Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02711 and CCNA_02712 overlap by 4 nucleotides CCNA_02712 and CCNA_02713 overlap by 83 nucleotides CCNA_02713 and CCNA_02714 are separated by 117 nucleotides
CCNA_02711: CCNA_02711 - holdfast attachment protein hfaA, at 2,870,419 to 2,870,862
_02711
CCNA_02712: CCNA_02712 - holdfast attachment protein hfaB, at 2,870,859 to 2,871,872
_02712
CCNA_02713: CCNA_02713 - holdfast attachment protein hfaD, at 2,871,790 to 2,873,037
_02713
CCNA_02714: CCNA_02714 - ABC transporter ATP-binding protein uup, at 2,873,155 to 2,874,981
_02714
Position (kb)
2871
2872
2873
2874 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2870.792 kb on + strand, within CCNA_02711 at 2870.795 kb on - strand, within CCNA_02711 at 2870.800 kb on - strand, within CCNA_02711 at 2870.826 kb on - strand at 2870.836 kb on + strand at 2870.883 kb on + strand at 2870.891 kb on - strand at 2870.891 kb on - strand at 2870.891 kb on - strand at 2870.900 kb on - strand at 2870.966 kb on + strand, within CCNA_02712 at 2870.974 kb on - strand, within CCNA_02712 at 2870.984 kb on - strand, within CCNA_02712 at 2871.000 kb on + strand, within CCNA_02712 at 2871.002 kb on + strand, within CCNA_02712 at 2871.025 kb on - strand, within CCNA_02712 at 2871.106 kb on + strand, within CCNA_02712 at 2871.122 kb on - strand, within CCNA_02712 at 2871.162 kb on + strand, within CCNA_02712 at 2871.178 kb on + strand, within CCNA_02712 at 2871.186 kb on - strand, within CCNA_02712 at 2871.188 kb on + strand, within CCNA_02712 at 2871.195 kb on + strand, within CCNA_02712 at 2871.196 kb on - strand, within CCNA_02712 at 2871.259 kb on + strand, within CCNA_02712 at 2871.260 kb on + strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.329 kb on + strand, within CCNA_02712 at 2871.329 kb on + strand, within CCNA_02712 at 2871.329 kb on + strand, within CCNA_02712 at 2871.329 kb on + strand, within CCNA_02712 at 2871.337 kb on - strand, within CCNA_02712 at 2871.384 kb on + strand, within CCNA_02712 at 2871.416 kb on - strand, within CCNA_02712 at 2871.462 kb on + strand, within CCNA_02712 at 2871.463 kb on + strand, within CCNA_02712 at 2871.558 kb on - strand, within CCNA_02712 at 2871.644 kb on + strand, within CCNA_02712 at 2871.675 kb on + strand, within CCNA_02712 at 2871.712 kb on + strand, within CCNA_02712 at 2871.720 kb on - strand, within CCNA_02712 at 2871.720 kb on - strand, within CCNA_02712 at 2871.754 kb on + strand, within CCNA_02712 at 2871.765 kb on + strand, within CCNA_02712 at 2871.770 kb on + strand, within CCNA_02712 at 2871.775 kb on + strand at 2871.805 kb on - strand at 2871.835 kb