Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03793 and CCNA_03794 are separated by 91 nucleotides CCNA_03794 and CCNA_03795 are separated by 226 nucleotides CCNA_03795 and CCNA_03796 are separated by 288 nucleotides
CCNA_03793: CCNA_03793 - cell division protein FtsY, at 3,956,890 to 3,957,831
_03793
CCNA_03794: CCNA_03794 - hypothetical protein, at 3,957,923 to 3,958,573
_03794
CCNA_03795: CCNA_03795 - tellurium resistance protein terB, at 3,958,800 to 3,959,258
_03795
CCNA_03796: CCNA_03796 - tellurium resistance protein terC, at 3,959,547 to 3,960,557
_03796
Position (kb)
3957
3958
3959 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3957.840 kb on + strand at 3957.868 kb on - strand at 3957.879 kb on + strand at 3957.886 kb on + strand at 3957.894 kb on - strand at 3957.894 kb on - strand at 3957.894 kb on - strand at 3957.920 kb on + strand at 3957.929 kb on - strand at 3957.941 kb on - strand at 3957.942 kb on - strand at 3957.953 kb on + strand at 3957.988 kb on + strand, within CCNA_03794 at 3958.021 kb on + strand, within CCNA_03794 at 3958.067 kb on + strand, within CCNA_03794 at 3958.114 kb on + strand, within CCNA_03794 at 3958.139 kb on + strand, within CCNA_03794 at 3958.147 kb on - strand, within CCNA_03794 at 3958.147 kb on - strand, within CCNA_03794 at 3958.206 kb on - strand, within CCNA_03794 at 3958.210 kb on + strand, within CCNA_03794 at 3958.210 kb on + strand, within CCNA_03794 at 3958.210 kb on + strand, within CCNA_03794 at 3958.215 kb on + strand, within CCNA_03794 at 3958.218 kb on - strand, within CCNA_03794 at 3958.218 kb on - strand, within CCNA_03794 at 3958.218 kb on - strand, within CCNA_03794 at 3958.296 kb on - strand, within CCNA_03794 at 3958.305 kb on - strand, within CCNA_03794 at 3958.366 kb on - strand, within CCNA_03794 at 3958.435 kb on - strand, within CCNA_03794 at 3958.443 kb on - strand, within CCNA_03794 at 3958.443 kb on - strand, within CCNA_03794 at 3958.463 kb on - strand, within CCNA_03794 at 3958.485 kb on + strand, within CCNA_03794 at 3958.493 kb on - strand, within CCNA_03794 at 3958.518 kb on + strand at 3958.526 kb on + strand at 3958.534 kb on - strand at 3958.551 kb on - strand at 3958.558 kb on - strand at 3958.590 kb on - strand at 3958.600 kb on + strand at 3958.600 kb on + strand at 3958.601 kb on + strand at 3958.608 kb on + strand at 3958.609 kb on - strand at 3958.609 kb on - strand at 3958.631 kb on + strand at 3958.666 kb on - strand at 3958.743 kb on + strand at 3958.751 kb on - strand at 3958.751 kb on - strand at 3958.751 kb on - strand at 3958.759 kb on + strand at 3958.772 kb on - strand at 3958.782 kb on + strand at 3958.782 kb on + strand at 3958.784 kb on + strand at 3958.790 kb on - strand at 3958.792 kb on + strand at 3958.792 kb on + strand at 3958.800 kb on - strand at 3958.800 kb on - strand at 3958.827 kb on + strand at 3958.861 kb on + strand, within CCNA_03795 at 3958.871 kb on + strand, within CCNA_03795 at 3958.879 kb on - strand, within CCNA_03795 at 3958.927 kb on + strand, within CCNA_03795 at 3958.935 kb on - strand, within CCNA_03795 at 3958.956 kb on + strand, within CCNA_03795 at 3958.974 kb on - strand, within CCNA_03795 at 3959.010 