Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02307

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02306 and CCNA_02307 are separated by 6 nucleotidesCCNA_02307 and CCNA_02308 are separated by 126 nucleotides CCNA_02306: CCNA_02306 - histidinol-phosphate aminotransferase, at 2,451,284 to 2,452,405 _02306 CCNA_02307: CCNA_02307 - cyclohexadienyl dehydrogenase, at 2,452,412 to 2,453,350 _02307 CCNA_02308: CCNA_02308 - hypothetical protein, at 2,453,477 to 2,454,331 _02308 Position (kb) 2452 2453 2454Strain fitness (log2 ratio) -2 -1 0 1 2at 2451.420 kb on + strand, within CCNA_02306at 2451.433 kb on - strand, within CCNA_02306at 2451.475 kb on - strand, within CCNA_02306at 2451.496 kb on + strand, within CCNA_02306at 2451.535 kb on + strand, within CCNA_02306at 2451.541 kb on + strand, within CCNA_02306at 2451.541 kb on + strand, within CCNA_02306at 2451.543 kb on - strand, within CCNA_02306at 2451.549 kb on - strand, within CCNA_02306at 2451.562 kb on - strand, within CCNA_02306at 2451.578 kb on + strand, within CCNA_02306at 2451.609 kb on + strand, within CCNA_02306at 2451.612 kb on - strand, within CCNA_02306at 2451.635 kb on - strand, within CCNA_02306at 2451.698 kb on - strand, within CCNA_02306at 2451.737 kb on + strand, within CCNA_02306at 2451.745 kb on - strand, within CCNA_02306at 2451.794 kb on - strand, within CCNA_02306at 2451.801 kb on + strand, within CCNA_02306at 2451.823 kb on + strand, within CCNA_02306at 2451.823 kb on + strand, within CCNA_02306at 2451.874 kb on - strand, within CCNA_02306at 2451.874 kb on - strand, within CCNA_02306at 2451.874 kb on - strand, within CCNA_02306at 2451.889 kb on + strand, within CCNA_02306at 2451.889 kb on + strand, within CCNA_02306at 2451.889 kb on + strand, within CCNA_02306at 2451.918 kb on + strand, within CCNA_02306at 2451.918 kb on + strand, within CCNA_02306at 2451.923 kb on + strand, within CCNA_02306at 2451.926 kb on - strand, within CCNA_02306at 2451.926 kb on - strand, within CCNA_02306at 2451.931 kb on - strand, within CCNA_02306at 2451.947 kb on - strand, within CCNA_02306at 2451.963 kb on - strand, within CCNA_02306at 2451.965 kb on - strand, within CCNA_02306at 2452.001 kb on + strand, within CCNA_02306at 2452.009 kb on - strand, within CCNA_02306at 2452.009 kb on - strand, within CCNA_02306at 2452.009 kb on - strand, within CCNA_02306at 2452.102 kb on + strand, within CCNA_02306at 2452.184 kb on + strand, within CCNA_02306at 2452.243 kb on + strand, within CCNA_02306at 2452.248 kb on + strand, within CCNA_02306at 2452.251 kb on - strand, within CCNA_02306at 2452.276 kb on - strand, within CCNA_02306at 2452.320 kb on - strandat 2452.398 kb on - strandat 2452.398 kb on - strandat 2452.399 kb on + strandat 2452.402 kb on + strandat 2452.414 kb on + strandat 2452.434 kb on + strandat 2452.463 kb on - strandat 2452.463 kb on - strandat 2452.497 kb on + strandat 2452.567 kb on + strand, within CCNA_02307at 2452.695 kb on + strand, within CCNA_02307at 2452.703 kb on - strand, within CCNA_02307at 2452.725 kb on + strand, within CCNA_02307at 2452.735 