Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03705 and CCNA_R0089 are separated by 215 nucleotides CCNA_R0089 and CCNA_03706 are separated by 169 nucleotides CCNA_03706 and CCNA_03707 are separated by 85 nucleotides CCNA_03707 and CCNA_03708 are separated by 13 nucleotides CCNA_03708 and CCNA_03709 are separated by 14 nucleotides
CCNA_03705: CCNA_03705 - hypothetical protein, at 3,873,755 to 3,874,225
_03705
CCNA_R0089: CCNA_R0089 - tRNA-Ala, at 3,874,441 to 3,874,516
_R0089
CCNA_03706: CCNA_03706 - small heat shock protein, at 3,874,686 to 3,875,114
_03706
CCNA_03707: CCNA_03707 - hypothetical protein, at 3,875,200 to 3,875,469
_03707
CCNA_03708: CCNA_03708 - transposase, at 3,875,483 to 3,875,851
_03708
CCNA_03709: CCNA_03709 - transposase, at 3,875,866 to 3,876,276
_03709
Position (kb)
3874
3875
3876 Strain fitness (log2 ratio)
-2
-1
0
1 at 3873.787 kb on - strand at 3873.851 kb on + strand, within CCNA_03705 at 3873.883 kb on - strand, within CCNA_03705 at 3873.951 kb on + strand, within CCNA_03705 at 3874.109 kb on + strand, within CCNA_03705 at 3874.117 kb on - strand, within CCNA_03705 at 3874.273 kb on - strand at 3874.584 kb on - strand at 3874.584 kb on - strand at 3874.613 kb on - strand at 3874.615 kb on + strand at 3874.623 kb on - strand at 3874.623 kb on - strand at 3874.736 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.746 kb on - strand, within CCNA_03706 at 3874.746 kb on - strand, within CCNA_03706 at 3874.805 kb on + strand, within CCNA_03706 at 3874.830 kb on + strand, within CCNA_03706 at 3874.838 kb on - strand, within CCNA_03706 at 3874.838 kb on - strand, within CCNA_03706 at 3874.936 kb on - strand, within CCNA_03706 at 3874.975 kb on + strand, within CCNA_03706 at 3874.995 kb on - strand, within CCNA_03706 at 3875.011 kb on - strand, within CCNA_03706 at 3875.020 kb on - strand, within CCNA_03706 at 3875.020 kb on - strand, within CCNA_03706 at 3875.026 kb on + strand, within CCNA_03706 at 3875.060 kb on - strand, within CCNA_03706 at 3875.060 kb on - strand, within CCNA_03706 at 3875.111 kb on + strand at 3875.119 kb on - strand at 3875.119 kb on - strand at 3875.140 kb on - strand at 3875.190 kb on - strand at 3875.190 kb on - strand at 3875.212 kb on + strand at 3875.227 kb on + strand, within CCNA_03707 at 3875.227 kb on + strand, within CCNA_03707 at 3875.227 kb on + strand, within CCNA_03707 at 3875.227 kb on + strand, within CCNA_03707 at 3875.235 kb on - strand, within CCNA_03707 at 3875.284 kb on - strand, within CCNA_03707 at 3875.286 kb on + strand, within CCNA_03707 at 3875.294 kb on - strand, within CCNA_03707 at 3875.333 kb on + strand, within CCNA_03707 at 3875.455 kb on + strand at 3875.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,873,787 - -0.3 3,873,851 + CCNA_03705 0.20 +1.2 3,873,883 - CCNA_03705 0.27 -0.0 3,873,951 + CCNA_03705 0.42 -1.8 3,874,109 + CCNA_03705 0.75 +0.6 3,874,117 - CCNA_03705 0.77 +0.3 3,874,273 - +0.4 3,874,584 - +0.3 3,874,584 - +0.1 3,874,613 - +1.1 3,874,615 + +0.2 3,874,623 - -0.8 3,874,623 - +0.1 3,874,736 + CCNA_03706 0.12 -0.3 3,874,738 + CCNA_03706 0.12 -0.1 3,874,738 + CCNA_03706 0.12 -0.2 3,874,738 + CCNA_03706 0.12 -0.4 3,874,738 + CCNA_03706 0.12 +0.1 3,874,738 + CCNA_03706 0.12 +0.2 3,874,746 - CCNA_03706 0.14 +0.4 3,874,746 - CCNA_03706 0.14 +0.4 3,874,805 + CCNA_03706 0.28 -0.1 3,874,830 + CCNA_03706 0.34 -0.5 3,874,838 - CCNA_03706 0.35 -1.4 3,874,838 - CCNA_03706 0.35 -0.6 3,874,936 - CCNA_03706 0.58 -0.5 3,874,975 + CCNA_03706 0.67 -0.2 3,874,995 - CCNA_03706 0.72 +0.2 3,875,011 - CCNA_03706 0.76 -0.7 3,875,020 - CCNA_03706 0.78 +0.0 3,875,020 - CCNA_03706 0.78 +0.1 3,875,026 + CCNA_03706 0.79 +0.3 3,875,060 - CCNA_03706 0.87 +0.8 3,875,060 - CCNA_03706 0.87 -0.3 3,875,111 + +0.4 3,875,119 - -0.4 3,875,119 - +0.2 3,875,140 - -0.7 3,875,190 - -0.0 3,875,190 - -0.2 3,875,212 + +0.4 3,875,227 + CCNA_03707 0.10 +0.2 3,875,227 + CCNA_03707 0.10 +0.1 3,875,227 + CCNA_03707 0.10 -0.0 3,875,227 + CCNA_03707 0.10 -0.0 3,875,235 - CCNA_03707 0.13 -0.3 3,875,284 - CCNA_03707 0.31 -0.5 3,875,286 + CCNA_03707 0.32 +0.5 3,875,294 - CCNA_03707 0.35 -0.1 3,875,333 + CCNA_03707 0.49 -0.4 3,875,455 + +0.3 3,875,505 - -0.2
Or see this region's nucleotide sequence