on + strand at 2871.843 kb on - strand at 2871.845 kb on - strand at 2871.853 kb on - strand at 2871.860 kb on + strand at 2871.866 kb on + strand at 2871.874 kb on - strand at 2871.874 kb on - strand at 2871.903 kb on - strand at 2871.942 kb on - strand, within CCNA_02713 at 2871.957 kb on - strand, within CCNA_02713 at 2871.958 kb on + strand, within CCNA_02713 at 2871.958 kb on + strand, within CCNA_02713 at 2871.966 kb on - strand, within CCNA_02713 at 2871.996 kb on - strand, within CCNA_02713 at 2872.001 kb on - strand, within CCNA_02713 at 2872.001 kb on - strand, within CCNA_02713 at 2872.012 kb on + strand, within CCNA_02713 at 2872.040 kb on + strand, within CCNA_02713 at 2872.066 kb on + strand, within CCNA_02713 at 2872.073 kb on + strand, within CCNA_02713 at 2872.073 kb on + strand, within CCNA_02713 at 2872.100 kb on + strand, within CCNA_02713 at 2872.159 kb on + strand, within CCNA_02713 at 2872.174 kb on + strand, within CCNA_02713 at 2872.182 kb on - strand, within CCNA_02713 at 2872.182 kb on - strand, within CCNA_02713 at 2872.197 kb on - strand, within CCNA_02713 at 2872.235 kb on - strand, within CCNA_02713 at 2872.272 kb on - strand, within CCNA_02713 at 2872.297 kb on - strand, within CCNA_02713 at 2872.300 kb on + strand, within CCNA_02713 at 2872.308 kb on - strand, within CCNA_02713 at 2872.412 kb on + strand, within CCNA_02713 at 2872.453 kb on - strand, within CCNA_02713 at 2872.462 kb on - strand, within CCNA_02713 at 2872.472 kb on + strand, within CCNA_02713 at 2872.477 kb on + strand, within CCNA_02713 at 2872.477 kb on + strand, within CCNA_02713 at 2872.480 kb on - strand, within CCNA_02713 at 2872.482 kb on + strand, within CCNA_02713 at 2872.482 kb on + strand, within CCNA_02713 at 2872.487 kb on + strand, within CCNA_02713 at 2872.490 kb on - strand, within CCNA_02713 at 2872.490 kb on - strand, within CCNA_02713 at 2872.501 kb on + strand, within CCNA_02713 at 2872.501 kb on + strand, within CCNA_02713 at 2872.501 kb on + strand, within CCNA_02713 at 2872.623 kb on + strand, within CCNA_02713 at 2872.623 kb on + strand, within CCNA_02713 at 2872.631 kb on + strand, within CCNA_02713 at 2872.631 kb on + strand, within CCNA_02713 at 2872.631 kb on - strand, within CCNA_02713 at 2872.639 kb on - strand, within CCNA_02713 at 2872.650 kb on + strand, within CCNA_02713 at 2872.653 kb on - strand, within CCNA_02713 at 2872.658 kb on - strand, within CCNA_02713 at 2872.661 kb on + strand, within CCNA_02713 at 2872.669 kb on - strand, within CCNA_02713 at 2872.679 kb on - strand, within CCNA_02713 at 2872.681 kb on + strand, within CCNA_02713 at 2872.681 kb on + strand, within