Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03691 and CCNA_03692 overlap by 8 nucleotides CCNA_03692 and CCNA_03693 are separated by 163 nucleotides
CCNA_03691: CCNA_03691 - bifunctional regulator KidO, at 3,856,964 to 3,857,842
_03691
CCNA_03692: CCNA_03692 - xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 3,857,835 to 3,858,917
_03692
CCNA_03693: CCNA_03693 - creatinine amidohydrolase family protein, at 3,859,081 to 3,859,836
_03693
Position (kb)
3857
3858
3859 Strain fitness (log2 ratio)
-2
-1
0
1 at 3856.870 kb on + strand at 3856.882 kb on + strand at 3856.902 kb on + strand at 3856.902 kb on + strand at 3856.918 kb on + strand at 3856.923 kb on + strand at 3856.923 kb on + strand at 3856.936 kb on - strand at 3856.971 kb on + strand at 3857.028 kb on + strand at 3857.110 kb on + strand, within CCNA_03691 at 3857.120 kb on + strand, within CCNA_03691 at 3857.125 kb on + strand, within CCNA_03691 at 3857.132 kb on + strand, within CCNA_03691 at 3857.132 kb on + strand, within CCNA_03691 at 3857.133 kb on - strand, within CCNA_03691 at 3857.140 kb on - strand, within CCNA_03691 at 3857.152 kb on + strand, within CCNA_03691 at 3857.208 kb on + strand, within CCNA_03691 at 3857.208 kb on + strand, within CCNA_03691 at 3857.208 kb on + strand, within CCNA_03691 at 3857.208 kb on + strand, within CCNA_03691 at 3857.208 kb on + strand, within CCNA_03691 at 3857.208 kb on + strand, within CCNA_03691 at 3857.208 kb on + strand, within CCNA_03691 at 3857.216 kb on - strand, within CCNA_03691 at 3857.216 kb on - strand, within CCNA_03691 at 3857.216 kb on - strand, within CCNA_03691 at 3857.275 kb on + strand, within CCNA_03691 at 3857.281 kb on - strand, within CCNA_03691 at 3857.306 kb on - strand, within CCNA_03691 at 3857.357 kb on + strand, within CCNA_03691 at 3857.378 kb on + strand, within CCNA_03691 at 3857.386 kb on - strand, within CCNA_03691 at 3857.408 kb on + strand, within CCNA_03691 at 3857.429 kb on - strand, within CCNA_03691 at 3857.575 kb on - strand, within CCNA_03691 at 3857.664 kb on + strand, within CCNA_03691 at 3857.683 kb on + strand, within CCNA_03691 at 3857.683 kb on + strand, within CCNA_03691 at 3857.683 kb on - strand, within CCNA_03691 at 3857.693 kb on + strand, within CCNA_03691 at 3857.693 kb on + strand, within CCNA_03691 at 3857.693 kb on + strand, within CCNA_03691 at 3857.726 kb on + strand, within CCNA_03691 at 3857.726 kb on + strand, within CCNA_03691 at 3857.726 kb on + strand, within CCNA_03691 at 3857.741 kb on + strand, within CCNA_03691 at 3857.879 kb on - strand at 3857.892 kb on + strand at 3857.892 kb on + strand at 3857.927 kb on + strand