kb on + strand, within CCNA_02307at 2452.736 kb on + strand, within CCNA_02307at 2452.780 kb on - strand, within CCNA_02307at 2452.795 kb on + strand, within CCNA_02307at 2452.927 kb on - strand, within CCNA_02307at 2452.986 kb on - strand, within CCNA_02307at 2452.997 kb on + strand, within CCNA_02307at 2453.024 kb on + strand, within CCNA_02307at 2453.032 kb on - strand, within CCNA_02307at 2453.168 kb on + strand, within CCNA_02307at 2453.168 kb on + strand, within CCNA_02307at 2453.168 kb on + strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.308 kb on - strandat 2453.308 kb on - strandat 2453.344 kb on + strandat 2453.345 kb on + strandat 2453.352 kb on - strandat 2453.353 kb on - strandat 2453.420 kb on - strandat 2453.433 kb on - strandat 2453.479 kb on + strandat 2453.506 kb on - strandat 2453.506 kb on - strandat 2453.535 kb on + strandat 2453.543 kb on - strandat 2453.543 kb on - strandat 2453.543 kb on - strandat 2453.553 kb on - strandat 2453.592 kb on + strand, within CCNA_02308at 2453.600 kb on - strand, within CCNA_02308at 2453.610 kb on + strand, within CCNA_02308at 2453.659 kb on - strand, within CCNA_02308at 2453.660 kb on + strand, within CCNA_02308at 2453.698 kb on - strand, within CCNA_02308at 2453.706 kb on + strand, within CCNA_02308at 2453.724 kb on - strand, within CCNA_02308at 2453.736 kb on - strand, within CCNA_02308at 2453.751 kb on - strand, within CCNA_02308at 2453.779 kb on - strand, within CCNA_02308at 2453.818 kb on + strand, within CCNA_02308at 2453.844 kb on + strand, within CCNA_02308at 2453.869 kb on - strand, within CCNA_02308at 2453.869 kb on - strand, within CCNA_02308at 2453.879 kb on - strand, within CCNA_02308at 2453.915 kb on - strand, within CCNA_02308at 2453.964 kb on - strand, within CCNA_02308at 2453.964 kb on - strand, within CCNA_02308at 2453.966 kb on + strand, within CCNA_02308at 2453.990 kb on + strand, within CCNA_02308at 2454.037 kb on - strand, within CCNA_02308at 2454.123 kb on + strand, within CCNA_02308at 2454.151 kb on + strand, within CCNA_02308at 2454.222 kb on + strand, within CCNA_02308at 2454.230 kb on - strand, within CCNA_02308at 2454.230 kb on - strand, within CCNA_02308at 2454.249 kb on + strandat 2454.254 kb on + strandat 2454.254 kb on + strandat 2454.257 kb on - strandat 2454.267 kb on - strandat 2454.317 kb on - strandat 2454.323 kb on + strandat 2454.339 kb on + strandat 2454.344 kb on + strandat 2454.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,451,420 + CCNA_02306 0.12 +0.3
2,451,433 - CCNA_02306 0.13 +0.7
2,451,475 - CCNA_02306 0.17 -0.5
2,451,496 + CCNA_02306 0.19 +0.2
2,451,535 + CCNA_02306 0.22 +0.3
2,451,541 + CCNA_02306 0.23 +0.4
2,451,541 + CCNA_02306 0.23 -0.7
2,451,543 - CCNA_02306 0.23 -0.3
2,451,549 - CCNA_02306 0.24 -1.0
2,451,562 - CCNA_02306 0.25 +1.3
2,451,578 + CCNA_02306 0.26 -0.1
2,451,609 + CCNA_02306 0.29 -0.1
2,451,612 - CCNA_02306 0.29 -0.4
2,451,635 - CCNA_02306 0.31 -0.1
2,451,698 - CCNA_02306 0.37 +0.5
2,451,737 + CCNA_02306 0.40 +0.3
2,451,745 - CCNA_02306 0.41 -0.2
2,451,794 - CCNA_02306 0.45 -0.7
