Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03098 and CCNA_03099 are separated by 1 nucleotides CCNA_03099 and CCNA_03100 are separated by 50 nucleotides CCNA_03100 and CCNA_03101 are separated by 97 nucleotides
CCNA_03098: CCNA_03098 - hypothetical protein, at 3,249,391 to 3,250,341
_03098
CCNA_03099: CCNA_03099 - hypothetical protein, at 3,250,343 to 3,251,083
_03099
CCNA_03100: CCNA_03100 - alkylphosphonate utilization operon protein PhnA, at 3,251,134 to 3,251,355
_03100
CCNA_03101: CCNA_03101 - site-specific tyrosine recombinase XerD, at 3,251,453 to 3,252,370
_03101
Position (kb)
3251
3252 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3250.136 kb on - strand, within CCNA_03098 at 3250.136 kb on - strand, within CCNA_03098 at 3250.138 kb on + strand, within CCNA_03098 at 3250.175 kb on + strand, within CCNA_03098 at 3250.178 kb on + strand, within CCNA_03098 at 3250.178 kb on - strand, within CCNA_03098 at 3250.188 kb on - strand, within CCNA_03098 at 3250.188 kb on - strand, within CCNA_03098 at 3250.202 kb on - strand, within CCNA_03098 at 3250.219 kb on + strand, within CCNA_03098 at 3250.251 kb on + strand at 3250.317 kb on - strand at 3250.331 kb on + strand at 3250.341 kb on - strand at 3250.357 kb on + strand at 3250.375 kb on - strand at 3250.446 kb on + strand, within CCNA_03099 at 3250.447 kb on + strand, within CCNA_03099 at 3250.454 kb on - strand, within CCNA_03099 at 3250.454 kb on - strand, within CCNA_03099 at 3250.454 kb on - strand, within CCNA_03099 at 3250.454 kb on - strand, within CCNA_03099 at 3250.455 kb on + strand, within CCNA_03099 at 3250.456 kb on + strand, within CCNA_03099 at 3250.456 kb on + strand, within CCNA_03099 at 3250.463 kb on - strand, within CCNA_03099 at 3250.465 kb on + strand, within CCNA_03099 at 3250.470 kb on + strand, within CCNA_03099 at 3250.494 kb on + strand, within CCNA_03099 at 3250.497 kb on - strand, within CCNA_03099 at 3250.502 kb on - strand, within CCNA_03099 at 3250.502 kb on - strand, within CCNA_03099 at 3250.528 kb on - strand, within CCNA_03099 at 3250.610 kb on - strand, within CCNA_03099 at 3250.644 kb on - strand, within CCNA_03099 at 3250.652 kb on - strand, within CCNA_03099 at 3250.664 kb on + strand, within CCNA_03099 at 3250.664 kb on + strand, within CCNA_03099 at 3250.671 kb on + strand, within CCNA_03099 at 3250.671 kb on + strand, within CCNA_03099 at 3250.672 kb on - strand, within CCNA_03099 at 3250.672 kb on - strand, within CCNA_03099 at 3250.679 kb on - strand, within CCNA_03099 at 3250.683 kb on + strand, within CCNA_03099 at 3250.711 kb on - strand, within CCNA_03099 at 3250.712 kb on - strand, within CCNA_03099 at 3250.717 kb on - strand, within CCNA_03099 at 3250.764 kb on + strand, within CCNA_03099 at 3250.766 kb on - strand, within CCNA_03099 at 3250.766 kb on - strand, within CCNA_03099 at 3250.797 kb on + strand, within CCNA_03099 at 3250.832 kb on - strand, within CCNA_03099 at 3250.836 kb on + strand, within CCNA_03099 at 3250.887 kb on + strand, within CCNA_03099 at 3250.893 kb on + strand, within CCNA_03099 at 3250.893 kb on + strand, within CCNA_03099 at 3250.982 kb on - strand, within CCNA_03099 at 3251.060 kb on - strand at 3251.089 kb on + strand at 3251.108 kb on - strand at 3251.121 kb on + strand at 3251.121 kb on + strand at 3251.127 kb on + strand at 3251.171 kb on + strand, within CCNA_03100 at 3251.186 kb on + strand, within CCNA_03100 at 3251.186 kb on + strand, within CCNA_03100 at 3251.187 kb on + strand, within CCNA_03100 at 3251.192 kb on + strand, within CCNA_03100 at 3251.192 kb on + strand, within CCNA_03100 at 3251.192 kb on + strand, within CCNA_03100 at 3251.245 kb on - strand, within CCNA_03100 at 3251.263 kb on + strand, within CCNA_03100 at 3251.276 kb on + strand, within CCNA_03100 at 3251.276 kb on + strand, within CCNA_03100 at 3251.276 kb on + strand, within CCNA_03100 at 3251.284 kb on - strand, within CCNA_03100 at 