CCNA_02713 at 2872.686 kb on + strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.692 kb on + strand, within CCNA_02713 at 2872.694 kb on - strand, within CCNA_02713 at 2872.702 kb on + strand, within CCNA_02713 at 2872.710 kb on - strand, within CCNA_02713 at 2872.719 kb on + strand, within CCNA_02713 at 2872.719 kb on + strand, within CCNA_02713 at 2872.727 kb on - strand, within CCNA_02713 at 2872.727 kb on - strand, within CCNA_02713 at 2872.807 kb on + strand, within CCNA_02713 at 2872.813 kb on + strand, within CCNA_02713 at 2872.853 kb on - strand, within CCNA_02713 at 2872.853 kb on - strand, within CCNA_02713 at 2872.855 kb on - strand, within CCNA_02713 at 2872.855 kb on - strand, within CCNA_02713 at 2872.861 kb on + strand, within CCNA_02713 at 2872.865 kb on + strand, within CCNA_02713 at 2872.894 kb on + strand, within CCNA_02713 at 2872.894 kb on + strand, within CCNA_02713 at 2872.900 kb on + strand, within CCNA_02713 at 2872.914 kb on + strand at 2872.957 kb on - strand at 2872.971 kb on + strand at 2873.039 kb on - strand at 2873.079 kb on + strand at 2873.097 kb on + strand at 2873.097 kb on + strand at 2873.097 kb on + strand at 2873.105 kb on - strand at 2873.106 kb on - strand at 2873.130 kb on + strand at 2873.141 kb on + strand at 2873.151 kb on - strand at 2873.152 kb on + strand at 2873.152 kb on + strand at 2873.152 kb on + strand at 2873.160 kb on - strand at 2873.160 kb on - strand at 2873.160 kb on - strand at 2873.160 kb on - strand at 2873.160 kb on - strand at 2873.176 kb on + strand at 2873.234 kb on + strand at 2873.234 kb on + strand at 2873.242 kb on - strand at 2873.359 kb on + strand, within CCNA_02714 at 2873.359 kb on + strand, within CCNA_02714 at 2873.367 kb on - strand, within CCNA_02714 at 2873.367 kb on - strand, within CCNA_02714 at 2873.367 kb on - strand, within CCNA_02714 at 2873.369 kb on + strand, within CCNA_02714 at 2873.374 kb on + strand, within CCNA_02714 at 2873.377 kb on - strand, within CCNA_02714 at 2873.419 kb on + strand, within CCNA_02714 at 2873.419 kb on + strand, within CCNA_02714 at 2873.425 kb on - strand, within CCNA_02714 at 2873.427 kb on - strand, within CCNA_02714 at 2873.427 kb on - strand, within CCNA_02714 at 2873.429 kb on + strand, within CCNA_02714 at 2873.446 kb on + strand, within CCNA_02714 at 2873.454 kb on - strand, within CCNA_02714 at 2873.454 kb on - strand, within CCNA_02714 at 2873.454 kb on - strand, within CCNA_02714 at 2873.459 kb on - strand, within CCNA_02714 at 2873.459 kb on - strand, within CCNA_02714 at 2873.504 kb on + strand, within CCNA_02714 at 2873.542 kb on + strand, within CCNA_02714 at 