at 3857.940 kb on + strand at 3857.940 kb on + strand at 3857.984 kb on - strand, within CCNA_03692 at 3857.984 kb on - strand, within CCNA_03692 at 3858.006 kb on + strand, within CCNA_03692 at 3858.006 kb on + strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.014 kb on - strand, within CCNA_03692 at 3858.015 kb on - strand, within CCNA_03692 at 3858.031 kb on + strand, within CCNA_03692 at 3858.034 kb on + strand, within CCNA_03692 at 3858.162 kb on + strand, within CCNA_03692 at 3858.214 kb on - strand, within CCNA_03692 at 3858.214 kb on - strand, within CCNA_03692 at 3858.221 kb on - strand, within CCNA_03692 at 3858.245 kb on + strand, within CCNA_03692 at 3858.248 kb on + strand, within CCNA_03692 at 3858.294 kb on - strand, within CCNA_03692 at 3858.355 kb on + strand, within CCNA_03692 at 3858.404 kb on - strand, within CCNA_03692 at 3858.427 kb on + strand, within CCNA_03692 at 3858.435 kb on - strand, within CCNA_03692 at 3858.449 kb on + strand, within CCNA_03692 at 3858.462 kb on - strand, within CCNA_03692 at 3858.469 kb on - strand, within CCNA_03692 at 3858.473 kb on + strand, within CCNA_03692 at 3858.504 kb on + strand, within CCNA_03692 at 3858.524 kb on + strand, within CCNA_03692 at 3858.564 kb on + strand, within CCNA_03692 at 3858.592 kb on - strand, within CCNA_03692 at 3858.614 kb on - strand, within CCNA_03692 at 3858.615 kb on - strand, within CCNA_03692 at 3858.617 kb on - strand, within CCNA_03692 at 3858.648 kb on - strand, within CCNA_03692 at 3858.654 kb on - strand, within CCNA_03692 at 3858.656 kb on + strand, within CCNA_03692 at 3858.664 kb on - strand, within CCNA_03692 at 3858.664 kb on - strand, within CCNA_03692 at 3858.666 kb on + strand, within CCNA_03692 at 3858.671 kb on + strand, within CCNA_03692 at 3858.674 kb on - strand, within CCNA_03692 at 3858.674 kb on - strand, within CCNA_03692 at 3858.674 kb on - strand, within CCNA_03692 at 3858.681 kb on - strand, within CCNA_03692 at 3858.683 kb on + strand, within CCNA_03692 at 3858.708 kb on - strand, within CCNA_03692 at 3858.710 kb on + strand, within CCNA_03692 at 3858.749 kb on + strand, within CCNA_03692 at 3858.749 kb on + strand, within CCNA_03692 at 3858.757 kb on - strand, within CCNA_03692 at 3858.757 kb on - strand, within CCNA_03692 at 3858.805 kb on + strand, within CCNA_03692 at 3858.805 kb on + strand, within CCNA_03692 at 3858.805 kb on + strand, within CCNA_03692 at 3858.805 kb on + strand, within CCNA_03692 at 3858.813 kb on - strand at 3858.813 kb on - strand at 3858.813 kb on - strand at 3858.813 kb on - strand at 3858.813 kb on - strand at 3858.813 kb on - strand at 3858.813 kb