2,451,801 + CCNA_02306 0.46 -0.0
2,451,823 + CCNA_02306 0.48 +0.6
2,451,823 + CCNA_02306 0.48 -0.0
2,451,874 - CCNA_02306 0.53 -0.7
2,451,874 - CCNA_02306 0.53 +0.3
2,451,874 - CCNA_02306 0.53 -0.8
2,451,889 + CCNA_02306 0.54 +0.2
2,451,889 + CCNA_02306 0.54 +0.1
2,451,889 + CCNA_02306 0.54 +0.0
2,451,918 + CCNA_02306 0.57 +0.2
2,451,918 + CCNA_02306 0.57 -0.6
2,451,923 + CCNA_02306 0.57 +0.5
2,451,926 - CCNA_02306 0.57 -0.2
2,451,926 - CCNA_02306 0.57 +0.5
2,451,931 - CCNA_02306 0.58 -0.0
2,451,947 - CCNA_02306 0.59 -0.7
2,451,963 - CCNA_02306 0.61 +0.6
2,451,965 - CCNA_02306 0.61 +0.6
2,452,001 + CCNA_02306 0.64 -0.1
2,452,009 - CCNA_02306 0.65 -0.8
2,452,009 - CCNA_02306 0.65 +0.9
2,452,009 - CCNA_02306 0.65 -0.0
2,452,102 + CCNA_02306 0.73 -0.1
2,452,184 + CCNA_02306 0.80 -0.1
2,452,243 + CCNA_02306 0.85 +0.9
2,452,248 + CCNA_02306 0.86 +0.5
2,452,251 - CCNA_02306 0.86 -0.1
2,452,276 - CCNA_02306 0.88 -0.4
2,452,320 - +0.2
2,452,398 - -0.2
2,452,398 - -0.2
2,452,399 + +0.1
2,452,402 + +0.3
2,452,414 + -0.5
2,452,434 + +0.4
2,452,463 - +0.1
2,452,463 - -1.1
2,452,497 + +0.8
2,452,567 + CCNA_02307 0.17 -1.5
2,452,695 + CCNA_02307 0.30 +1.0
2,452,703 - CCNA_02307 0.31 +0.2
2,452,725 + CCNA_02307 0.33 +0.1
2,452,735 + CCNA_02307 0.34 -0.2
2,452,736 + CCNA_02307 0.35 +0.1
2,452,780 - CCNA_02307 0.39 +0.0
2,452,795 + CCNA_02307 0.41 -0.0
2,452,927 - CCNA_02307 0.55 -1.2
2,452,986 - CCNA_02307 0.61 +0.1
2,452,997 + CCNA_02307 0.62 +0.7
2,453,024 + CCNA_02307 0.65 +0.5
2,453,032 - CCNA_02307 0.66 -0.4
2,453,168 + CCNA_02307 0.81 +2.6
2,453,168 + CCNA_02307 0.81 +0.4
2,453,168 + CCNA_02307 0.81 +0.3
2,453,176 - CCNA_02307 0.81 -0.1
2,453,300 + +0.2
2,453,300 + +0.2
2,453,300 + +1.3
2,453,308 - +0.7
2,453,308 - -0.8
2,453,344 + +0.9
2,453,345 + +0.4
2,453,352 - +0.8
2,453,353 - -1.5
2,453,420 - +0.7
2,453,433 - -0.5
2,453,479 + +0.4
2,453,506 - +0.2
2,453,506 - -0.7
2,453,535 + -0.2
2,453,543 - -0.1
2,453,543 - -0.5
2,453,543 - +0.4
2,453,553 - -0.0
2,453,592 + CCNA_02308 0.13 +0.2
2,453,600 - CCNA_02308 0.14 -0.2
2,453,610 + CCNA_02308 0.16 -1.1
2,453,659 - CCNA_02308 0.21 -0.2
2,453,660 + CCNA_02308 0.21 -0.9
2,453,698 - CCNA_02308 0.26 -0.2
2,453,706 + CCNA_02308 0.27 -0.1
2,453,724 - CCNA_02308 0.29 -2.4
2,453,736 - CCNA_02308 0.30 +0.7
2,453,751 - CCNA_02308 0.32 +0.3
2,453,779 - CCNA_02308 0.35 -0.5
2,453,818 + CCNA_02308 0.40 -0.3
2,453,844 + CCNA_02308 0.43 -0.2
2,453,869 - CCNA_02308 0.46 -0.1
2,453,869 - CCNA_02308 0.46 -0.6
2,453,879 - CCNA_02308 0.47 +0.2
2,453,915 - CCNA_02308 0.51 +0.2
2,453,964 - CCNA_02308 0.57 -0.5
2,453,964 - CCNA_02308 0.57 -0.2
2,453,966 + CCNA_02308 0.57 +0.8
2,453,990 + CCNA_02308 0.60 -1.7
2,454,037 - CCNA_02308 0.65 -0.6
2,454,123 + CCNA_02308 0.76 -0.8
2,454,151 + CCNA_02308 0.79 -1.4
2,454,222 + CCNA_02308 0.87 -1.1
2,454,230 - CCNA_02308 0.88 +0.5
2,454,230 - CCNA_02308 0.88 -0.3
2,454,249 + +0.3
2,454,254 + -1.1
2,454,254 + -0.4
2,454,257 - -0.9
2,454,267 - +0.3
2,454,317 - -0.7
2,454,323 + -0.9
2,454,339 + +0.7
2,454,344 + -0.5
2,454,346 + -1.1

Or see this region's nucleotide sequence