Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02698 and CCNA_02699 are separated by 114 nucleotides CCNA_02699 and CCNA_02700 overlap by 14 nucleotides
CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460
_02698
CCNA_02699: CCNA_02699 - guanine deaminase, at 2,852,575 to 2,853,861
_02699
CCNA_02700: CCNA_02700 - xanthine dehydrogenase accessory protein XdhC, at 2,853,848 to 2,854,864
_02700
Position (kb)
2852
2853
2854 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2851.578 kb on + strand at 2851.600 kb on + strand, within CCNA_02698 at 2851.644 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.719 kb on + strand, within CCNA_02698 at 2851.738 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.760 kb on + strand, within CCNA_02698 at 2851.763 kb on - strand, within CCNA_02698 at 2851.774 kb on + strand, within CCNA_02698 at 2851.823 kb on - strand, within CCNA_02698 at 2851.845 kb on + strand, within CCNA_02698 at 2851.850 kb on + strand, within CCNA_02698 at 2851.857 kb on + strand, within CCNA_02698 at 2851.868 kb on - strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.877 kb on + strand, within CCNA_02698 at 2851.881 kb on - strand, within CCNA_02698 at 2851.896 kb on - strand, within CCNA_02698 at 2851.904 kb on - strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.983 kb on + strand, within CCNA_02698 at 2851.985 kb on - strand, within CCNA_02698 at 2852.016 kb on - strand, within CCNA_02698 at 2852.027 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.045 kb on - strand, within CCNA_02698 at 2852.051 kb on + strand, within CCNA_02698 at 2852.059 kb on - strand, within CCNA_02698 at 2852.072 kb on + strand, within CCNA_02698 at 2852.166 kb on + strand, within CCNA_02698 at 2852.166 kb on + strand, within CCNA_02698 at 2852.192 kb on - strand, within CCNA_02698 at 2852.211 kb on + strand, within CCNA_02698 at 2852.320 kb on - strand, within CCNA_02698 at 2852.324 kb on - strand, within CCNA_02698 at 2852.342 kb on - strand, within CCNA_02698 at 2852.342 kb on - strand, within CCNA_02698 at 2852.439 kb on - strand at 2852.500 kb on + strand at 2852.500 kb on + strand at 2852.500 kb on + strand at 2852.505 kb on + strand at 2852.511 kb on + strand at 2852.549 kb on - strand at 2853.055 kb on - strand, within CCNA_02699 at 2853.119 kb on - strand, within CCNA_02699 at 2853.121 kb on + strand, within CCNA_02699 at 2853.853 kb on + strand at 2853.889 kb on - strand at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2854.052 kb on - strand, within CCNA_02700 at 2854.108 kb on + strand, within CCNA_02700 at 2854.114 kb on - strand, within CCNA_02700 at 2854.114 kb on - strand, within CCNA_02700 at 2854.136 kb on + strand, within CCNA_02700 at 2854.137 kb on + strand, within CCNA_02700 at 2854.141 kb on + strand, within CCNA_02700 at 2854.144 kb on - strand, within CCNA_02700 at 2854.144 kb on - strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.149 kb on + strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.177 kb on - strand, within CCNA_02700 at 2854.293 kb on + strand, within CCNA_02700 at 2854.368 kb on - strand, within CCNA_02700 at 2854.420 kb on + strand, within CCNA_02700 at 2854.466 kb on + strand, within CCNA_02700 at 2854.474 kb on + strand, within CCNA_02700 at 2854.575 kb on + strand, within CCNA_02700 at 2854.596 kb on + strand, within CCNA_02700 at 2854.807 kb on - strand at 2854.807 kb on - strand at 2854.