on - strand at 3858.828 kb on - strand at 3858.868 kb on - strand at 3858.911 kb on + strand at 3858.956 kb on + strand at 3858.990 kb on + strand at 3859.021 kb on + strand at 3859.023 kb on - strand at 3859.023 kb on - strand at 3859.023 kb on - strand at 3859.034 kb on - strand at 3859.036 kb on - strand at 3859.036 kb on - strand at 3859.041 kb on - strand at 3859.086 kb on - strand at 3859.150 kb on - strand at 3859.159 kb on + strand, within CCNA_03693 at 3859.164 kb on + strand, within CCNA_03693 at 3859.169 kb on + strand, within CCNA_03693 at 3859.172 kb on - strand, within CCNA_03693 at 3859.185 kb on + strand, within CCNA_03693 at 3859.186 kb on + strand, within CCNA_03693 at 3859.288 kb on - strand, within CCNA_03693 at 3859.308 kb on - strand, within CCNA_03693 at 3859.310 kb on - strand, within CCNA_03693 at 3859.372 kb on - strand, within CCNA_03693 at 3859.384 kb on - strand, within CCNA_03693 at 3859.395 kb on - strand, within CCNA_03693 at 3859.450 kb on - strand, within CCNA_03693 at 3859.462 kb on - strand, within CCNA_03693 at 3859.462 kb on - strand, within CCNA_03693 at 3859.462 kb on - strand, within CCNA_03693 at 3859.462 kb on - strand, within CCNA_03693 at 3859.462 kb on - strand, within CCNA_03693 at 3859.462 kb on - strand, within CCNA_03693 at 3859.503 kb on - strand, within CCNA_03693 at 3859.514 kb on + strand, within CCNA_03693 at 3859.524 kb on + strand, within CCNA_03693 at 3859.532 kb on - strand, within CCNA_03693 at 3859.539 kb on - strand, within CCNA_03693 at 3859.581 kb on - strand, within CCNA_03693 at 3859.586 kb on - strand, within CCNA_03693 at 3859.629 kb on - strand, within CCNA_03693 at 3859.645 kb on + strand, within CCNA_03693 at 3859.655 kb on + strand, within CCNA_03693 at 3859.659 kb on + strand, within CCNA_03693 at 3859.662 kb on - strand, within CCNA_03693 at 3859.713 kb on + strand, within CCNA_03693 at 3859.713 kb on + strand, within CCNA_03693 at 3859.721 kb on + strand, within CCNA_03693 at 3859.721 kb on + strand, within CCNA_03693 at 3859.721 kb on + strand, within CCNA_03693 at 3859.729 kb on - strand, within CCNA_03693 at 3859.762 kb on + strand at 3859.771 kb on - strand at 3859.816 kb on + strand at 3859.825 kb on + strand at 3859.833 kb on - strand at 3859.866 kb on - strand at 3859.866 kb on - strand at 3859.872 kb on + strand at 3859.873 kb on - strand at 3859.880 kb on - strand at 3859.880 kb on - strand at 3859.880 kb on - strand at 3859.880 kb on - strand at 3859.