.864 kb on - strand, within CCNA_02761 at 2923.885 kb on + strand, within CCNA_02761 at 2923.907 kb on - strand at 2923.912 kb on - strand at 2923.968 kb on - strand at 2923.995 kb on + strand at 2924.005 kb on - strand at 2924.108 kb on - strand at 2924.134 kb on - strand at 2924.188 kb on - strand at 2924.193 kb on + strand, within CCNA_02762 at 2924.238 kb on - strand, within CCNA_02762 at 2924.238 kb on - strand, within CCNA_02762 at 2924.243 kb on - strand, within CCNA_02762 at 2924.248 kb on + strand, within CCNA_02762 at 2924.276 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.307 kb on - strand, within CCNA_02762 at 2924.307 kb on - strand, within CCNA_02762 at 2924.307 kb on - strand, within CCNA_02762 at 2924.324 kb on + strand, within CCNA_02762 at 2924.324 kb on + strand, within CCNA_02762 at 2924.332 kb on - strand, within CCNA_02762 at 2924.360 kb on + strand, within CCNA_02762 at 2924.368 kb on - strand, within CCNA_02762 at 2924.368 kb on - strand, within CCNA_02762 at 2924.380 kb on - strand, within CCNA_02762 at 2924.393 kb on + strand, within CCNA_02762 at 2924.423 kb on + strand, within CCNA_02762 at 2924.429 kb on - strand, within CCNA_02762 at 2924.431 kb on - strand, within CCNA_02762 at 2924.441 kb on - strand, within CCNA_02762 at 2924.533 kb on + strand, within CCNA_02762 at 2924.540 kb on - strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.573 kb on + strand, within CCNA_02762 at 2924.581 kb on - strand, within CCNA_02762 at 2924.594 kb on + strand, within CCNA_02762 at 2924.597 kb on - strand, within CCNA_02762 at 2924.602 kb on - strand, within CCNA_02762 at 2924.609 kb on - strand, within CCNA_02762 at 2924.643 kb on + strand, within CCNA_02762 at 2924.643 kb on + strand, within CCNA_02762 at 2924.643 kb on + strand, within CCNA_02762 at 2924.643 kb on + strand, within CCNA_02762 at 2924.651 kb on - strand, within CCNA_02762 at 2924.651 kb on - strand, within CCNA_02762 at 2924.651 kb on - strand, within CCNA_02762
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,923,108 + +0.5 2,923,116 - -1.0 2,923,242 + CCNA_02760 0.17 -0.9 2,923,250 - CCNA_02760 0.20 -0.4 2,923,260 - CCNA_02760 0.24 -0.3 2,923,297 + CCNA_02760 0.38 +0.9 2,923,352 + CCNA_02760 0.58 -0.0 2,923,372 + CCNA_02760 0.66 +0.2 2,923,408 - CCNA_02760 0.79 -1.3 2,923,423 + CCNA_02760 0.85 +0.0 2,923,477 - +1.1 2,923,500 + CCNA_03976 0.17 +0.4 2,923,563 - CCNA_03976 0.45 -0.8 2,923,568 - CCNA_03976 0.48 +0.6 2,923,684 + -0.0 2,923,692 - -0.0 2,923,712 - CCNA_02761 0.16 -0.9 2,923,712 - CCNA_02761 0.16 -0.1 2,923,786 - CCNA_02761 0.46 -1.3 2,923,791 - CCNA_02761 0.48 +0.2 2,923,834 + CCNA_02761 0.65 -1.7 2,923,851 + CCNA_02761 0.72 +1.0 2,923,856 + CCNA_02761 0.74 -0.7 2,923,864 - CCNA_02761 0.78 -0.1 2,923,885 + CCNA_02761 0.86 +0.2 2,923,907 - -0.4 2,923,912 - -0.4 2,923,968 - -1.2 2,923,995 + +1.6 2,924,005 - -1.4 2,924,108 - +0.8 2,924,134 - -0.4 2,924,188 - +0.0 2,924,193 + CCNA_02762 0.10 -0.4 2,924,238 - CCNA_02762 0.17 +0.1 2,924,238 - CCNA_02762 0.17 -0.4 2,924,243 - CCNA_02762 0.18 +0.1 2,924,248 + CCNA_02762 0.19 -0.6 2,924,276 + CCNA_02762 0.23 +0.2 2,924,299 + CCNA_02762 0.26 +0.5 2,924,299 + CCNA_02762 0.26 -0.2 2,924,299 + CCNA_02762 0.26 +0.2 2,924,299 + CCNA_02762 0.26 +1.9 2,924,299 + CCNA_02762 0.26 -0.1 2,924,307 - CCNA_02762 0.27 -0.2 2,924,307 - CCNA_02762 0.27 -0.3 2,924,307 - CCNA_02762 0.27 -0.5 2,924,324 + CCNA_02762 0.30 +0.0 2,924,324 + CCNA_02762 0.30 +1.8 2,924,332 - CCNA_02762 0.31 +0.6 2,924,360 + CCNA_02762 0.35 +0.0 2,924,368 - CCNA_02762 0.37 +0.3 2,924,368 - CCNA_02762 0.37 +0.2 2,924,380 - CCNA_02762 0.38 +0.2 2,924,393 + CCNA_02762 0.40 -0.1 2,924,423 + CCNA_02762 0.45 -0.1 2,924,429 - CCNA_02762 0.46 -0.7 2,924,431 - CCNA_02762 0.46 +0.5 2,924,441 - CCNA_02762 0.48 +0.8 2,924,533 + CCNA_02762 0.61 -0.1 2,924,540 - CCNA_02762 0.62 +0.1 2,924,547 + CCNA_02762 0.64 -0.2 2,924,547 + CCNA_02762 0.64 -2.0 2,924,547 + CCNA_02762 0.64 -0.7 2,924,547 + CCNA_02762 0.64 +0.4 2,924,547 + CCNA_02762 0.64 +0.1 2,924,555 - CCNA_02762 0.65 -1.2 2,924,555 - CCNA_02762 0.65 +0.2 2,924,555 - CCNA_02762 0.65 +0.5 2,924,555 - CCNA_02762 0.65 +0.3 2,924,555 - CCNA_02762 0.65 -1.0 2,924,573 + CCNA_02762 0.67 +0.0 2,924,581 - CCNA_02762 0.69 -0.1 2,924,594 + CCNA_02762 0.71 +0.2 2,924,597 - CCNA_02762 0.71 +0.2 2,924,602 - CCNA_02762 0.72 -0.2 2,924,609 - CCNA_02762 0.73 -0.2 2,924,643 + CCNA_02762 0.78 -0.5 2,924,643 + CCNA_02762 0.78 +0.8 2,924,643 + CCNA_02762 0.78 -0.8 2,924,643 + CCNA_02762 0.78 -0.3 2,924,651 - CCNA_02762 0.79 -0.8 2,924,651 - CCNA_02762 0.79 +0.3 2,924,651 - CCNA_02762 0.79 -0.2
Or see this region's nucleotide sequence