kb on - strand, within CCNA_03795 at 3959.010 kb on - strand, within CCNA_03795 at 3959.051 kb on - strand, within CCNA_03795 at 3959.120 kb on + strand, within CCNA_03795 at 3959.213 kb on - strand at 3959.215 kb on + strand at 3959.218 kb on - strand at 3959.225 kb on + strand at 3959.233 kb on - strand at 3959.233 kb on - strand at 3959.268 kb on + strand at 3959.347 kb on - strand at 3959.347 kb on - strand at 3959.383 kb on + strand at 3959.396 kb on - strand at 3959.404 kb on + strand at 3959.443 kb on + strand at 3959.451 kb on - strand at 3959.456 kb on - strand at 3959.481 kb on + strand at 3959.481 kb on + strand at 3959.489 kb on - strand at 3959.490 kb on - strand at 3959.502 kb on + strand at 3959.502 kb on + strand at 3959.527 kb on + strand at 3959.565 kb on + strand at 3959.573 kb on - strand at 3959.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,957,840 + -1.2 3,957,868 - +0.1 3,957,879 + +0.7 3,957,886 + -1.0 3,957,894 - +0.2 3,957,894 - -0.2 3,957,894 - -1.1 3,957,920 + +0.3 3,957,929 - -0.5 3,957,941 - +0.3 3,957,942 - +0.8 3,957,953 + -0.7 3,957,988 + CCNA_03794 0.10 -2.0 3,958,021 + CCNA_03794 0.15 -0.8 3,958,067 + CCNA_03794 0.22 +0.0 3,958,114 + CCNA_03794 0.29 -3.1 3,958,139 + CCNA_03794 0.33 +0.3 3,958,147 - CCNA_03794 0.34 -0.3 3,958,147 - CCNA_03794 0.34 -0.8 3,958,206 - CCNA_03794 0.43 -0.1 3,958,210 + CCNA_03794 0.44 -1.1 3,958,210 + CCNA_03794 0.44 -1.3 3,958,210 + CCNA_03794 0.44 -0.4 3,958,215 + CCNA_03794 0.45 +0.6 3,958,218 - CCNA_03794 0.45 -0.6 3,958,218 - CCNA_03794 0.45 -2.1 3,958,218 - CCNA_03794 0.45 -0.9 3,958,296 - CCNA_03794 0.57 +1.7 3,958,305 - CCNA_03794 0.59 -1.5 3,958,366 - CCNA_03794 0.68 +0.7 3,958,435 - CCNA_03794 0.79 -1.8 3,958,443 - CCNA_03794 0.80 -0.9 3,958,443 - CCNA_03794 0.80 -1.8 3,958,463 - CCNA_03794 0.83 -1.3 3,958,485 + CCNA_03794 0.86 -1.8 3,958,493 - CCNA_03794 0.88 +0.2 3,958,518 + -1.4 3,958,526 + -0.2 3,958,534 - -1.5 3,958,551 - -0.8 3,958,558 - -1.3 3,958,590 - +0.8 3,958,600 + -0.2 3,958,600 + -0.8 3,958,601 + +1.0 3,958,608 + -0.3 3,958,609 - -0.2 3,958,609 - +0.2 3,958,631 + -0.3 3,958,666 - -0.1 3,958,743 + -0.7 3,958,751 - +0.4 3,958,751 - +0.1 3,958,751 - -0.0 3,958,759 + +0.1 3,958,772 - +0.3 3,958,782 + +0.4 3,958,782 + -0.1 3,958,784 + -0.1 3,958,790 - -0.3 3,958,792 + -1.8 3,958,792 + +0.6 3,958,800 - +1.7 3,958,800 - -0.3 3,958,827 + +1.0 3,958,861 + CCNA_03795 0.13 -0.3 3,958,871 + CCNA_03795 0.15 -0.1 3,958,879 - CCNA_03795 0.17 +0.0 3,958,927 + CCNA_03795 0.28 +0.2 3,958,935 - CCNA_03795 0.29 -0.2 3,958,956 + CCNA_03795 0.34 +0.1 3,958,974 - CCNA_03795 0.38 -1.5 3,959,010 - CCNA_03795 0.46 -0.8 3,959,010 - CCNA_03795 0.46 -1.4 3,959,051 - CCNA_03795 0.55 -0.5 3,959,120 + CCNA_03795 0.70 +0.4 3,959,213 - -0.1 3,959,215 + -0.2 3,959,218 - -0.4 3,959,225 + -0.3 3,959,233 - -0.9 3,959,233 - -0.6 3,959,268 + +0.4 3,959,347 - -0.1 3,959,347 - +0.4 3,959,383 + +0.3 3,959,396 - +0.3 3,959,404 + -0.1 3,959,443 + -1.6 3,959,451 - +0.4 3,959,456 - +0.2 3,959,481 + -0.7 3,959,481 + -0.4 3,959,489 - +0.3 3,959,490 - -0.8 3,959,502 + +0.3 3,959,502 + -0.1 3,959,527 + -0.6 3,959,565 + +0.6 3,959,573 - -0.5 3,959,573 - -1.6
Or see this region's nucleotide sequence