2873.542 kb on + strand, within CCNA_02714 at 2873.550 kb on - strand, within CCNA_02714 at 2873.550 kb on - strand, within CCNA_02714 at 2873.649 kb on + strand, within CCNA_02714 at 2873.657 kb on - strand, within CCNA_02714 at 2873.663 kb on + strand, within CCNA_02714 at 2873.670 kb on - strand, within CCNA_02714 at 2873.670 kb on - strand, within CCNA_02714 at 2873.697 kb on - strand, within CCNA_02714 at 2873.697 kb on - strand, within CCNA_02714 at 2873.720 kb on + strand, within CCNA_02714 at 2873.722 kb on - strand, within CCNA_02714 at 2873.722 kb on - strand, within CCNA_02714 at 2873.730 kb on + strand, within CCNA_02714 at 2873.748 kb on + strand, within CCNA_02714 at 2873.757 kb on - strand, within CCNA_02714 at 2873.762 kb on - strand, within CCNA_02714 at 2873.777 kb on + strand, within CCNA_02714 at 2873.780 kb on - strand, within CCNA_02714 at 2873.830 kb on + strand, within CCNA_02714 at 2873.864 kb on - strand, within CCNA_02714 at 2873.864 kb on - strand, within CCNA_02714 at 2873.874 kb on - strand, within CCNA_02714 at 2873.882 kb on + strand, within CCNA_02714 at 2873.950 kb on + strand, within CCNA_02714 at 2873.952 kb on + strand, within CCNA_02714 at 2873.971 kb on + strand, within CCNA_02714 at 2873.971 kb on + strand, within CCNA_02714 at 2873.971 kb on + strand, within CCNA_02714 at 2873.979 kb on - strand, within CCNA_02714 at 2874.015 kb on - strand, within CCNA_02714
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,870,792 + CCNA_02711 0.84 +0.0 2,870,795 - CCNA_02711 0.85 +0.7 2,870,800 - CCNA_02711 0.86 +0.4 2,870,826 - -1.2 2,870,836 + -0.2 2,870,883 + -0.2 2,870,891 - -0.3 2,870,891 - -1.1 2,870,891 - -0.8 2,870,900 - -0.6 2,870,966 + CCNA_02712 0.11 -0.4 2,870,974 - CCNA_02712 0.11 -1.2 2,870,984 - CCNA_02712 0.12 +0.8 2,871,000 + CCNA_02712 0.14 +1.5 2,871,002 + CCNA_02712 0.14 +0.3 2,871,025 - CCNA_02712 0.16 +2.2 2,871,106 + CCNA_02712 0.24 +0.2 2,871,122 - CCNA_02712 0.26 -0.7 2,871,162 + CCNA_02712 0.30 +0.6 2,871,178 + CCNA_02712 0.31 +0.1 2,871,186 - CCNA_02712 0.32 -1.3 2,871,188 + CCNA_02712 0.32 +0.5 2,871,195 + CCNA_02712 0.33 -0.6 2,871,196 - CCNA_02712 0.33 -2.4 2,871,259 + CCNA_02712 0.39 +0.8 2,871,260 + CCNA_02712 0.40 -1.1 2,871,268 - CCNA_02712 0.40 -0.7 2,871,268 - CCNA_02712 0.40 -0.3 2,871,268 - CCNA_02712 0.40 -1.1 2,871,268 - CCNA_02712 0.40 -1.3 2,871,268 - CCNA_02712 0.40 -0.9 2,871,329 + CCNA_02712 0.46 +0.6 2,871,329 + CCNA_02712 0.46 +1.3 2,871,329 + CCNA_02712 0.46 +1.0 2,871,329 + CCNA_02712 0.46 +0.1 2,871,337 - CCNA_02712 0.47 +0.7 2,871,384 + CCNA_02712 0.52 +0.1 2,871,416 - CCNA_02712 0.55 +0.2 2,871,462 + CCNA_02712 0.59 +0.1 