Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02814

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02811 and CCNA_02812 are separated by 161 nucleotidesCCNA_02812 and CCNA_02813 overlap by 4 nucleotidesCCNA_02813 and CCNA_02814 overlap by 4 nucleotidesCCNA_02814 and CCNA_02815 are separated by 52 nucleotides CCNA_02811: CCNA_02811 - heavy metal translocating P-type ATPase, at 2,967,624 to 2,969,657 _02811 CCNA_02812: CCNA_02812 - glutaredoxin, at 2,969,819 to 2,970,106 _02812 CCNA_02813: CCNA_02813 - transposase, at 2,970,103 to 2,970,537 _02813 CCNA_02814: CCNA_02814 - transposase, at 2,970,534 to 2,971,514 _02814 CCNA_02815: CCNA_02815 - ice nucleation protein, at 2,971,567 to 2,973,531 _02815 Position (kb) 2970 2971 2972Strain fitness (log2 ratio) -3 -2 -1 0 1at 2969.537 kb on + strandat 2969.559 kb on + strandat 2969.574 kb on + strandat 2969.591 kb on + strandat 2969.612 kb on + strandat 2969.714 kb on + strandat 2969.722 kb on - strandat 2969.722 kb on - strandat 2969.722 kb on - strandat 2969.723 kb on - strandat 2969.758 kb on - strandat 2969.764 kb on + strandat 2969.772 kb on - strandat 2969.778 kb on + strandat 2969.807 kb on + strandat 2969.863 kb on + strand, within CCNA_02812at 2969.876 kb on - strand, within CCNA_02812at 2969.937 kb on + strand, within CCNA_02812at 2969.952 kb on + strand, within CCNA_02812at 2969.952 kb on + strand, within CCNA_02812at 2969.971 kb on + strand, within CCNA_02812at 2969.983 kb on + strand, within CCNA_02812at 2969.992 kb on - strand, within CCNA_02812at 2970.025 kb on + strand, within CCNA_02812at 2970.040 kb on - strand, within CCNA_02812at 2970.056 kb on + strand, within CCNA_02812at 2970.056 kb on + strand, within CCNA_02812at 2970.064 kb on - strand, within CCNA_02812at 2970.074 kb on - strand, within CCNA_02812at 2970.122 kb on - strandat 2971.597 kb on - strandat 2971.606 kb on - strandat 2971.606 kb on - strandat 2971.606 kb on - strandat 2971.606 kb on - strandat 2971.638 kb on + strandat 2971.646 kb on - strandat 2971.669 kb on - strandat 2971.679 kb on - strandat 2971.734 kb on + strandat 2971.762 kb on - strandat 2971.766 kb on + strand, within CCNA_02815at 2971.766 kb on + strand, within CCNA_02815at 2971.766 kb on + strand, within CCNA_02815at 2971.774 kb on - strand, within CCNA_02815at 2971.774 kb on - strand, within CCNA_02815at 2971.814 kb on + strand, within CCNA_02815at 2971.819 kb on + strand, within CCNA_02815at 2971.901 kb on + strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.929 kb on + strand, within CCNA_02815at 2971.929 kb on + strand, within CCNA_02815at 2971.935 kb on - strand, within CCNA_02815at 2971.937 kb on - strand, within CCNA_02815at 2971.951 kb on + strand, within CCNA_02815at 2971.951 kb on + strand, within CCNA_02815at 2971.951 kb on + strand, within CCNA_02815at 2971.951 kb on + strand, within CCNA_02815at 2971.951 kb on + strand, within CCNA_02815at 2971.956 kb on + strand, within CCNA_02815at 2971.959 kb on - strand, within CCNA_02815at 2971.961 kb on + strand, within CCNA_02815at 2971.961 kb on + strand, within CCNA_02815at 2971.961 kb on + strand, within CCNA_02815at 2971.964 kb on - strand, within CCNA_02815at 2971.969 kb on - strand, within CCNA_02815at 2971.969 kb on - strand, within CCNA_02815at 2971.969 kb on - strand, within CCNA_02815at 2971.979 kb on - strand, within CCNA_02815at 2972.018 kb on - strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.041 kb on - strand, within CCNA_02815at 2972.046 kb on - strand, within CCNA_02815at 2972.103 kb on - strand, within CCNA_02815at 2972.107 kb on + strand, within CCNA_02815at 2972.107 kb on + strand, within CCNA_02815at 2972.134 kb on - strand, within CCNA_02815at 2972.177 kb on + strand, within CCNA_02815at 2972.193 kb on - strand, within CCNA_02815at 2972.235 kb on + strand, within CCNA_02815at 2972.240 kb on + strand, within CCNA_02815at 2972.248 kb on - strand, within CCNA_02815at 2972.253 kb on - strand, within CCNA_02815at 2972.253 kb on - strand, within CCNA_02815at 2972.284 kb on - strand, within CCNA_02815at 2972.322 kb on - strand, within CCNA_02815at 2972.332 kb on - strand, within CCNA_02815at 2972.356 kb on - strand, within CCNA_02815at 2972.358 kb on + strand, within CCNA_02815at 2972.371 kb on - strand, within CCNA_02815at 2972.407 kb on - strand, within CCNA_02815at 2972.445 kb on - strand, within CCNA_02815at 2972.461 kb on + strand, within CCNA_02815at 2972.484 kb on - strand, within CCNA_02815at 2972.502 kb on + strand, within CCNA_02815at 2972.507 kb on + strand, within CCNA_02815at 2972.507 kb on + strand, within CCNA_02815

