Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02811 and CCNA_02812 are separated by 161 nucleotides CCNA_02812 and CCNA_02813 overlap by 4 nucleotides CCNA_02813 and CCNA_02814 overlap by 4 nucleotides CCNA_02814 and CCNA_02815 are separated by 52 nucleotides
CCNA_02811: CCNA_02811 - heavy metal translocating P-type ATPase, at 2,967,624 to 2,969,657
_02811
CCNA_02812: CCNA_02812 - glutaredoxin, at 2,969,819 to 2,970,106
_02812
CCNA_02813: CCNA_02813 - transposase, at 2,970,103 to 2,970,537
_02813
CCNA_02814: CCNA_02814 - transposase, at 2,970,534 to 2,971,514
_02814
CCNA_02815: CCNA_02815 - ice nucleation protein, at 2,971,567 to 2,973,531
_02815
Position (kb)
2970
2971
2972 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2969.537 kb on + strand at 2969.559 kb on + strand at 2969.574 kb on + strand at 2969.591 kb on + strand at 2969.612 kb on + strand at 2969.714 kb on + strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.723 kb on - strand at 2969.758 kb on - strand at 2969.764 kb on + strand at 2969.772 kb on - strand at 2969.778 kb on + strand at 2969.807 kb on + strand at 2969.863 kb on + strand, within CCNA_02812 at 2969.876 kb on - strand, within CCNA_02812 at 2969.937 kb on + strand, within CCNA_02812 at 2969.952 kb on + strand, within CCNA_02812 at 2969.952 kb on + strand, within CCNA_02812 at 2969.971 kb on + strand, within CCNA_02812 at 2969.983 kb on + strand, within CCNA_02812 at 2969.992 kb on - strand, within CCNA_02812 at 2970.025 kb on + strand, within CCNA_02812 at 2970.040 kb on - strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.064 kb on - strand, within CCNA_02812 at 2970.074 kb on - strand, within CCNA_02812 at 2970.122 kb on - strand at 2971.597 kb on - strand at 2971.606 kb on - strand at 2971.606 kb on - strand at 2971.606 kb on - strand at 2971.606 kb on - strand at 2971.638 kb on + strand at 2971.646 kb on - strand at 2971.669 kb on - strand at 2971.679 kb on - strand at 2971.734 kb on + strand at 2971.762 kb on - strand at 2971.766 kb on + strand, within CCNA_02815 at 2971.766 kb on + strand, within CCNA_02815 at 2971.766 kb on + strand, within CCNA_02815 at 2971.774 kb on - strand, within CCNA_02815 at 2971.774 kb on - strand, within CCNA_02815 at 2971.814 kb on + strand, within CCNA_02815 at 2971.819 kb on + strand, within CCNA_02815 at 2971.901 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.929 kb on + strand, within CCNA_02815 at 2971.929 kb on + strand, within CCNA_02815 at 2971.935 kb on - strand, within CCNA_02815 at 2971.937 kb on - strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.956 kb on + strand, within CCNA_02815 at 2971.959 kb on - strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.964 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.979 kb on - strand, within CCNA_02815 at 2972.018 kb on - strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.041 kb on - strand, within CCNA_02815 at 2972.046 kb on - strand, within CCNA_02815 at 2972.103 kb on - strand, within CCNA_02815 at 2972.107 kb on + strand, within CCNA_02815 at 2972.107 kb on + strand, within CCNA_02815 at 2972.134 kb on - strand, within CCNA_02815 at 2972.177 kb on + strand, within CCNA_02815 at 2972.193 kb on - strand, within CCNA_02815 at 2972.235 kb on + strand, within CCNA_02815 at 2972.240 kb on + strand, within CCNA_02815 at 2972.248 kb on - strand, within CCNA_02815 at 2972.253 kb on - strand, within CCNA_02815 at 2972.253 kb on - strand, within CCNA_02815 at 2972.284 kb on - strand, within CCNA_02815 at 2972.322 kb on - strand, within CCNA_02815 at 2972.332 kb on - strand, within CCNA_02815 at 2972.356 kb on - strand, within CCNA_02815 at 2972.358 kb on + strand, within CCNA_02815 at 2972.371 kb on - strand, within CCNA_02815 at 2972.407 kb on - strand, within CCNA_02815 at 2972.445 kb on - strand, within CCNA_02815 at 2972.461 kb on + strand, within CCNA_02815 at 2972.484 kb on - strand, within CCNA_02815 at 2972.502 kb on + strand, within CCNA_02815 at 2972.507 kb on + strand, within CCNA_02815 at 2972.507 kb on + strand, within CCNA_02815
