Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03985 and CCNA_03113 overlap by 32 nucleotides CCNA_03113 and CCNA_03114 are separated by 78 nucleotides CCNA_03114 and CCNA_03115 are separated by 32 nucleotides
CCNA_03985: CCNA_03985 - hypothetical protein, at 3,263,371 to 3,263,811
_03985
CCNA_03113: CCNA_03113 - membrane-associated phospholipid phosphatase, at 3,263,780 to 3,264,499
_03113
CCNA_03114: CCNA_03114 - hypothetical protein, at 3,264,578 to 3,264,754
_03114
CCNA_03115: CCNA_03115 - cobaltochelatase cobS subunit, at 3,264,787 to 3,265,797
_03115
Position (kb)
3264
3265 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3263.592 kb on + strand, within CCNA_03985 at 3263.604 kb on + strand, within CCNA_03985 at 3263.612 kb on - strand, within CCNA_03985 at 3263.639 kb on + strand, within CCNA_03985 at 3263.639 kb on + strand, within CCNA_03985 at 3263.651 kb on + strand, within CCNA_03985 at 3263.709 kb on - strand, within CCNA_03985 at 3263.715 kb on + strand, within CCNA_03985 at 3263.723 kb on - strand, within CCNA_03985 at 3263.723 kb on - strand, within CCNA_03985 at 3263.724 kb on - strand, within CCNA_03985 at 3263.737 kb on + strand, within CCNA_03985 at 3263.745 kb on - strand, within CCNA_03985 at 3263.760 kb on + strand, within CCNA_03985 at 3263.761 kb on + strand, within CCNA_03985 at 3263.769 kb on - strand at 3263.769 kb on - strand at 3263.838 kb on + strand at 3263.856 kb on - strand, within CCNA_03113 at 3263.869 kb on + strand, within CCNA_03113 at 3263.894 kb on + strand, within CCNA_03113 at 3263.925 kb on + strand, within CCNA_03113 at 3263.938 kb on - strand, within CCNA_03113 at 3263.940 kb on - strand, within CCNA_03113 at 3263.978 kb on - strand, within CCNA_03113 at 3264.092 kb on + strand, within CCNA_03113 at 3264.100 kb on - strand, within CCNA_03113 at 3264.124 kb on + strand, within CCNA_03113 at 3264.132 kb on - strand, within CCNA_03113 at 3264.139 kb on - strand, within CCNA_03113 at 3264.142 kb on + strand, within CCNA_03113 at 3264.144 kb on - strand, within CCNA_03113 at 3264.147 kb on + strand, within CCNA_03113 at 3264.150 kb on - strand, within CCNA_03113 at 3264.179 kb on + strand, within CCNA_03113 at 3264.226 kb on + strand, within CCNA_03113 at 3264.236 kb on + strand, within CCNA_03113 at 3264.254 kb on + strand, within CCNA_03113 at 3264.254 kb on + strand, within CCNA_03113 at 3264.262 kb on - strand, within CCNA_03113 at 3264.262 kb on - strand, within CCNA_03113 at 3264.262 kb on - strand, within CCNA_03113 at 3264.302 kb on + strand, within CCNA_03113 at 3264.317 kb on - strand, within CCNA_03113 at 3264.334 kb on + strand, within CCNA_03113 at 3264.336 kb on + strand, within CCNA_03113 at 3264.336 kb on + strand, within CCNA_03113 at 3264.342 kb on - strand, within CCNA_03113 at 3264.344 kb on - strand, within CCNA_03113 at 3264.344 kb on - strand, within CCNA_03113 at 3264.352 kb on + strand, within CCNA_03113 at 3264.353 kb on + strand, within CCNA_03113 at 3264.353 kb on + strand, within CCNA_03113 at 3264.360 kb on + strand, within CCNA_03113 at 3264.360 kb on - strand, within CCNA_03113 at 3264.361 kb on - strand, within CCNA_03113 