2,871,463 + CCNA_02712 0.60 -1.2 2,871,558 - CCNA_02712 0.69 -2.3 2,871,644 + CCNA_02712 0.77 +2.3 2,871,675 + CCNA_02712 0.80 -0.3 2,871,712 + CCNA_02712 0.84 +0.3 2,871,720 - CCNA_02712 0.85 -0.6 2,871,720 - CCNA_02712 0.85 -0.1 2,871,754 + CCNA_02712 0.88 +0.0 2,871,765 + CCNA_02712 0.89 +1.9 2,871,770 + CCNA_02712 0.90 -0.1 2,871,775 + +0.4 2,871,805 - -0.7 2,871,835 + -0.1 2,871,843 - -0.2 2,871,845 - +0.3 2,871,853 - -2.6 2,871,860 + +0.1 2,871,866 + +0.4 2,871,874 - -0.9 2,871,874 - -1.4 2,871,903 - -0.6 2,871,942 - CCNA_02713 0.12 -1.9 2,871,957 - CCNA_02713 0.13 +0.2 2,871,958 + CCNA_02713 0.13 -0.0 2,871,958 + CCNA_02713 0.13 -0.2 2,871,966 - CCNA_02713 0.14 +1.1 2,871,996 - CCNA_02713 0.17 -1.0 2,872,001 - CCNA_02713 0.17 +0.7 2,872,001 - CCNA_02713 0.17 +0.9 2,872,012 + CCNA_02713 0.18 +0.5 2,872,040 + CCNA_02713 0.20 +0.7 2,872,066 + CCNA_02713 0.22 -0.2 2,872,073 + CCNA_02713 0.23 +0.6 2,872,073 + CCNA_02713 0.23 +0.1 2,872,100 + CCNA_02713 0.25 -0.5 2,872,159 + CCNA_02713 0.30 +0.1 2,872,174 + CCNA_02713 0.31 -0.2 2,872,182 - CCNA_02713 0.31 -0.4 2,872,182 - CCNA_02713 0.31 -0.3 2,872,197 - CCNA_02713 0.33 -1.1 2,872,235 - CCNA_02713 0.36 +0.6 2,872,272 - CCNA_02713 0.39 -0.3 2,872,297 - CCNA_02713 0.41 +0.6 2,872,300 + CCNA_02713 0.41 +0.4 2,872,308 - CCNA_02713 0.42 -0.6 2,872,412 + CCNA_02713 0.50 +0.2 2,872,453 - CCNA_02713 0.53 +0.9 2,872,462 - CCNA_02713 0.54 +0.1 2,872,472 + CCNA_02713 0.55 +0.2 2,872,477 + CCNA_02713 0.55 -0.0 2,872,477 + CCNA_02713 0.55 +0.5 2,872,480 - CCNA_02713 0.55 +0.2 2,872,482 + CCNA_02713 0.55 +0.0 2,872,482 + CCNA_02713 0.55 -0.2 2,872,487 + CCNA_02713 0.56 +0.3 2,872,490 - CCNA_02713 0.56 -0.1 2,872,490 - CCNA_02713 0.56 -0.4 2,872,501 + CCNA_02713 0.57 -0.3 2,872,501 + CCNA_02713 0.57 +0.3 2,872,501 + CCNA_02713 0.57 +0.6 2,872,623 + CCNA_02713 0.67 -0.6 2,872,623 + CCNA_02713 0.67 +1.0 2,872,631 + CCNA_02713 0.67 +0.5 2,872,631 + CCNA_02713 0.67 +0.0 2,872,631 - CCNA_02713 0.67 -0.4 2,872,639 - CCNA_02713 0.68 +0.7 2,872,650 + CCNA_02713 0.69 +0.3 2,872,653 - CCNA_02713 0.69 +0.2 2,872,658 - CCNA_02713 0.70 -0.7 2,872,661 + CCNA_02713 0.70 -0.4 2,872,669 - CCNA_02713 0.70 +0.1 2,872,679 - CCNA_02713 0.71 -1.1 2,872,681 + CCNA_02713 0.71 +0.1 2,872,681 + CCNA_02713 0.71 +0.5 2,872,686 + CCNA_02713 0.72 +0.4 2,872,689 - CCNA_02713 0.72 +0.4 2,872,689 - CCNA_02713 0.72 -0.3 2,872,689 - CCNA_02713 0.72 +0.4 2,872,689 - CCNA_02713 0.72 -0.3 2,872,689 - CCNA_02713 0.72 -0.2 2,872,692 + CCNA_02713 0.72 +0.2 2,872,694 - CCNA_02713 0.72 -0.1 2,872,702 + CCNA_02713 0.73 -0.3 2,872,710 - CCNA_02713 0.74 -1.9 2,872,719 + CCNA_02713 0.74 -0.1 2,872,719 + CCNA_02713 