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,969,537 + +0.8
2,969,559 + -0.0
2,969,574 + -0.0
2,969,591 + -0.1
2,969,612 + +0.1
2,969,714 + +0.5
2,969,722 - +0.2
2,969,722 - -1.0
2,969,722 - -0.8
2,969,723 - -1.9
2,969,758 - +0.2
2,969,764 + -0.3
2,969,772 - +0.0
2,969,778 + +0.9
2,969,807 + +0.2
2,969,863 + CCNA_02812 0.15 +0.0
2,969,876 - CCNA_02812 0.20 +0.6
2,969,937 + CCNA_02812 0.41 +0.2
2,969,952 + CCNA_02812 0.46 +0.5
2,969,952 + CCNA_02812 0.46 +1.5
2,969,971 + CCNA_02812 0.53 -0.5
2,969,983 + CCNA_02812 0.57 -2.0
2,969,992 - CCNA_02812 0.60 -0.8
2,970,025 + CCNA_02812 0.72 +0.6
2,970,040 - CCNA_02812 0.77 -1.2
2,970,056 + CCNA_02812 0.82 +0.2
2,970,056 + CCNA_02812 0.82 +0.1
2,970,064 - CCNA_02812 0.85 -0.3
2,970,074 - CCNA_02812 0.89 -0.5
2,970,122 - -2.3
2,971,597 - -1.8
2,971,606 - -1.6
2,971,606 - -0.3
2,971,606 - +0.1
2,971,606 - -0.3
2,971,638 + +0.2
2,971,646 - +0.4
2,971,669 - +0.4
2,971,679 - +0.9
2,971,734 + -0.2
2,971,762 - +1.6
2,971,766 + CCNA_02815 0.10 +0.6
2,971,766 + CCNA_02815 0.10 -2.8
2,971,766 + CCNA_02815 0.10 +0.9
2,971,774 - CCNA_02815 0.11 -0.5
2,971,774 - CCNA_02815 0.11 +0.1
2,971,814 + CCNA_02815 0.13 +0.4
2,971,819 + CCNA_02815 0.13 -1.0
2,971,901 + CCNA_02815 0.17 -0.2
2,971,912 + CCNA_02815 0.18 -0.4
2,971,912 + CCNA_02815 0.18 -0.0
2,971,912 + CCNA_02815 0.18 +0.8
2,971,912 + CCNA_02815 0.18 -1.4
2,971,912 + CCNA_02815 0.18 -0.4
2,971,929 + CCNA_02815 0.18 -0.3
2,971,929 + CCNA_02815 0.18 -1.5
2,971,935 - CCNA_02815 0.19 -0.2
2,971,937 - CCNA_02815 0.19 +0.1
2,971,951 + CCNA_02815 0.20 +1.3
2,971,951 + CCNA_02815 0.20 +1.1
2,971,951 + CCNA_02815 0.20 -0.7
2,971,951 + CCNA_02815 0.20 -1.1
2,971,951 + CCNA_02815 0.20 -1.7
2,971,956 + CCNA_02815 0.20 +0.4
2,971,959 - CCNA_02815 0.20 -0.8
2,971,961 + CCNA_02815 0.20 +1.0
2,971,961 + CCNA_02815 0.20 +0.7
2,971,961 + CCNA_02815 0.20 -0.0
2,971,964 - CCNA_02815 0.20 +0.1
2,971,969 - CCNA_02815 0.20 -0.2
2,971,969 - CCNA_02815 0.20 -1.0
2,971,969 - CCNA_02815 0.20 +0.2
2,971,979 - CCNA_02815 0.21 +0.2
2,972,018 - CCNA_02815 0.23 +0.6
2,972,033 + CCNA_02815 0.24 +0.2
2,972,033 + CCNA_02815 0.24 -2.5
2,972,033 + CCNA_02815 0.24 +0.2
2,972,033 + CCNA_02815 0.24 -0.3
2,972,033 + CCNA_02815 0.24 -0.1
2,972,041 - CCNA_02815 0.24 -0.7
2,972,046 - CCNA_02815 0.24 +0.3
2,972,103 - CCNA_02815 0.27 +1.2
2,972,107 + CCNA_02815 0.27 -1.1
2,972,107 + CCNA_02815 0.27 -0.1
2,972,134 - CCNA_02815 0.29 -0.5
2,972,177 + CCNA_02815 0.31 -0.5
2,972,193 - CCNA_02815 0.32 +1.1
2,972,235 + CCNA_02815 0.34 -0.3
2,972,240 + CCNA_02815 0.34 +0.2
2,972,248 - CCNA_02815 0.35 -1.0
2,972,253 - CCNA_02815 0.35 -0.4
2,972,253 - CCNA_02815 0.35 -0.6
2,972,284 - CCNA_02815 0.36 +0.8
2,972,322 - CCNA_02815 0.38 -0.6
2,972,332 - CCNA_02815 0.39 +0.1
2,972,356 - CCNA_02815 0.40 -0.0
2,972,358 + CCNA_02815 0.40 +1.4
2,972,371 - CCNA_02815 0.41 -0.2
2,972,407 - CCNA_02815 0.43 +0.0
2,972,445 - CCNA_02815 0.45 +0.3
2,972,461 + CCNA_02815 0.45 +0.8
2,972,484 - CCNA_02815 0.47 +0.5
2,972,502 + CCNA_02815 0.48 -1.8
2,972,507 + CCNA_02815 0.48 -0.2
2,972,507 + CCNA_02815 0.48 -0.9

Or see this region's nucleotide sequence