Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_R0056 and CCNA_02391 are separated by 190 nucleotides CCNA_02391 and CCNA_02392 are separated by 9 nucleotides CCNA_02392 and CCNA_03898 are separated by 27 nucleotides CCNA_03898 and CCNA_03881 are separated by 39 nucleotides CCNA_03881 and CCNA_02394 are separated by 39 nucleotides
CCNA_R0056: CCNA_R0056 - tRNA-Val, at 2,535,064 to 2,535,138
_R0056
CCNA_02391: CCNA_02391 - oxidoreductase, at 2,535,329 to 2,536,108
_02391
CCNA_02392: CCNA_02392 - SnoaL-like domain protein, at 2,536,118 to 2,536,504
_02392
CCNA_03898: CCNA_03898 - NTF2 superfamily protein, at 2,536,532 to 2,536,969
_03898
CCNA_03881: CCNA_03881 - beta-lactamse domain-containing protein, at 2,537,009 to 2,537,350
_03881
CCNA_02394: CCNA_02394 - glutathione S-transferase, at 2,537,390 to 2,538,052
_02394
Position (kb)
2536
2537 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2535.161 kb on + strand at 2535.169 kb on - strand at 2535.214 kb on + strand at 2535.214 kb on + strand at 2535.222 kb on - strand at 2535.222 kb on - strand at 2535.222 kb on - strand at 2535.323 kb on + strand at 2535.331 kb on - strand at 2535.335 kb on - strand at 2535.353 kb on + strand at 2535.361 kb on + strand at 2535.364 kb on - strand at 2535.371 kb on + strand at 2535.453 kb on - strand, within CCNA_02391 at 2535.453 kb on - strand, within CCNA_02391 at 2535.453 kb on - strand, within CCNA_02391 at 2535.484 kb on + strand, within CCNA_02391 at 2535.484 kb on + strand, within CCNA_02391 at 2535.492 kb on - strand, within CCNA_02391 at 2535.568 kb on + strand, within CCNA_02391 at 2535.568 kb on + strand, within CCNA_02391 at 2535.570 kb on + strand, within CCNA_02391 at 2535.578 kb on - strand, within CCNA_02391 at 2535.615 kb on + strand, within CCNA_02391 at 2535.625 kb on + strand, within CCNA_02391 at 2535.637 kb on + strand, within CCNA_02391 at 2535.637 kb on + strand, within CCNA_02391 at 2535.708 kb on + strand, within CCNA_02391 at 2535.713 kb on + strand, within CCNA_02391 at 2535.713 kb on + strand, within CCNA_02391 at 2535.716 kb on - strand, within CCNA_02391 at 2535.726 kb on - strand, within CCNA_02391 at 2535.742 kb on + strand, within CCNA_02391 at 2535.764 kb on + strand, within CCNA_02391 at 2535.791 kb on - strand, within CCNA_02391 at 2535.862 kb on - strand, within CCNA_02391 at 2535.869 kb on - strand, within CCNA_02391 at 2535.870 kb on + strand, within CCNA_02391 at 2535.893 kb on + strand, within CCNA_02391 at 2535.932 kb on - strand, within CCNA_02391 at 2535.933 kb on - strand, within CCNA_02391 at 2535.950 kb on + strand, within CCNA_02391 at 2535.950 kb on + strand, within CCNA_02391 at 2535.959 kb on + strand, within CCNA_02391 at 2535.963 kb on - strand, within CCNA_02391 at 2535.978 kb on - strand, within CCNA_02391 at 2535.996 kb on + strand, within CCNA_02391 at 2536.011 kb on - strand, within CCNA_02391 at 2536.026 kb on - strand, within CCNA_02391 at 2536.028 kb on + strand, within CCNA_02391 at 2536.028 kb on + strand, within CCNA_02391 at 2536.036 kb on - strand at 2536.036 kb on - strand at 2536.049 kb on + strand at 2536.050 kb on + strand at 2536.090 kb on + strand at 2536.128 kb on - strand at 2536.153 kb on - strand at 2536.179 kb on - strand, within CCNA_02392 at 2536.203 kb on - strand, within CCNA_02392 at 2536.230 kb on + strand, within CCNA_02392 at 2536.238 kb on - strand, within CCNA_02392 at 2536.368 kb on + strand, within CCNA_02392 at 2536.368 kb on + strand, within CCNA_02392 at 2536.369 kb on - strand, within CCNA_02392 at 2536.386 kb on - strand, within CCNA_02392 at 2536.403 kb on - strand, within CCNA_02392 at 2536.405 kb on + strand, within CCNA_02392 at 2536.432 kb on + strand, within CCNA_02392 at 2536.466 kb on - strand at 2536.511 kb on - strand at 2536.569 kb on - strand at 2536.666 kb on - strand, within CCNA_03898 at 2536.783 kb on + strand, within CCNA_03898 at 2536.811 kb on + strand, within CCNA_03898 at 2536.811 kb on + strand, within CCNA_03898 at 2536.811 kb on + strand, within CCNA_03898 at 2536.811 kb on + strand, within CCNA_03898 at 2536.811 kb on + strand, within CCNA_03898 at 2536.811 kb on + strand, within CCNA_03898 at 2536.819 kb on - strand, within CCNA_03898 at 2536.819 kb on - strand, within CCNA_03898 at 2536.819 kb on - strand, within CCNA_03898 at 2536.837 kb on + strand, within CCNA_03898 at 2536.847 kb on + strand, within CCNA_03898 at 2536.867 kb on + strand, within CCNA_03898 at 2536.872 kb on + strand, within CCNA_03898 at 2536.872 kb on + strand, within CCNA_03898 at 2536.875 kb on - strand, within CCNA_03898 at 2536.875 kb on - strand, within CCNA_03898 at 2536.880 kb on - strand, within CCNA_03898 at 2536.927 kb on + strand at 2536.927 kb on + strand at 2536.927 kb on + strand at 2536.928 kb on + strand at 2536.953 kb on + strand at 2536.999 kb on + strand at 2536.999 kb on + strand at 2537.000 kb on - strand at 2537.007 kb on - strand at 2537.028 kb on + strand at 2537.028 kb on + strand at 2537.036 kb on - strand at 2537.045 kb on + strand, within CCNA_03881 at 2537.072 kb on + strand, within CCNA_03881 at 2537.131 kb on - strand, within CCNA_03881 at 2537.150 kb on + strand, within CCNA_03881 at 2537.160 kb on - strand, within CCNA_03881 at 2537.222 kb on + strand, within CCNA_03881 at 2537.231 kb on + strand, within CCNA_03881 at 2537.234 kb on - strand, within CCNA_03881 at 2537.234 kb on - strand, within CCNA_03881 at 2537.252 kb on + strand, within CCNA_03881 at 2537.257 kb on + strand, within CCNA_03881 at 2537.264 kb on + strand, within CCNA_03881 at 2537.272 kb on - strand, within CCNA_03881 at 2537.305 kb on + strand, within CCNA_03881 at 2537.322 kb on + strand at 2537.330 kb on - strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.345 kb on + strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.353 kb on - strand at 2537.375 kb on + strand at 2537.387 kb on + strand at 2537.387 kb on + strand at 2537.422 kb on - strand at 2537.483 kb on + strand, within CCNA_02394
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,535,161 + +0.8 2,535,169 - -0.3 2,535,214 + -0.2 2,535,214 + -0.5 2,535,222 - +0.5 2,535,222 - -0.1 2,535,222 - +0.1 2,535,323 + +0.3 2,535,331 - +1.5 2,535,335 - -0.9 2,535,353 + -0.4 2,535,361 + +0.1 2,535,364 - -0.5 2,535,371 + +0.1 2,535,453 - CCNA_02391 0.16 +0.9 2,535,453 - CCNA_02391 0.16 +0.0 2,535,453 - CCNA_02391 0.16 -1.5 2,535,484 + CCNA_02391 0.20 -0.3 2,535,484 + CCNA_02391 0.20 -0.1 2,535,492 - CCNA_02391 0.21 +0.1 2,535,568 + CCNA_02391 0.31 -3.0 2,535,568 + CCNA_02391 0.31 -0.2 2,535,570 + CCNA_02391 0.31 +1.9 2,535,578 - CCNA_02391 0.32 +0.4 2,535,615 + CCNA_02391 0.37 +0.0 2,535,625 + CCNA_02391 