Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02306 and CCNA_02307 are separated by 6 nucleotides CCNA_02307 and CCNA_02308 are separated by 126 nucleotides
CCNA_02306: CCNA_02306 - histidinol-phosphate aminotransferase, at 2,451,284 to 2,452,405
_02306
CCNA_02307: CCNA_02307 - cyclohexadienyl dehydrogenase, at 2,452,412 to 2,453,350
_02307
CCNA_02308: CCNA_02308 - hypothetical protein, at 2,453,477 to 2,454,331
_02308
Position (kb)
2452
2453
2454 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2451.420 kb on + strand, within CCNA_02306 at 2451.433 kb on - strand, within CCNA_02306 at 2451.475 kb on - strand, within CCNA_02306 at 2451.496 kb on + strand, within CCNA_02306 at 2451.535 kb on + strand, within CCNA_02306 at 2451.541 kb on + strand, within CCNA_02306 at 2451.541 kb on + strand, within CCNA_02306 at 2451.543 kb on - strand, within CCNA_02306 at 2451.549 kb on - strand, within CCNA_02306 at 2451.562 kb on - strand, within CCNA_02306 at 2451.578 kb on + strand, within CCNA_02306 at 2451.609 kb on + strand, within CCNA_02306 at 2451.612 kb on - strand, within CCNA_02306 at 2451.635 kb on - strand, within CCNA_02306 at 2451.698 kb on - strand, within CCNA_02306 at 2451.737 kb on + strand, within CCNA_02306 at 2451.745 kb on - strand, within CCNA_02306 at 2451.794 kb on - strand, within CCNA_02306 at 2451.801 kb on + strand, within CCNA_02306 at 2451.823 kb on + strand, within CCNA_02306 at 2451.823 kb on + strand, within CCNA_02306 at 2451.874 kb on - strand, within CCNA_02306 at 2451.874 kb on - strand, within CCNA_02306 at 2451.874 kb on - strand, within CCNA_02306 at 2451.889 kb on + strand, within CCNA_02306 at 2451.889 kb on + strand, within CCNA_02306 at 2451.889 kb on + strand, within CCNA_02306 at 2451.918 kb on + strand, within CCNA_02306 at 2451.918 kb on + strand, within CCNA_02306 at 2451.923 kb on + strand, within CCNA_02306 at 2451.926 kb on - strand, within CCNA_02306 at 2451.926 kb on - strand, within CCNA_02306 at 2451.931 kb on - strand, within CCNA_02306 at 2451.947 kb on - strand, within CCNA_02306 at 2451.963 kb on - strand, within CCNA_02306 at 2451.965 kb on - strand, within CCNA_02306 at 2452.001 kb on + strand, within CCNA_02306 at 2452.009 kb on - strand, within CCNA_02306 at 2452.009 kb on - strand, within CCNA_02306 at 2452.009 kb on - strand, within CCNA_02306 at 2452.102 kb on + strand, within CCNA_02306 at 2452.184 kb on + strand, within CCNA_02306 at 2452.243 kb on + strand, within CCNA_02306 at 2452.248 kb on + strand, within CCNA_02306 at 2452.251 kb on - strand, within CCNA_02306 at 2452.276 kb on - strand, within CCNA_02306 at 2452.320 kb on - strand at 2452.398 kb on - strand at 2452.398 kb on - strand at 2452.399 kb on + strand at 2452.402 kb on + strand at 2452.414 kb on + strand at 2452.434 kb on + strand at 2452.463 kb on - strand at 2452.463 kb on - strand at 2452.497 kb on + strand at 2452.567 kb on + strand, within CCNA_02307 at 2452.695 kb on + strand, within CCNA_02307 at 2452.703 kb on - strand, within CCNA_02307 at 2452.725 kb on + strand, within CCNA_02307 at 2452.735 kb on + strand, within CCNA_02307 at 2452.736 kb on + strand, within CCNA_02307 at 2452.780 kb on - strand, within CCNA_02307 at 2452.795 kb on + strand, within CCNA_02307 at 2452.927 kb on - strand, within CCNA_02307 at 2452.986 kb on - strand, within CCNA_02307 at 2452.997 kb on + strand, within CCNA_02307 at 2453.024 kb on + strand, within CCNA_02307 at 2453.032 kb on - strand, within CCNA_02307 at 2453.168 kb on + strand, within CCNA_02307 at 2453.168 kb on + strand, within CCNA_02307 at 2453.168 kb on + strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.308 kb on - strand at 2453.308 kb on - strand at 2453.344 kb on + strand at 2453.345 kb on + strand at 2453.352 kb on - strand at 2453.353 kb on - strand at 2453.420 kb on - strand at 2453.433 kb on - strand at 2453.479 kb on + strand at 2453.506 kb on - strand at 2453.506 kb on - strand at 2453.535 kb on + strand at 2453.543 kb on - strand at 2453.543 kb on - strand at 2453.543 kb on - strand at 2453.553 kb on - strand at 2453.592 kb on + strand, within CCNA_02308 at 2453.600 kb on - strand, within CCNA_02308 at 2453.610 kb on + strand, within CCNA_02308 at 2453.659 kb on - strand, within CCNA_02308 at 2453.660 kb on + strand, within CCNA_02308 at 2453.698 kb on - strand, within CCNA_02308 at 2453.706 kb on + strand, within CCNA_02308 at 2453.724 kb on - strand, within CCNA_02308 at 2453.736 kb on - strand, within CCNA_02308 at 2453.751 kb on - strand, within CCNA_02308 at 2453.779 kb on - strand, within CCNA_02308 at 2453.818 kb on + strand, within CCNA_02308 at 2453.844 kb on + strand, within CCNA_02308 at 2453.869 kb on - strand, within CCNA_02308 at 2453.869 kb on - strand, within CCNA_02308 at 2453.879 kb on - strand, within CCNA_02308 at 2453.915 kb on - strand, within CCNA_02308 at 2453.964 kb on - strand, within CCNA_02308 at 2453.964 kb on - strand, within CCNA_02308 at 2453.966 kb on + strand, within CCNA_02308 at 2453.990 kb on + strand, within CCNA_02308 at 2454.037 kb on - strand, within CCNA_02308 at 2454.123 kb on + strand, within CCNA_02308 at 2454.151 kb on + strand, within CCNA_02308 at 2454.222 kb on + strand, within CCNA_02308 at 2454.230 kb on - strand, within CCNA_02308 at 2454.230 kb on - strand, within CCNA_02308 at 2454.249 kb on + strand at 2454.254 kb on + strand at 2454.254 kb on + strand at 2454.257 kb on - strand at 2454.267 kb on - strand at 2454.317 kb on - strand at 2454.323 kb on + strand at 2454.339 kb on + strand at 2454.344 kb on + strand at 2454.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,451,420 + CCNA_02306 0.12 +0.3 2,451,433 - CCNA_02306 0.13 +0.7 2,451,475 - CCNA_02306 0.17 -0.5 2,451,496 + CCNA_02306 0.19 +0.2 2,451,535 + CCNA_02306 0.22 +0.3 2,451,541 + CCNA_02306 0.23 +0.4 2,451,541 + CCNA_02306 0.23 -0.7 2,451,543 - CCNA_02306 0.23 -0.3 2,451,549 - CCNA_02306 0.24 -1.0 2,451,562 - CCNA_02306 0.25 +1.3 2,451,578 + CCNA_02306 0.26 -0.1 2,451,609 + CCNA_02306 0.29 -0.1 2,451,612 - CCNA_02306 0.29 -0.4 2,451,635 - CCNA_02306 0.31 -0.1 2,451,698 - CCNA_02306 0.37 +0.5 2,451,737 + CCNA_02306 0.40 +0.3 2,451,745 - CCNA_02306 0.41 -0.2 2,451,794 - CCNA_02306 0.45 -0.7 2,451,801 + CCNA_02306 0.46 -0.0 2,451,823 + CCNA_02306 0.48 +0.6 2,451,823 + CCNA_02306 0.48 -0.0 2,451,874 - CCNA_02306 0.53 -0.7 2,451,874 - CCNA_02306 0.53 +0.3 2,451,874 - CCNA_02306 0.53 -0.8 2,451,889 + CCNA_02306 0.54 +0.2 2,451,889 + CCNA_02306 0.54 +0.1 2,451,889 + CCNA_02306 0.54 +0.0 2,451,918 + CCNA_02306 0.57 +0.2 2,451,918 + CCNA_02306 0.57 -0.6 2,451,923 + CCNA_02306 0.57 +0.5 2,451,926 - CCNA_02306 0.57 -0.2 2,451,926 - CCNA_02306 0.57 +0.5 2,451,931 - CCNA_02306 0.58 -0.0 2,451,947 - CCNA_02306 0.59 -0.7 2,451,963 - CCNA_02306 0.61 +0.6 2,451,965 - CCNA_02306 0.61 +0.6 2,452,001 + CCNA_02306 0.64 -0.1 2,452,009 - CCNA_02306 0.65 -0.8 2,452,009 - CCNA_02306 0.65 +0.9 2,452,009 - CCNA_02306 0.65 -0.0 2,452,102 + CCNA_02306 0.73 -0.1 2,452,184 + CCNA_02306 0.80 -0.1 2,452,243 + CCNA_02306 0.85 +0.9 2,452,248 + CCNA_02306 0.86 +0.5 2,452,251 - CCNA_02306 0.86 -0.1 2,452,276 - CCNA_02306 0.88 -0.4 2,452,320 - +0.2 2,452,398 - -0.2 2,452,398 - -0.2 2,452,399 + +0.1 2,452,402 + +0.3 2,452,414 + -0.5 2,452,434 + +0.4 2,452,463 - +0.1 2,452,463 - -1.1 2,452,497 + +0.8 2,452,567 + CCNA_02307 0.17 -1.5 2,452,695 + CCNA_02307 0.30 +1.0 2,452,703 - CCNA_02307 0.31 +0.2 2,452,725 + CCNA_02307 0.33 +0.1 2,452,735 + CCNA_02307 0.34 -0.2 2,452,736 + CCNA_02307 0.35 +0.1 2,452,780 - CCNA_02307 0.39 +0.0 2,452,795 + CCNA_02307 0.41 -0.0 2,452,927 - CCNA_02307 0.55 -1.2 2,452,986 - CCNA_02307 0.61 +0.1 2,452,997 + CCNA_02307 0.62 +0.7 2,453,024 + CCNA_02307 0.65 +0.5 2,453,032 - CCNA_02307 0.66 -0.4 2,453,168 + CCNA_02307 0.81 +2.6 2,453,168 + CCNA_02307 0.81 +0.4 2,453,168 + CCNA_02307 0.81 +0.3 2,453,176 - CCNA_02307 0.81 -0.1 2,453,300 + +0.2 2,453,300 + +0.2 2,453,300 + +1.3 2,453,308 - +0.7 2,453,308 - -0.8 2,453,344 + +0.9 2,453,345 + +0.4 2,453,352 - +0.8 2,453,353 - -1.5 2,453,420 - +0.7 2,453,433 - -0.5 2,453,479 + +0.4 2,453,506 - +0.2 2,453,506 - -0.7 2,453,535 + -0.2 2,453,543 - -0.1 2,453,543 - -0.5 2,453,543 - +0.4 2,453,553 - -0.0 2,453,592 + CCNA_02308 0.13 +0.2 2,453,600 - CCNA_02308 0.14 -0.2 2,453,610 + CCNA_02308 0.16 -1.1 2,453,659 - CCNA_02308 0.21 -0.2 2,453,660 + CCNA_02308 0.21 -0.9 2,453,698 - CCNA_02308 0.26 -0.2 2,453,706 + CCNA_02308 0.27 -0.1 2,453,724 - CCNA_02308 0.29 -2.4 2,453,736 - CCNA_02308 0.30 +0.7 2,453,751 - CCNA_02308 0.32 +0.3 2,453,779 - CCNA_02308 0.35 -0.5 2,453,818 + CCNA_02308 0.40 -0.3 2,453,844 + CCNA_02308 0.43 -0.2 2,453,869 - CCNA_02308 0.46 -0.1 2,453,869 - CCNA_02308 0.46 -0.6 2,453,879 - CCNA_02308 0.47 +0.2 2,453,915 - CCNA_02308 0.51 +0.2 2,453,964 - CCNA_02308 0.57 -0.5 2,453,964 - CCNA_02308 0.57 -0.2 2,453,966 + CCNA_02308 0.57 +0.8 2,453,990 + CCNA_02308 0.60 -1.7 2,454,037 - CCNA_02308 0.65 -0.6 2,454,123 + CCNA_02308 0.76 -0.8 2,454,151 + CCNA_02308 0.79 -1.4 2,454,222 + CCNA_02308 0.87 -1.1 2,454,230 - CCNA_02308 0.88 +0.5 2,454,230 - CCNA_02308 0.88 -0.3 2,454,249 + +0.3 2,454,254 + -1.1 2,454,254 + -0.4 2,454,257 - -0.9 2,454,267 - +0.3 2,454,317 - -0.7 2,454,323 + -0.9 2,454,339 + +0.7 2,454,344 + -0.5 2,454,346 + -1.1
Or see this region's nucleotide sequence