0.74 +0.1 2,872,727 - CCNA_02713 0.75 -2.2 2,872,727 - CCNA_02713 0.75 +0.7 2,872,807 + CCNA_02713 0.81 +1.2 2,872,813 + CCNA_02713 0.82 +0.3 2,872,853 - CCNA_02713 0.85 -0.4 2,872,853 - CCNA_02713 0.85 +0.4 2,872,855 - CCNA_02713 0.85 +0.7 2,872,855 - CCNA_02713 0.85 +1.7 2,872,861 + CCNA_02713 0.86 -0.2 2,872,865 + CCNA_02713 0.86 +0.3 2,872,894 + CCNA_02713 0.88 -0.0 2,872,894 + CCNA_02713 0.88 +0.1 2,872,900 + CCNA_02713 0.89 +0.3 2,872,914 + +0.2 2,872,957 - +1.3 2,872,971 + +0.9 2,873,039 - +0.1 2,873,079 + -0.2 2,873,097 + +0.7 2,873,097 + +0.2 2,873,097 + +0.2 2,873,105 - +0.9 2,873,106 - -0.2 2,873,130 + -0.3 2,873,141 + +0.3 2,873,151 - -2.7 2,873,152 + +0.0 2,873,152 + +0.2 2,873,152 + +0.1 2,873,160 - -0.5 2,873,160 - +0.3 2,873,160 - +0.3 2,873,160 - -0.6 2,873,160 - -0.8 2,873,176 + +2.0 2,873,234 + -0.2 2,873,234 + +0.5 2,873,242 - +0.4 2,873,359 + CCNA_02714 0.11 +0.5 2,873,359 + CCNA_02714 0.11 -0.7 2,873,367 - CCNA_02714 0.12 +0.1 2,873,367 - CCNA_02714 0.12 +0.0 2,873,367 - CCNA_02714 0.12 +0.2 2,873,369 + CCNA_02714 0.12 -1.2 2,873,374 + CCNA_02714 0.12 -0.1 2,873,377 - CCNA_02714 0.12 -1.1 2,873,419 + CCNA_02714 0.14 +0.5 2,873,419 + CCNA_02714 0.14 -0.2 2,873,425 - CCNA_02714 0.15 -1.3 2,873,427 - CCNA_02714 0.15 -0.3 2,873,427 - CCNA_02714 0.15 -1.7 2,873,429 + CCNA_02714 0.15 +0.5 2,873,446 + CCNA_02714 0.16 +0.2 2,873,454 - CCNA_02714 0.16 -0.3 2,873,454 - CCNA_02714 0.16 -1.1 2,873,454 - CCNA_02714 0.16 +0.6 2,873,459 - CCNA_02714 0.17 -0.1 2,873,459 - CCNA_02714 0.17 +0.7 2,873,504 + CCNA_02714 0.19 +0.2 2,873,542 + CCNA_02714 0.21 +0.2 2,873,542 + CCNA_02714 0.21 +0.2 2,873,550 - CCNA_02714 0.22 +1.0 2,873,550 - CCNA_02714 0.22 -0.3 2,873,649 + CCNA_02714 0.27 +0.9 2,873,657 - CCNA_02714 0.27 +0.9 2,873,663 + CCNA_02714 0.28 +0.8 2,873,670 - CCNA_02714 0.28 -0.8 2,873,670 - CCNA_02714 0.28 +0.4 2,873,697 - CCNA_02714 0.30 -0.2 2,873,697 - CCNA_02714 0.30 -1.0 2,873,720 + CCNA_02714 0.31 +0.3 2,873,722 - CCNA_02714 0.31 +0.2 2,873,722 - CCNA_02714 0.31 -0.1 2,873,730 + CCNA_02714 0.31 +0.8 2,873,748 + CCNA_02714 0.32 +1.2 2,873,757 - CCNA_02714 0.33 +0.2 2,873,762 - CCNA_02714 0.33 +0.4 2,873,777 + CCNA_02714 0.34 -0.0 2,873,780 - CCNA_02714 0.34 -1.3 2,873,830 + CCNA_02714 0.37 -1.0 2,873,864 - CCNA_02714 0.39 +0.4 2,873,864 - CCNA_02714 0.39 +0.4 2,873,874 - CCNA_02714 0.39 -0.3 2,873,882 + CCNA_02714 0.40 -1.8 2,873,950 + CCNA_02714 0.44 +0.1 2,873,952 + CCNA_02714 0.44 -1.0 2,873,971 + CCNA_02714 0.45 -0.0 2,873,971 + CCNA_02714 0.45 -0.0 2,873,971 + CCNA_02714 0.45 +0.4 2,873,979 - CCNA_02714 0.45 -0.2 2,874,015 - CCNA_02714 0.47 +0.0
Or see this region's nucleotide sequence