Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02827 and CCNA_02828 overlap by 7 nucleotides CCNA_02828 and CCNA_02829 overlap by 29 nucleotides CCNA_02829 and CCNA_03980 overlap by 4 nucleotides CCNA_03980 and CCNA_02830 are separated by 246 nucleotides CCNA_02830 and CCNA_02831 are separated by 78 nucleotides
CCNA_02827: CCNA_02827 - transposase, at 2,982,256 to 2,982,522
_02827
CCNA_02828: CCNA_02828 - transposase, at 2,982,516 to 2,983,442
_02828
CCNA_02829: CCNA_02829 - peptidase S8 family protein, at 2,983,414 to 2,984,598
_02829
CCNA_03980: CCNA_03980 - hypothetical protein, at 2,984,595 to 2,984,720
_03980
CCNA_02830: CCNA_02830 - MPN domain protein, at 2,984,967 to 2,985,137
_02830
CCNA_02831: CCNA_02831 - hypothetical protein, at 2,985,216 to 2,985,773
_02831
Position (kb)
2983
2984
2985 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2983.422 kb on + strand at 2983.488 kb on + strand at 2983.489 kb on + strand at 2983.489 kb on - strand at 2983.494 kb on + strand at 2983.502 kb on + strand at 2983.502 kb on + strand at 2983.502 kb on + strand at 2983.502 kb on + strand at 2983.502 kb on + strand at 2983.502 kb on + strand at 2983.510 kb on - strand at 2983.510 kb on - strand at 2983.514 kb on + strand at 2983.527 kb on + strand at 2983.580 kb on - strand, within CCNA_02829 at 2983.605 kb on + strand, within CCNA_02829 at 2983.610 kb on + strand, within CCNA_02829 at 2983.618 kb on - strand, within CCNA_02829 at 2983.631 kb on + strand, within CCNA_02829 at 2983.678 kb on + strand, within CCNA_02829 at 2983.681 kb on - strand, within CCNA_02829 at 2983.686 kb on - strand, within CCNA_02829 at 2983.686 kb on - strand, within CCNA_02829 at 2983.696 kb on + strand, within CCNA_02829 at 2983.704 kb on + strand, within CCNA_02829 at 2983.704 kb on - strand, within CCNA_02829 at 2983.704 kb on - strand, within CCNA_02829 at 2983.706 kb on + strand, within CCNA_02829 at 2983.706 kb on + strand, within CCNA_02829 at 2983.714 kb on - strand, within CCNA_02829 at 2983.714 kb on - strand, within CCNA_02829 at 2983.782 kb on + strand, within CCNA_02829 at 2983.790 kb on - strand, within CCNA_02829 at 2983.798 kb on + strand, within CCNA_02829 at 2983.828 kb on + strand, within CCNA_02829 at 2983.828 kb on + strand, within CCNA_02829 at 2983.833 kb on + strand, within CCNA_02829 at 2983.836 kb on - strand, within CCNA_02829 at 2983.836 kb on - strand, within CCNA_02829 at 2983.841 kb on - strand, within CCNA_02829 at 2983.872 kb on - strand, within CCNA_02829 at 2983.911 kb on + strand, within CCNA_02829 at 2983.925 kb on + strand, within CCNA_02829 at 2983.930 kb on + strand, within CCNA_02829 at 2983.961 kb on + strand, within CCNA_02829 at 2983.964 kb on - strand, within CCNA_02829 at 2983.992 kb on + strand, within CCNA_02829 at 2983.993 kb on + strand, within CCNA_02829 at 2984.000 kb on - strand, within CCNA_02829 at 2984.000 kb on - strand, within CCNA_02829 at 2984.011 kb on - strand, within CCNA_02829 at 2984.078 kb on - strand, within CCNA_02829 at 2984.078 kb on - strand, within CCNA_02829 at 2984.094 kb on - strand, within CCNA_02829 at 2984.119 kb on - strand, within CCNA_02829 at 2984.131 kb on + strand, within CCNA_02829 at 2984.148 kb on + strand, within