0.38 -1.8 2,535,637 + CCNA_02391 0.39 +0.3 2,535,637 + CCNA_02391 0.39 -2.5 2,535,708 + CCNA_02391 0.49 -1.6 2,535,713 + CCNA_02391 0.49 -1.9 2,535,713 + CCNA_02391 0.49 +0.7 2,535,716 - CCNA_02391 0.50 +0.9 2,535,726 - CCNA_02391 0.51 -0.2 2,535,742 + CCNA_02391 0.53 -0.2 2,535,764 + CCNA_02391 0.56 -0.0 2,535,791 - CCNA_02391 0.59 -0.2 2,535,862 - CCNA_02391 0.68 -0.7 2,535,869 - CCNA_02391 0.69 +0.2 2,535,870 + CCNA_02391 0.69 +0.1 2,535,893 + CCNA_02391 0.72 -0.9 2,535,932 - CCNA_02391 0.77 -0.3 2,535,933 - CCNA_02391 0.77 +1.2 2,535,950 + CCNA_02391 0.80 +0.5 2,535,950 + CCNA_02391 0.80 -0.5 2,535,959 + CCNA_02391 0.81 +0.5 2,535,963 - CCNA_02391 0.81 -0.0 2,535,978 - CCNA_02391 0.83 -0.8 2,535,996 + CCNA_02391 0.86 +0.0 2,536,011 - CCNA_02391 0.87 -0.3 2,536,026 - CCNA_02391 0.89 -1.0 2,536,028 + CCNA_02391 0.90 -1.3 2,536,028 + CCNA_02391 0.90 -0.3 2,536,036 - -0.6 2,536,036 - +0.8 2,536,049 + +0.2 2,536,050 + -2.2 2,536,090 + -1.9 2,536,128 - -0.4 2,536,153 - -0.8 2,536,179 - CCNA_02392 0.16 -0.6 2,536,203 - CCNA_02392 0.22 +0.1 2,536,230 + CCNA_02392 0.29 +0.4 2,536,238 - CCNA_02392 0.31 -0.7 2,536,368 + CCNA_02392 0.65 -0.5 2,536,368 + CCNA_02392 0.65 +1.3 2,536,369 - CCNA_02392 0.65 +0.1 2,536,386 - CCNA_02392 0.69 -0.4 2,536,403 - CCNA_02392 0.74 +1.5 2,536,405 + CCNA_02392 0.74 -0.0 2,536,432 + CCNA_02392 0.81 +0.6 2,536,466 - +0.5 2,536,511 - +0.1 2,536,569 - -0.6 2,536,666 - CCNA_03898 0.31 -0.2 2,536,783 + CCNA_03898 0.57 -1.4 2,536,811 + CCNA_03898 0.64 -0.2 2,536,811 + CCNA_03898 0.64 +0.7 2,536,811 + CCNA_03898 0.64 -0.7 2,536,811 + CCNA_03898 0.64 -0.5 2,536,811 + CCNA_03898 0.64 +0.5 2,536,811 + CCNA_03898 0.64 +0.2 2,536,819 - CCNA_03898 0.66 +0.4 2,536,819 - CCNA_03898 0.66 -0.8 2,536,819 - CCNA_03898 0.66 -0.7 2,536,837 + CCNA_03898 0.70 -0.4 2,536,847 + CCNA_03898 0.72 -0.9 2,536,867 + CCNA_03898 0.76 +0.2 2,536,872 + CCNA_03898 0.78 +0.7 2,536,872 + CCNA_03898 0.78 +1.4 2,536,875 - CCNA_03898 0.78 -0.6 2,536,875 - CCNA_03898 0.78 +1.1 2,536,880 - CCNA_03898 0.79 -0.2 2,536,927 + -0.5 2,536,927 + -1.0 2,536,927 + +0.9 2,536,928 + -0.1 2,536,953 + -0.0 2,536,999 + -0.0 2,536,999 + -0.0 2,537,000 - +0.2 2,537,007 - +0.6 2,537,028 + -0.5 2,537,028 + +0.2 2,537,036 - -0.5 2,537,045 + CCNA_03881 0.11 -0.6 2,537,072 + CCNA_03881 0.18 -0.6 2,537,131 - CCNA_03881 0.36 -0.2 2,537,150 + CCNA_03881 0.41 -0.2 2,537,160 - CCNA_03881 0.44 +0.1 2,537,222 + CCNA_03881 0.62 -2.8 2,537,231 + CCNA_03881 0.65 +0.7 2,537,234 - CCNA_03881 0.66 +0.3 2,537,234 - CCNA_03881 0.66 -1.5 2,537,252 + CCNA_03881 0.71 -1.3 2,537,257 + CCNA_03881 0.73 -1.2 2,537,264 + CCNA_03881 0.75 -0.6 2,537,272 - CCNA_03881 0.77 +0.5 2,537,305 + CCNA_03881 0.87 +1.1 2,537,322 + -0.9 2,537,330 - -0.4 2,537,345 + +0.6 2,537,345 + -1.0 2,537,345 + +0.3 2,537,345 + -1.6 2,537,345 + -0.4 2,537,345 + -1.1 2,537,345 + -0.5 2,537,345 + +0.1 2,537,345 + +1.0 2,537,345 + -0.8 2,537,345 + +0.2 2,537,345 + -0.2 2,537,345 + +0.2 2,537,345 + -0.7 2,537,353 - -0.6 2,537,353 - -0.4 2,537,353 - +2.5 2,537,353 - +1.3 2,537,353 - +0.8 2,537,353 - +0.5 2,537,353 - -0.8 2,537,353 - +0.1 2,537,353 - -0.6 2,537,353 - -0.1 2,537,353 - -1.0 2,537,353 - -0.2 2,537,353 - +1.6 2,537,375 + +0.0 2,537,387 + +0.1 2,537,387 + -1.2 2,537,422 - +0.6 2,537,483 + CCNA_02394 0.14 +0.5
Or see this region's nucleotide sequence