Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00766 and CCNA_00767 are separated by 37 nucleotides CCNA_00767 and CCNA_03936 are separated by 284 nucleotides CCNA_03936 and CCNA_00768 overlap by 65 nucleotides CCNA_00768 and CCNA_00769 overlap by 4 nucleotides CCNA_00769 and CCNA_00770 are separated by 83 nucleotides
CCNA_00766: CCNA_00766 - cobalamin adenosyltransferase family protein, at 823,602 to 824,180
_00766
CCNA_00767: CCNA_00767 - hypothetical protein, at 824,218 to 824,421
_00767
CCNA_03936: CCNA_03936 - hypothetical protein, at 824,706 to 824,840
_03936
CCNA_00768: CCNA_00768 - hypothetical protein, at 824,776 to 825,000
_00768
CCNA_00769: CCNA_00769 - TetR family transcriptional regulator, at 824,997 to 825,644
_00769
CCNA_00770: CCNA_00770 - TetR family transcriptional regulator, at 825,728 to 826,336
_00770
Position (kb)
824
825 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 823.765 kb on + strand, within CCNA_00766 at 823.778 kb on - strand, within CCNA_00766 at 823.780 kb on + strand, within CCNA_00766 at 823.791 kb on + strand, within CCNA_00766 at 823.826 kb on + strand, within CCNA_00766 at 823.836 kb on + strand, within CCNA_00766 at 823.836 kb on + strand, within CCNA_00766 at 823.896 kb on + strand, within CCNA_00766 at 823.904 kb on - strand, within CCNA_00766 at 823.929 kb on - strand, within CCNA_00766 at 823.929 kb on - strand, within CCNA_00766 at 823.935 kb on - strand, within CCNA_00766 at 823.945 kb on + strand, within CCNA_00766 at 823.945 kb on + strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.958 kb on - strand, within CCNA_00766 at 823.958 kb on - strand, within CCNA_00766 at 823.958 kb on - strand, within CCNA_00766 at 823.958 kb on - strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.975 kb on - strand, within CCNA_00766 at 823.975 kb on - strand, within CCNA_00766 at 823.981 kb on + strand, within CCNA_00766 at 823.989 kb on - strand, within CCNA_00766 at 824.028 kb on + strand, within CCNA_00766 at 824.028 kb on + strand, within CCNA_00766 at 824.030 kb on + strand, within CCNA_00766 at 824.098 kb on + strand, within CCNA_00766 at 824.103 kb on + strand, within CCNA_00766 at 824.106 kb on - strand, within CCNA_00766 at 824.111 kb on - strand, within CCNA_00766 at 824.215 kb on + strand at 824.229 kb on + strand at 824.237 kb on - strand at 824.244 kb on - strand, within CCNA_00767 at 824.254 kb on - strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.318 kb on - strand, within CCNA_00767 at 824.343 kb on + strand, within CCNA_00767 at 824.353 kb on - strand, within CCNA_00767 at 824.385 kb on - strand, within CCNA_00767 at 824.402 kb on + strand at 824.412 kb on + strand at 824.412 kb on + strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.424 kb on + strand at 824.432 kb on - strand at 824.441 kb on + strand at 824.461 kb on - strand at 824.599 kb on - strand at 824.808 kb on + strand at 824.808 kb on + strand at 824.808 kb on + strand at 824.816 kb on - strand at 824.863 kb on - strand, within CCNA_00768 at 824.888 kb on - strand, within CCNA_00768 at 824.909 kb on - strand, within CCNA_00768 at 824.925 kb on - strand, within CCNA_00768 at 824.940 kb on - strand, within CCNA_00768 at 825.019 kb on - strand at 825.065 kb on + strand, within CCNA_00769 at 825.074 kb on + strand, within CCNA_00769 at 825.127 kb on + strand, within CCNA_00769 at 825.127 kb on + strand, within CCNA_00769 at 825.135 kb on - strand, within CCNA_00769 at 825.169 kb on - strand, within CCNA_00769 at 825.218 kb on + strand, within CCNA_00769 at 825.253 kb on + strand, within CCNA_00769 at 825.314 kb on - strand, within CCNA_00769 at 825.327 kb on + strand, within CCNA_00769 at 825.327 kb on + strand, within CCNA_00769 at 825.381 kb on + strand, within CCNA_00769 at 825.436 kb on + strand, within CCNA_00769 at 825.444 kb on - strand, within