3251.284 kb on - strand, within CCNA_03100 at 3251.293 kb on - strand, within CCNA_03100 at 3251.295 kb on + strand, within CCNA_03100 at 3251.303 kb on - strand, within CCNA_03100 at 3251.322 kb on - strand, within CCNA_03100 at 3251.361 kb on - strand at 3251.420 kb on + strand at 3251.458 kb on - strand at 3251.458 kb on - strand at 3251.531 kb on - strand at 3251.531 kb on - strand at 3251.564 kb on + strand, within CCNA_03101 at 3251.629 kb on - strand, within CCNA_03101 at 3251.716 kb on - strand, within CCNA_03101 at 3251.754 kb on + strand, within CCNA_03101 at 3251.945 kb on - strand, within CCNA_03101 at 3251.987 kb on - strand, within CCNA_03101 at 3252.029 kb on + strand, within CCNA_03101 at 3252.037 kb on - strand, within CCNA_03101 at 3252.037 kb on - strand, within CCNA_03101 at 3252.233 kb on + strand, within CCNA_03101 at 3252.269 kb on + strand, within CCNA_03101
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 3,250,136 - CCNA_03098 0.78 +0.2 3,250,136 - CCNA_03098 0.78 -0.2 3,250,138 + CCNA_03098 0.79 -0.3 3,250,175 + CCNA_03098 0.82 -0.4 3,250,178 + CCNA_03098 0.83 +0.5 3,250,178 - CCNA_03098 0.83 +0.7 3,250,188 - CCNA_03098 0.84 +0.6 3,250,188 - CCNA_03098 0.84 -0.8 3,250,202 - CCNA_03098 0.85 -0.8 3,250,219 + CCNA_03098 0.87 -0.0 3,250,251 + -0.1 3,250,317 - -1.8 3,250,331 + -0.3 3,250,341 - -0.2 3,250,357 + +0.1 3,250,375 - -0.5 3,250,446 + CCNA_03099 0.14 -0.3 3,250,447 + CCNA_03099 0.14 -0.5 3,250,454 - CCNA_03099 0.15 -0.1 3,250,454 - CCNA_03099 0.15 +0.1 3,250,454 - CCNA_03099 0.15 -0.2 3,250,454 - CCNA_03099 0.15 +1.1 3,250,455 + CCNA_03099 0.15 +0.8 3,250,456 + CCNA_03099 0.15 -0.0 3,250,456 + CCNA_03099 0.15 +0.6 3,250,463 - CCNA_03099 0.16 -0.6 3,250,465 + CCNA_03099 0.16 -0.6 3,250,470 + CCNA_03099 0.17 +1.4 3,250,494 + CCNA_03099 0.20 -0.4 3,250,497 - CCNA_03099 0.21 -0.3 3,250,502 - CCNA_03099 0.21 -0.2 3,250,502 - CCNA_03099 0.21 -0.6 3,250,528 - CCNA_03099 0.25 +0.4 3,250,610 - CCNA_03099 0.36 -2.0 3,250,644 - CCNA_03099 0.41 +0.1 3,250,652 - CCNA_03099 0.42 +0.0 3,250,664 + CCNA_03099 0.43 -0.8 3,250,664 + CCNA_03099 0.43 -0.5 3,250,671 + CCNA_03099 0.44 -1.1 3,250,671 + CCNA_03099 0.44 +1.0 3,250,672 - CCNA_03099 0.44 -0.3 3,250,672 - CCNA_03099 0.44 +0.2 3,250,679 - CCNA_03099 0.45 -0.7 3,250,683 + CCNA_03099 0.46 -0.0 3,250,711 - CCNA_03099 0.50 -1.4 3,250,712 - CCNA_03099 0.50 -0.1 3,250,717 - CCNA_03099 0.50 +0.1 3,250,764 + CCNA_03099 0.57 -0.5 3,250,766 - CCNA_03099 0.57 -2.1 3,250,766 - CCNA_03099 0.57 -0.5 3,250,797 + CCNA_03099 0.61 +1.4 3,250,832 - CCNA_03099 0.66 +0.2 3,250,836 + CCNA_03099 0.67 -0.5 3,250,887 + CCNA_03099 0.73 +0.2 3,250,893 + CCNA_03099 0.74 -0.0 3,250,893 + CCNA_03099 0.74 -1.1 3,250,982 - CCNA_03099 0.86 -0.8 3,251,060 - +0.9 3,251,089 + +1.1 3,251,108 - +0.5 3,251,121 + +0.1 3,251,121 + +0.6 3,251,127 + +1.0 3,251,171 + CCNA_03100 0.17 +0.8 3,251,186 + CCNA_03100 0.23 +0.3 3,251,186 + CCNA_03100 0.23 +0.1 3,251,187 + CCNA_03100 0.24 +0.6 3,251,192 + CCNA_03100 0.26 -0.6 3,251,192 + CCNA_03100 0.26 -0.5 3,251,192 + CCNA_03100 0.26 +2.0 3,251,245 - CCNA_03100 0.50 -0.1 3,251,263 + CCNA_03100 0.58 -1.2 3,251,276 + CCNA_03100 0.64 +0.3 3,251,276 + CCNA_03100 0.64 +0.1 3,251,276 + CCNA_03100 0.64 +0.1 3,251,284 - CCNA_03100 0.68 +0.2 3,251,284 - CCNA_03100 0.68 -0.8 3,251,293 - CCNA_03100 0.72 -0.2 3,251,295 + CCNA_03100 0.73 +0.1 3,251,303 - CCNA_03100 0.76 -0.6 3,251,322 - CCNA_03100 0.85 -0.6 3,251,361 - -0.7 3,251,420 + +0.4 3,251,458 - +0.7 3,251,458 - -0.6 3,251,531 - -0.1 3,251,531 - +0.4 3,251,564 + CCNA_03101 0.12 -0.3 3,251,629 - CCNA_03101 0.19 -0.2 3,251,716 - CCNA_03101 0.29 +0.7 3,251,754 + CCNA_03101 0.33 -1.1 3,251,945 - CCNA_03101 0.54 -1.3 3,251,987 - CCNA_03101 0.58 +0.4 3,252,029 + CCNA_03101 0.63 -0.9 3,252,037 - CCNA_03101 0.64 -1.5 3,252,037 - CCNA_03101 0.64 +0.1 3,252,233 + CCNA_03101 0.85 +0.6 3,252,269 + CCNA_03101 0.89 -0.6
Or see this region's nucleotide sequence