CCNA_02829 at 2984.200 kb on - strand, within CCNA_02829 at 2984.327 kb on + strand, within CCNA_02829 at 2984.340 kb on - strand, within CCNA_02829 at 2984.462 kb on + strand, within CCNA_02829 at 2984.519 kb on + strand at 2984.519 kb on + strand at 2984.527 kb on - strand at 2984.540 kb on - strand at 2984.552 kb on - strand at 2984.588 kb on - strand at 2984.630 kb on - strand, within CCNA_03980 at 2984.660 kb on - strand, within CCNA_03980 at 2984.660 kb on - strand, within CCNA_03980 at 2984.675 kb on + strand, within CCNA_03980 at 2984.675 kb on + strand, within CCNA_03980 at 2984.675 kb on + strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.716 kb on - strand at 2984.739 kb on + strand at 2984.762 kb on + strand at 2984.772 kb on + strand at 2984.772 kb on + strand at 2984.772 kb on + strand at 2984.987 kb on + strand, within CCNA_02830 at 2985.057 kb on + strand, within CCNA_02830 at 2985.057 kb on + strand, within CCNA_02830 at 2985.057 kb on + strand, within CCNA_02830 at 2985.065 kb on - strand, within CCNA_02830 at 2985.065 kb on - strand, within CCNA_02830 at 2985.065 kb on - strand, within CCNA_02830 at 2985.110 kb on - strand, within CCNA_02830 at 2985.129 kb on - strand at 2985.207 kb on - strand at 2985.214 kb on - strand at 2985.214 kb on - strand at 2985.258 kb on + strand at 2985.269 kb on + strand at 2985.304 kb on - strand, within CCNA_02831 at 2985.304 kb on - strand, within CCNA_02831 at 2985.306 kb on + strand, within CCNA_02831 at 2985.353 kb on - strand, within CCNA_02831 at 2985.376 kb on + strand, within CCNA_02831 at 2985.376 kb on + strand, within CCNA_02831 at 2985.376 kb on + strand, within CCNA_02831 at 2985.376 kb on + strand, within CCNA_02831 at 2985.381 kb on + strand, within CCNA_02831 at 2985.440 kb on + strand, within CCNA_02831 at 2985.441 kb on + strand, within CCNA_02831 at 2985.449 kb on - strand, within CCNA_02831 at 2985.473 kb on + strand, within CCNA_02831 at 2985.497 kb on + strand, within CCNA_02831 at 2985.497 kb on + strand, within CCNA_02831 at 2985.557 kb on - strand, within CCNA_02831 at 2985.557 kb on - strand, within CCNA_02831 at 2985.564 kb on - strand, within CCNA_02831 at 2985.564 kb on - strand, within CCNA_02831 at 2985.564 kb on - strand, within CCNA_02831 at 2985.574 kb on + strand, within CCNA_02831 at 2985.578 kb on + strand, within CCNA_02831 at 2985.584 kb on + strand, within CCNA_02831 at 2985.584 kb on + strand, within CCNA_02831 at 2985.594 kb on + strand, within CCNA_02831 at 2985.594 kb on + strand, within CCNA_02831 at 2985.594 kb on + strand, within CCNA_02831 at 2985.595 kb on + strand, within CCNA_02831
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,983,422 + +0.7 2,983,488 + +0.2 2,983,489 + +0.1 2,983,489 - -0.9 2,983,494 + +0.3 2,983,502 + -1.0 2,983,502 + -1.1 2,983,502 + +0.0 2,983,502 + +0.0 2,983,502 + +0.0 2,983,502 + -0.3 2,983,510 - -0.0 2,983,510 - -0.1 2,983,514 + -2.0 2,983,527 + -0.7 2,983,580 - CCNA_02829 0.14 +1.1 2,983,605 + CCNA_02829 0.16 -0.1 2,983,610 + CCNA_02829 0.17 +1.3 2,983,618 - CCNA_02829 0.17 -1.8 2,983,631 + CCNA_02829 0.18 -0.3 2,983,678 + CCNA_02829 0.22 +0.2 2,983,681 - CCNA_02829 0.23 -0.5 2,983,686 - CCNA_02829 0.23 -1.5 2,983,686 - CCNA_02829 