CCNA_00769 at 825.454 kb on - strand, within CCNA_00769 at 825.456 kb on + strand, within CCNA_00769 at 825.456 kb on + strand, within CCNA_00769 at 825.459 kb on - strand, within CCNA_00769 at 825.464 kb on - strand, within CCNA_00769 at 825.485 kb on + strand, within CCNA_00769 at 825.561 kb on + strand, within CCNA_00769 at 825.569 kb on - strand, within CCNA_00769 at 825.574 kb on + strand, within CCNA_00769 at 825.647 kb on + strand at 825.681 kb on + strand at 825.710 kb on + strand at 825.718 kb on - strand at 825.738 kb on - strand at 825.739 kb on - strand at 825.783 kb on + strand at 825.791 kb on - strand, within CCNA_00770 at 825.807 kb on + strand, within CCNA_00770 at 825.815 kb on - strand, within CCNA_00770 at 825.826 kb on - strand, within CCNA_00770 at 825.830 kb on - strand, within CCNA_00770 at 825.834 kb on + strand, within CCNA_00770
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 823,765 + CCNA_00766 0.28 -0.5 823,778 - CCNA_00766 0.30 -0.6 823,780 + CCNA_00766 0.31 -0.3 823,791 + CCNA_00766 0.33 +1.1 823,826 + CCNA_00766 0.39 -1.0 823,836 + CCNA_00766 0.40 -0.1 823,836 + CCNA_00766 0.40 -0.8 823,896 + CCNA_00766 0.51 -1.4 823,904 - CCNA_00766 0.52 -0.8 823,929 - CCNA_00766 0.56 -0.7 823,929 - CCNA_00766 0.56 -0.6 823,935 - CCNA_00766 0.58 -0.3 823,945 + CCNA_00766 0.59 -1.6 823,945 + CCNA_00766 0.59 -0.8 823,948 - CCNA_00766 0.60 -0.9 823,958 - CCNA_00766 0.61 -0.5 823,958 - CCNA_00766 0.61 -0.5 823,958 - CCNA_00766 0.61 -0.8 823,958 - CCNA_00766 0.61 +0.2 823,967 + CCNA_00766 0.63 -0.9 823,967 + CCNA_00766 0.63 -0.8 823,975 - CCNA_00766 0.64 +1.0 823,975 - CCNA_00766 0.64 -1.7 823,981 + CCNA_00766 0.65 -0.3 823,989 - CCNA_00766 0.67 -0.3 824,028 + CCNA_00766 0.74 +0.4 824,028 + CCNA_00766 0.74 -2.1 824,030 + CCNA_00766 0.74 -0.5 824,098 + CCNA_00766 0.86 -0.9 824,103 + CCNA_00766 0.87 -0.4 824,106 - CCNA_00766 0.87 -0.9 824,111 - CCNA_00766 0.88 -0.8 824,215 + -0.6 824,229 + +0.2 824,237 - -0.0 824,244 - CCNA_00767 0.13 +0.4 824,254 - CCNA_00767 0.18 +0.7 824,309 + CCNA_00767 0.45 +0.3 824,309 + CCNA_00767 0.45 +0.1 824,317 - CCNA_00767 0.49 +0.6 824,317 - CCNA_00767 0.49 +0.2 824,318 - CCNA_00767 0.49 -0.4 824,343 + CCNA_00767 0.61 +0.4 824,353 - CCNA_00767 0.66 -0.7 824,385 - CCNA_00767 0.82 +0.7 824,402 + -0.5 824,412 + +0.8 824,412 + -1.6 824,420 - +0.6 824,420 - +0.2 824,420 - -1.8 824,420 - -0.1 824,420 - +0.5 824,420 - -1.0 824,420 - +1.6 824,420 - -0.1 824,420 - +0.1 824,420 - +0.5 824,420 - -0.2 824,420 - -0.3 824,420 - -1.0 824,424 + +0.7 824,432 - +0.1 824,441 + -0.6 824,461 - -0.3 824,599 - -0.2 824,808 + +0.5 824,808 + -0.8 824,808 + +0.0 824,816 - -1.7 824,863 - CCNA_00768 0.39 -0.3 824,888 - CCNA_00768 0.50 +1.0 824,909 - CCNA_00768 0.59 +0.6 824,925 - CCNA_00768 0.66 +0.8 824,940 - CCNA_00768 0.73 -1.4 825,019 - +0.8 825,065 + CCNA_00769 0.10 +0.8 825,074 + CCNA_00769 0.12 +0.2 825,127 + CCNA_00769 0.20 +0.7 825,127 + CCNA_00769 0.20 -0.2 825,135 - CCNA_00769 0.21 +0.1 825,169 - CCNA_00769 0.27 -0.0 825,218 + CCNA_00769 0.34 +0.1 825,253 + CCNA_00769 0.40 -0.0 825,314 - CCNA_00769 0.49 -1.1 825,327 + CCNA_00769 0.51 +0.3 825,327 + CCNA_00769 0.51 +0.2 825,381 + CCNA_00769 0.59 -0.3 825,436 + CCNA_00769 0.68 -0.1 825,444 - CCNA_00769 0.69 -0.4 825,454 - CCNA_00769 0.71 -0.2 825,456 + CCNA_00769 0.71 +1.0 825,456 + CCNA_00769 0.71 -0.8 825,459 - CCNA_00769 0.71 +0.6 825,464 - CCNA_00769 0.72 -0.2 825,485 + CCNA_00769 0.75 +0.2 825,561 + CCNA_00769 0.87 +0.4 825,569 - CCNA_00769 0.88 +0.0 825,574 + CCNA_00769 0.89 -0.1 825,647 + -0.2 825,681 + +0.5 825,710 + +0.5 825,718 - +0.5 825,738 - -0.7 825,739 - -0.7 825,783 + +0.3 825,791 - CCNA_00770 0.10 -0.9 825,807 + CCNA_00770 0.13 +0.1 825,815 - CCNA_00770 0.14 +1.1 825,826 - CCNA_00770 0.16 -0.9 825,830 - CCNA_00770 0.17 -0.2 825,834 + CCNA_00770 0.17 +2.0
Or see this region's nucleotide sequence