at 3264.367 kb on - strand, within CCNA_03113 at 3264.371 kb on + strand, within CCNA_03113 at 3264.390 kb on - strand, within CCNA_03113 at 3264.412 kb on - strand, within CCNA_03113 at 3264.501 kb on - strand at 3264.555 kb on - strand at 3264.595 kb on + strand at 3264.617 kb on + strand, within CCNA_03114 at 3264.657 kb on + strand, within CCNA_03114 at 3264.657 kb on + strand, within CCNA_03114 at 3264.662 kb on + strand, within CCNA_03114 at 3264.662 kb on + strand, within CCNA_03114 at 3264.704 kb on - strand, within CCNA_03114 at 3264.778 kb on + strand at 3264.789 kb on + strand at 3265.191 kb on + strand, within CCNA_03115 at 3265.277 kb on + strand, within CCNA_03115 at 3265.506 kb on + strand, within CCNA_03115 at 3265.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,263,592 + CCNA_03985 0.50 +0.3 3,263,604 + CCNA_03985 0.53 +0.3 3,263,612 - CCNA_03985 0.55 -0.7 3,263,639 + CCNA_03985 0.61 +0.8 3,263,639 + CCNA_03985 0.61 +0.0 3,263,651 + CCNA_03985 0.63 -0.2 3,263,709 - CCNA_03985 0.77 -0.5 3,263,715 + CCNA_03985 0.78 -0.6 3,263,723 - CCNA_03985 0.80 -0.8 3,263,723 - CCNA_03985 0.80 +0.1 3,263,724 - CCNA_03985 0.80 +0.2 3,263,737 + CCNA_03985 0.83 -1.1 3,263,745 - CCNA_03985 0.85 +0.5 3,263,760 + CCNA_03985 0.88 +1.2 3,263,761 + CCNA_03985 0.88 +0.3 3,263,769 - +0.7 3,263,769 - -0.8 3,263,838 + +0.0 3,263,856 - CCNA_03113 0.11 -0.3 3,263,869 + CCNA_03113 0.12 +0.6 3,263,894 + CCNA_03113 0.16 +0.1 3,263,925 + CCNA_03113 0.20 +0.9 3,263,938 - CCNA_03113 0.22 +0.1 3,263,940 - CCNA_03113 0.22 +0.9 3,263,978 - CCNA_03113 0.28 +0.9 3,264,092 + CCNA_03113 0.43 -1.3 3,264,100 - CCNA_03113 0.44 +0.6 3,264,124 + CCNA_03113 0.48 -0.9 3,264,132 - CCNA_03113 0.49 +0.1 3,264,139 - CCNA_03113 0.50 +0.5 3,264,142 + CCNA_03113 0.50 +0.1 3,264,144 - CCNA_03113 0.51 -0.2 3,264,147 + CCNA_03113 0.51 -0.3 3,264,150 - CCNA_03113 0.51 -0.6 3,264,179 + CCNA_03113 0.55 -0.5 3,264,226 + CCNA_03113 0.62 +1.3 3,264,236 + CCNA_03113 0.63 -0.2 3,264,254 + CCNA_03113 0.66 -0.5 3,264,254 + CCNA_03113 0.66 -0.6 3,264,262 - CCNA_03113 0.67 +0.8 3,264,262 - CCNA_03113 0.67 -0.0 3,264,262 - CCNA_03113 0.67 +0.5 3,264,302 + CCNA_03113 0.72 -0.4 3,264,317 - CCNA_03113 0.75 +0.2 3,264,334 + CCNA_03113 0.77 -2.7 3,264,336 + CCNA_03113 0.77 -0.1 3,264,336 + CCNA_03113 0.77 +2.7 3,264,342 - CCNA_03113 0.78 +0.2 3,264,344 - CCNA_03113 0.78 +0.1 3,264,344 - CCNA_03113 0.78 -0.2 3,264,352 + CCNA_03113 0.79 +0.7 3,264,353 + CCNA_03113 0.80 -1.5 3,264,353 + CCNA_03113 0.80 -0.6 3,264,360 + CCNA_03113 0.81 -0.3 3,264,360 - CCNA_03113 0.81 +0.5 3,264,361 - CCNA_03113 0.81 -1.3 3,264,367 - CCNA_03113 0.82 -0.3 3,264,371 + CCNA_03113 0.82 +1.0 3,264,390 - CCNA_03113 0.85 +0.3 3,264,412 - CCNA_03113 0.88 -0.3 3,264,501 - +2.1 3,264,555 - +0.3 3,264,595 + +0.4 3,264,617 + CCNA_03114 0.22 -0.5 3,264,657 + CCNA_03114 0.45 +0.4 3,264,657 + CCNA_03114 0.45 -1.6 3,264,662 + CCNA_03114 0.47 -0.7 3,264,662 + CCNA_03114 0.47 +1.5 3,264,704 - CCNA_03114 0.71 -0.6 3,264,778 + -0.3 3,264,789 + -0.2 3,265,191 + CCNA_03115 0.40 +1.4 3,265,277 + CCNA_03115 0.48 -0.8 3,265,506 + CCNA_03115 0.71 -0.5 3,265,698 + -1.8
Or see this region's nucleotide sequence