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,856,870 + +0.5 3,856,882 + +0.4 3,856,902 + +0.3 3,856,902 + -0.1 3,856,918 + -0.0 3,856,923 + -0.4 3,856,923 + +0.0 3,856,936 - -0.0 3,856,971 + -0.6 3,857,028 + +0.1 3,857,110 + CCNA_03691 0.17 -0.9 3,857,120 + CCNA_03691 0.18 -0.3 3,857,125 + CCNA_03691 0.18 +0.6 3,857,132 + CCNA_03691 0.19 -0.3 3,857,132 + CCNA_03691 0.19 -0.5 3,857,133 - CCNA_03691 0.19 -0.5 3,857,140 - CCNA_03691 0.20 -0.3 3,857,152 + CCNA_03691 0.21 -0.6 3,857,208 + CCNA_03691 0.28 -0.2 3,857,208 + CCNA_03691 0.28 -0.9 3,857,208 + CCNA_03691 0.28 +1.4 3,857,208 + CCNA_03691 0.28 -0.4 3,857,208 + CCNA_03691 0.28 +1.3 3,857,208 + CCNA_03691 0.28 +1.5 3,857,208 + CCNA_03691 0.28 -0.4 3,857,216 - CCNA_03691 0.29 -0.3 3,857,216 - CCNA_03691 0.29 -0.1 3,857,216 - CCNA_03691 0.29 -0.1 3,857,275 + CCNA_03691 0.35 -0.1 3,857,281 - CCNA_03691 0.36 -0.3 3,857,306 - CCNA_03691 0.39 +0.2 3,857,357 + CCNA_03691 0.45 +1.4 3,857,378 + CCNA_03691 0.47 +0.5 3,857,386 - CCNA_03691 0.48 +0.7 3,857,408 + CCNA_03691 0.51 +0.4 3,857,429 - CCNA_03691 0.53 -0.0 3,857,575 - CCNA_03691 0.70 -0.5 3,857,664 + CCNA_03691 0.80 +0.3 3,857,683 + CCNA_03691 0.82 -1.6 3,857,683 + CCNA_03691 0.82 -1.6 3,857,683 - CCNA_03691 0.82 -0.2 3,857,693 + CCNA_03691 0.83 -1.0 3,857,693 + CCNA_03691 0.83 -0.6 3,857,693 + CCNA_03691 0.83 -0.2 3,857,726 + CCNA_03691 0.87 -0.6 3,857,726 + CCNA_03691 0.87 +0.4 3,857,726 + CCNA_03691 0.87 +0.2 3,857,741 + CCNA_03691 0.88 -1.0 3,857,879 - +0.4 3,857,892 + -0.6 3,857,892 + -0.1 3,857,927 + -0.1 3,857,940 + -0.2 3,857,940 + +0.2 3,857,984 - CCNA_03692 0.14 +0.0 3,857,984 - CCNA_03692 0.14 -1.4 3,858,006 + CCNA_03692 0.16 -0.3 3,858,006 + CCNA_03692 0.16 -0.7 3,858,014 - CCNA_03692 0.17 -0.4 3,858,014 - CCNA_03692 0.17 -0.0 3,858,014 - CCNA_03692 0.17 -1.7 3,858,014 - CCNA_03692 0.17 +0.3 3,858,014 - CCNA_03692 0.17 -0.7 3,858,014 - CCNA_03692 0.17 -0.0 3,858,014 - CCNA_03692 0.17 -0.5 3,858,014 - CCNA_03692 0.17 -0.1 3,858,014 - CCNA_03692 0.17 +0.1 3,858,014 - CCNA_03692 0.17 -0.5 3,858,015 - CCNA_03692 0.17 -0.2 3,858,031 + CCNA_03692 0.18 -0.0 3,858,034 + CCNA_03692 0.18 -0.2 3,858,162 + CCNA_03692 0.30 +0.2 3,858,214 - CCNA_03692 0.35 +0.5 3,858,214 - CCNA_03692 0.35 -0.9 3,858,221 - CCNA_03692 0.36 -0.2 3,858,245 + CCNA_03692 0.38 -0.5 3,858,248 + CCNA_03692 0.38 +0.5 3,858,294 - CCNA_03692 0.42 -1.1 3,858,355 + CCNA_03692 0.48 -0.2 3,858,404 - CCNA_03692 0.53 -0.2 3,858,427 + CCNA_03692 0.55 +0.1 3,858,435 - CCNA_03692 0.55 -0.1 3,858,449 + CCNA_03692 0.57 -0.5 3,858,462 - CCNA_03692 0.58 +0.2 3,858,469 - CCNA_03692 0.59 +0.3 3,858,473 + CCNA_03692 0.59 +0.9 3,858,504 + CCNA_03692 0.62 -0.2 3,858,524 + CCNA_03692 0.64 +0.1 3,858,564 + CCNA_03692 0.67 -0.1 3,858,592 - CCNA_03692 0.70 -0.2 3,858,614 - CCNA_03692 0.72 -1.0 3,858,615 - CCNA_03692 