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,969,537 + +0.8 2,969,559 + -0.0 2,969,574 + -0.0 2,969,591 + -0.1 2,969,612 + +0.1 2,969,714 + +0.5 2,969,722 - +0.2 2,969,722 - -1.0 2,969,722 - -0.8 2,969,723 - -1.9 2,969,758 - +0.2 2,969,764 + -0.3 2,969,772 - +0.0 2,969,778 + +0.9 2,969,807 + +0.2 2,969,863 + CCNA_02812 0.15 +0.0 2,969,876 - CCNA_02812 0.20 +0.6 2,969,937 + CCNA_02812 0.41 +0.2 2,969,952 + CCNA_02812 0.46 +0.5 2,969,952 + CCNA_02812 0.46 +1.5 2,969,971 + CCNA_02812 0.53 -0.5 2,969,983 + CCNA_02812 0.57 -2.0 2,969,992 - CCNA_02812 0.60 -0.8 2,970,025 + CCNA_02812 0.72 +0.6 2,970,040 - CCNA_02812 0.77 -1.2 2,970,056 + CCNA_02812 0.82 +0.2 2,970,056 + CCNA_02812 0.82 +0.1 2,970,064 - CCNA_02812 0.85 -0.3 2,970,074 - CCNA_02812 0.89 -0.5 2,970,122 - -2.3 2,971,597 - -1.8 2,971,606 - -1.6 2,971,606 - -0.3 2,971,606 - +0.1 2,971,606 - -0.3 2,971,638 + +0.2 2,971,646 - +0.4 2,971,669 - +0.4 2,971,679 - +0.9 2,971,734 + -0.2 2,971,762 - +1.6 2,971,766 + CCNA_02815 0.10 +0.6 2,971,766 + CCNA_02815 0.10 -2.8 2,971,766 + CCNA_02815 0.10 +0.9 2,971,774 - CCNA_02815 0.11 -0.5 2,971,774 - CCNA_02815 0.11 +0.1 2,971,814 + CCNA_02815 0.13 +0.4 2,971,819 + CCNA_02815 0.13 -1.0 2,971,901 + CCNA_02815 0.17 -0.2 2,971,912 + CCNA_02815 0.18 -0.4 2,971,912 + CCNA_02815 0.18 -0.0 2,971,912 + CCNA_02815 0.18 +0.8 2,971,912 + CCNA_02815 0.18 -1.4 2,971,912 + CCNA_02815 0.18 -0.4 2,971,929 + CCNA_02815 0.18 -0.3 2,971,929 + CCNA_02815 0.18 -1.5 2,971,935 - CCNA_02815 0.19 -0.2 2,971,937 - CCNA_02815 0.19 +0.1 2,971,951 + CCNA_02815 0.20 +1.3 2,971,951 + CCNA_02815 0.20 +1.1 2,971,951 + CCNA_02815 0.20 -0.7 2,971,951 + CCNA_02815 0.20 -1.1 2,971,951 + CCNA_02815 0.20 -1.7 2,971,956 + CCNA_02815 0.20 +0.4 2,971,959 - CCNA_02815 0.20 -0.8 2,971,961 + CCNA_02815 0.20 +1.0 2,971,961 + CCNA_02815 0.20 +0.7 2,971,961 + CCNA_02815 0.20 -0.0 2,971,964 - CCNA_02815 0.20 +0.1 2,971,969 - CCNA_02815 0.20 -0.2 2,971,969 - CCNA_02815 0.20 -1.0 2,971,969 - CCNA_02815 0.20 +0.2 2,971,979 - CCNA_02815 0.21 +0.2 2,972,018 - CCNA_02815 0.23 +0.6 2,972,033 + CCNA_02815 0.24 +0.2 2,972,033 + CCNA_02815 0.24 -2.5 2,972,033 + CCNA_02815 0.24 +0.2 2,972,033 + CCNA_02815 0.24 -0.3 2,972,033 + CCNA_02815 0.24 -0.1 2,972,041 - CCNA_02815 0.24 -0.7 2,972,046 - CCNA_02815 0.24 +0.3 2,972,103 - CCNA_02815 0.27 +1.2 2,972,107 + CCNA_02815 0.27 -1.1 2,972,107 + CCNA_02815 0.27 -0.1 2,972,134 - CCNA_02815 0.29 -0.5 2,972,177 + CCNA_02815 0.31 -0.5 2,972,193 - CCNA_02815 0.32 +1.1 2,972,235 + CCNA_02815 0.34 -0.3 2,972,240 + CCNA_02815 0.34 +0.2 2,972,248 - CCNA_02815 0.35 -1.0 2,972,253 - CCNA_02815 0.35 -0.4 2,972,253 - CCNA_02815 0.35 -0.6 2,972,284 - CCNA_02815 0.36 +0.8 2,972,322 - CCNA_02815 0.38 -0.6 2,972,332 - CCNA_02815 0.39 +0.1 2,972,356 - CCNA_02815 0.40 -0.0 2,972,358 + CCNA_02815 0.40 +1.4 2,972,371 - CCNA_02815 0.41 -0.2 2,972,407 - CCNA_02815 0.43 +0.0 2,972,445 - CCNA_02815 0.45 +0.3 2,972,461 + CCNA_02815 0.45 +0.8 2,972,484 - CCNA_02815 0.47 +0.5 2,972,502 + CCNA_02815 0.48 -1.8 2,972,507 + CCNA_02815 0.48 -0.2 2,972,507 + CCNA_02815 0.48 -0.9
Or see this region's nucleotide sequence