0.23 -0.7 2,983,696 + CCNA_02829 0.24 +0.6 2,983,704 + CCNA_02829 0.24 +0.1 2,983,704 - CCNA_02829 0.24 -0.1 2,983,704 - CCNA_02829 0.24 -1.2 2,983,706 + CCNA_02829 0.25 -0.0 2,983,706 + CCNA_02829 0.25 +1.8 2,983,714 - CCNA_02829 0.25 +0.3 2,983,714 - CCNA_02829 0.25 -1.7 2,983,782 + CCNA_02829 0.31 -0.8 2,983,790 - CCNA_02829 0.32 -0.4 2,983,798 + CCNA_02829 0.32 -0.3 2,983,828 + CCNA_02829 0.35 -0.6 2,983,828 + CCNA_02829 0.35 +0.1 2,983,833 + CCNA_02829 0.35 -0.7 2,983,836 - CCNA_02829 0.36 -0.1 2,983,836 - CCNA_02829 0.36 -0.9 2,983,841 - CCNA_02829 0.36 +0.3 2,983,872 - CCNA_02829 0.39 +1.6 2,983,911 + CCNA_02829 0.42 +0.8 2,983,925 + CCNA_02829 0.43 -0.1 2,983,930 + CCNA_02829 0.44 -0.8 2,983,961 + CCNA_02829 0.46 -1.5 2,983,964 - CCNA_02829 0.46 -2.3 2,983,992 + CCNA_02829 0.49 +0.5 2,983,993 + CCNA_02829 0.49 -1.1 2,984,000 - CCNA_02829 0.49 -0.2 2,984,000 - CCNA_02829 0.49 +0.6 2,984,011 - CCNA_02829 0.50 +1.0 2,984,078 - CCNA_02829 0.56 +0.1 2,984,078 - CCNA_02829 0.56 +0.4 2,984,094 - CCNA_02829 0.57 +0.2 2,984,119 - CCNA_02829 0.59 +0.7 2,984,131 + CCNA_02829 0.61 -0.0 2,984,148 + CCNA_02829 0.62 -1.1 2,984,200 - CCNA_02829 0.66 -0.3 2,984,327 + CCNA_02829 0.77 +0.1 2,984,340 - CCNA_02829 0.78 -0.3 2,984,462 + CCNA_02829 0.88 -0.3 2,984,519 + -1.9 2,984,519 + -1.1 2,984,527 - -0.7 2,984,540 - -0.3 2,984,552 - -0.1 2,984,588 - -0.1 2,984,630 - CCNA_03980 0.28 -0.1 2,984,660 - CCNA_03980 0.52 -0.3 2,984,660 - CCNA_03980 0.52 -1.1 2,984,675 + CCNA_03980 0.63 -0.5 2,984,675 + CCNA_03980 0.63 -1.5 2,984,675 + CCNA_03980 0.63 -0.2 2,984,683 - CCNA_03980 0.70 +0.1 2,984,683 - CCNA_03980 0.70 -0.4 2,984,683 - CCNA_03980 0.70 -0.8 2,984,683 - CCNA_03980 0.70 +1.0 2,984,683 - CCNA_03980 0.70 +0.1 2,984,683 - CCNA_03980 0.70 -0.0 2,984,683 - CCNA_03980 0.70 +0.1 2,984,716 - +0.9 2,984,739 + +0.1 2,984,762 + -0.4 2,984,772 + -1.5 2,984,772 + +0.2 2,984,772 + +2.0 2,984,987 + CCNA_02830 0.12 +1.0 2,985,057 + CCNA_02830 0.53 -0.7 2,985,057 + CCNA_02830 0.53 -0.9 2,985,057 + CCNA_02830 0.53 +0.6 2,985,065 - CCNA_02830 0.57 +0.3 2,985,065 - CCNA_02830 0.57 -1.0 2,985,065 - CCNA_02830 0.57 -0.8 2,985,110 - CCNA_02830 0.84 +0.0 2,985,129 - -0.8 2,985,207 - +1.3 2,985,214 - +0.2 2,985,214 - +0.6 2,985,258 + +0.0 2,985,269 + +0.3 2,985,304 - CCNA_02831 0.16 -0.6 2,985,304 - CCNA_02831 0.16 -0.1 2,985,306 + CCNA_02831 0.16 -0.9 2,985,353 - CCNA_02831 0.25 +1.1 2,985,376 + CCNA_02831 0.29 +0.0 2,985,376 + CCNA_02831 0.29 -0.7 2,985,376 + CCNA_02831 0.29 -0.7 2,985,376 + CCNA_02831 0.29 +0.5 2,985,381 + CCNA_02831 0.30 +0.1 2,985,440 + CCNA_02831 0.40 -0.8 2,985,441 + CCNA_02831 0.40 -0.5 2,985,449 - CCNA_02831 0.42 -1.6 2,985,473 + CCNA_02831 0.46 -0.1 2,985,497 + CCNA_02831 0.50 +0.5 2,985,497 + CCNA_02831 0.50 +0.6 2,985,557 - CCNA_02831 0.61 -0.8 2,985,557 - CCNA_02831 0.61 +0.6 2,985,564 - CCNA_02831 0.62 +0.3 2,985,564 - CCNA_02831 0.62 +0.0 2,985,564 - CCNA_02831 0.62 +1.3 2,985,574 + CCNA_02831 0.64 -0.3 2,985,578 + CCNA_02831 0.65 -0.4 2,985,584 + CCNA_02831 0.66 -0.8 2,985,584 + CCNA_02831 0.66 -1.5 2,985,594 + CCNA_02831 0.68 +0.1 2,985,594 + CCNA_02831 0.68 -0.7 2,985,594 + CCNA_02831 0.68 -0.4 2,985,595 + CCNA_02831 0.68 +0.1
Or see this region's nucleotide sequence