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,851,578 + +0.3 2,851,600 + CCNA_02698 0.11 -0.1 2,851,644 + CCNA_02698 0.16 +0.3 2,851,678 + CCNA_02698 0.19 -0.3 2,851,678 + CCNA_02698 0.19 +2.4 2,851,678 + CCNA_02698 0.19 -0.1 2,851,719 + CCNA_02698 0.24 +0.4 2,851,738 - CCNA_02698 0.26 -0.4 2,851,758 - CCNA_02698 0.28 -0.0 2,851,758 - CCNA_02698 0.28 -1.8 2,851,760 + CCNA_02698 0.28 +1.2 2,851,763 - CCNA_02698 0.28 +0.2 2,851,774 + CCNA_02698 0.29 +0.2 2,851,823 - CCNA_02698 0.34 -0.6 2,851,845 + CCNA_02698 0.37 +0.1 2,851,850 + CCNA_02698 0.37 +0.2 2,851,857 + CCNA_02698 0.38 -0.3 2,851,868 - CCNA_02698 0.39 -1.3 2,851,873 + CCNA_02698 0.40 +0.1 2,851,873 + CCNA_02698 0.40 +0.5 2,851,877 + CCNA_02698 0.40 +0.2 2,851,881 - CCNA_02698 0.40 -0.2 2,851,896 - CCNA_02698 0.42 -0.2 2,851,904 - CCNA_02698 0.43 +1.1 2,851,926 + CCNA_02698 0.45 +0.5 2,851,926 + CCNA_02698 0.45 +0.4 2,851,934 - CCNA_02698 0.46 +0.0 2,851,934 - CCNA_02698 0.46 -0.3 2,851,983 + CCNA_02698 0.51 +0.3 2,851,985 - CCNA_02698 0.51 +0.4 2,852,016 - CCNA_02698 0.54 +0.6 2,852,027 + CCNA_02698 0.55 +0.1 2,852,037 + CCNA_02698 0.56 +0.3 2,852,037 + CCNA_02698 0.56 +0.1 2,852,037 + CCNA_02698 0.56 +0.1 2,852,045 - CCNA_02698 0.57 +1.7 2,852,051 + CCNA_02698 0.58 -0.7 2,852,059 - CCNA_02698 0.59 -0.8 2,852,072 + CCNA_02698 0.60 +0.2 2,852,166 + CCNA_02698 0.70 -0.4 2,852,166 + CCNA_02698 0.70 -0.1 2,852,192 - CCNA_02698 0.72 -0.9 2,852,211 + CCNA_02698 0.74 -0.2 2,852,320 - CCNA_02698 0.85 -0.1 2,852,324 - CCNA_02698 0.86 -0.5 2,852,342 - CCNA_02698 0.88 -0.1 2,852,342 - CCNA_02698 0.88 -0.4 2,852,439 - -0.7 2,852,500 + +0.4 2,852,500 + +0.7 2,852,500 + +0.6 2,852,505 + +0.3 2,852,511 + +0.3 2,852,549 - +0.5 2,853,055 - CCNA_02699 0.37 +1.4 2,853,119 - CCNA_02699 0.42 +0.3 2,853,121 + CCNA_02699 0.42 +0.7 2,853,853 + -0.8 2,853,889 - +0.5 2,853,980 + CCNA_02700 0.13 +0.9 2,853,980 + CCNA_02700 0.13 -0.9 2,853,980 + CCNA_02700 0.13 +0.4 2,853,980 + CCNA_02700 0.13 -0.6 2,853,980 + CCNA_02700 0.13 -1.0 2,853,988 - CCNA_02700 0.14 -0.3 2,853,988 - CCNA_02700 0.14 +0.5 2,853,988 - CCNA_02700 0.14 +0.0 2,853,988 - CCNA_02700 0.14 +0.0 2,854,052 - CCNA_02700 0.20 +1.2 2,854,108 + CCNA_02700 0.26 +0.6 2,854,114 - CCNA_02700 0.26 +0.2 2,854,114 - CCNA_02700 0.26 +0.7 2,854,136 + CCNA_02700 0.28 -0.1 2,854,137 + CCNA_02700 0.28 -0.4 2,854,141 + CCNA_02700 0.29 -1.1 2,854,144 - CCNA_02700 0.29 +0.3 2,854,144 - CCNA_02700 0.29 +0.7 2,854,147 + CCNA_02700 0.29 +0.7 2,854,147 + CCNA_02700 0.29 -1.8 2,854,147 + CCNA_02700 0.29 -0.9 2,854,147 + CCNA_02700 0.29 -0.3 2,854,149 + CCNA_02700 0.30 -0.1 2,854,155 - CCNA_02700 0.30 -0.2 2,854,155 - CCNA_02700 0.30 +0.4 2,854,177 - CCNA_02700 0.32 -0.6 2,854,293 + CCNA_02700 0.44 +0.3 2,854,368 - CCNA_02700 0.51 +0.2 2,854,420 + CCNA_02700 0.56 +0.7 2,854,466 + CCNA_02700 0.61 +1.7 2,854,474 + CCNA_02700 0.62 -0.3 2,854,575 + CCNA_02700 0.71 -0.8 2,854,596 + CCNA_02700 0.74 -0.6 2,854,807 - +0.0 2,854,807 - +0.2 2,854,832 + +0.1
Or see this region's nucleotide sequence