0.72 -0.5 3,858,617 - CCNA_03692 0.72 +0.2 3,858,648 - CCNA_03692 0.75 -0.3 3,858,654 - CCNA_03692 0.76 +0.6 3,858,656 + CCNA_03692 0.76 +0.3 3,858,664 - CCNA_03692 0.77 +0.4 3,858,664 - CCNA_03692 0.77 +0.2 3,858,666 + CCNA_03692 0.77 -0.2 3,858,671 + CCNA_03692 0.77 +0.3 3,858,674 - CCNA_03692 0.77 -0.1 3,858,674 - CCNA_03692 0.77 -0.4 3,858,674 - CCNA_03692 0.77 +0.6 3,858,681 - CCNA_03692 0.78 -0.2 3,858,683 + CCNA_03692 0.78 +0.8 3,858,708 - CCNA_03692 0.81 -0.3 3,858,710 + CCNA_03692 0.81 +0.4 3,858,749 + CCNA_03692 0.84 -0.3 3,858,749 + CCNA_03692 0.84 +0.2 3,858,757 - CCNA_03692 0.85 -0.2 3,858,757 - CCNA_03692 0.85 +0.5 3,858,805 + CCNA_03692 0.90 -0.1 3,858,805 + CCNA_03692 0.90 +1.3 3,858,805 + CCNA_03692 0.90 +0.0 3,858,805 + CCNA_03692 0.90 +1.7 3,858,813 - -0.2 3,858,813 - +0.4 3,858,813 - -1.4 3,858,813 - +0.7 3,858,813 - +0.2 3,858,813 - +0.4 3,858,813 - +0.3 3,858,828 - +0.1 3,858,868 - +0.6 3,858,911 + +0.5 3,858,956 + +0.8 3,858,990 + +0.1 3,859,021 + -0.0 3,859,023 - +0.4 3,859,023 - +0.2 3,859,023 - +0.1 3,859,034 - -0.4 3,859,036 - -0.2 3,859,036 - +0.4 3,859,041 - -0.2 3,859,086 - +0.6 3,859,150 - -0.5 3,859,159 + CCNA_03693 0.10 +0.1 3,859,164 + CCNA_03693 0.11 +0.2 3,859,169 + CCNA_03693 0.12 +0.2 3,859,172 - CCNA_03693 0.12 +0.5 3,859,185 + CCNA_03693 0.14 -0.5 3,859,186 + CCNA_03693 0.14 +1.2 3,859,288 - CCNA_03693 0.27 +0.2 3,859,308 - CCNA_03693 0.30 +1.6 3,859,310 - CCNA_03693 0.30 +0.2 3,859,372 - CCNA_03693 0.38 +0.0 3,859,384 - CCNA_03693 0.40 -0.5 3,859,395 - CCNA_03693 0.42 +1.2 3,859,450 - CCNA_03693 0.49 +0.5 3,859,462 - CCNA_03693 0.50 -0.1 3,859,462 - CCNA_03693 0.50 +0.1 3,859,462 - CCNA_03693 0.50 -0.2 3,859,462 - CCNA_03693 0.50 -0.3 3,859,462 - CCNA_03693 0.50 +0.2 3,859,462 - CCNA_03693 0.50 +0.2 3,859,503 - CCNA_03693 0.56 +0.1 3,859,514 + CCNA_03693 0.57 -0.1 3,859,524 + CCNA_03693 0.59 +0.5 3,859,532 - CCNA_03693 0.60 +1.1 3,859,539 - CCNA_03693 0.61 +0.4 3,859,581 - CCNA_03693 0.66 +0.0 3,859,586 - CCNA_03693 0.67 +0.0 3,859,629 - CCNA_03693 0.72 -0.4 3,859,645 + CCNA_03693 0.75 -0.8 3,859,655 + CCNA_03693 0.76 -0.4 3,859,659 + CCNA_03693 0.76 +0.4 3,859,662 - CCNA_03693 0.77 +0.7 3,859,713 + CCNA_03693 0.84 -0.5 3,859,713 + CCNA_03693 0.84 -0.7 3,859,721 + CCNA_03693 0.85 -0.7 3,859,721 + CCNA_03693 0.85 +0.4 3,859,721 + CCNA_03693 0.85 -1.0 3,859,729 - CCNA_03693 0.86 +0.3 3,859,762 + +0.1 3,859,771 - -0.1 3,859,816 + -1.0 3,859,825 + +0.5 3,859,833 - -2.6 3,859,866 - +0.2 3,859,866 - +0.3 3,859,872 + -0.8 3,859,873 - -0.4 3,859,880 - -0.7 3,859,880 - -0.2 3,859,880 - -0.1 3,859,880 - -0.8 3,859,881 - -0.8
Or see this region's nucleotide sequence