Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02269 and CCNA_02270 are separated by 117 nucleotides CCNA_02270 and CCNA_02271 are separated by 227 nucleotides CCNA_02271 and CCNA_02272 are separated by 68 nucleotides CCNA_02272 and CCNA_02273 are separated by 34 nucleotides CCNA_02273 and CCNA_02274 are separated by 125 nucleotides
CCNA_02269: CCNA_02269 - L-aminopeptidase/D-esterase dmpA, at 2,421,986 to 2,422,978
_02269
CCNA_02270: CCNA_02270 - MarR-family transcriptional regulator, at 2,423,096 to 2,423,605
_02270
CCNA_02271: CCNA_02271 - stalk cross-band protein StpD, at 2,423,833 to 2,424,618
_02271
CCNA_02272: CCNA_02272 - hypothetical protein, at 2,424,687 to 2,424,929
_02272
CCNA_02273: CCNA_02273 - glutathione peroxidase, at 2,424,964 to 2,425,212
_02273
CCNA_02274: CCNA_02274 - EF-Hand domain protein, at 2,425,338 to 2,425,823
_02274
Position (kb)
2423
2424
2425 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2422.952 kb on + strand at 2422.960 kb on - strand at 2422.989 kb on - strand at 2423.086 kb on + strand at 2423.093 kb on + strand at 2423.094 kb on + strand at 2423.101 kb on - strand at 2423.102 kb on + strand at 2423.280 kb on - strand, within CCNA_02270 at 2423.325 kb on - strand, within CCNA_02270 at 2423.338 kb on + strand, within CCNA_02270 at 2423.391 kb on + strand, within CCNA_02270 at 2423.391 kb on + strand, within CCNA_02270 at 2423.425 kb on - strand, within CCNA_02270 at 2423.450 kb on + strand, within CCNA_02270 at 2423.458 kb on - strand, within CCNA_02270 at 2423.572 kb on + strand at 2423.580 kb on - strand at 2423.614 kb on + strand at 2423.662 kb on - strand at 2423.698 kb on - strand at 2423.723 kb on - strand at 2423.723 kb on - strand at 2423.754 kb on + strand at 2423.831 kb on + strand at 2424.008 kb on + strand, within CCNA_02271 at 2424.041 kb on + strand, within CCNA_02271 at 2424.041 kb on + strand, within CCNA_02271 at 2424.183 kb on - strand, within CCNA_02271 at 2424.229 kb on - strand, within CCNA_02271 at 2424.260 kb on + strand, within CCNA_02271 at 2424.262 kb on + strand, within CCNA_02271 at 2424.268 kb on - strand, within CCNA_02271 at 2424.269 kb on + strand, within CCNA_02271 at 2424.272 kb on + strand, within CCNA_02271 at 2424.280 kb on - strand, within CCNA_02271 at 2424.290 kb on - strand, within CCNA_02271 at 2424.290 kb on - strand, within CCNA_02271 at 2424.313 kb on + strand, within CCNA_02271 at 2424.370 kb on - strand, within CCNA_02271 at 2424.443 kb on + strand, within CCNA_02271 at 2424.577 kb on - strand at 2424.648 kb on + strand at 2424.747 kb on + strand, within CCNA_02272 at 2424.755 kb on - strand, within CCNA_02272 at 2424.805 kb on - strand, within CCNA_02272 at 2424.852 kb on + strand, within CCNA_02272 at 2424.904 kb on - strand, within CCNA_02272 at 2424.962 kb on + strand at 2425.006 kb on - strand, within CCNA_02273 at 2425.248 kb on + strand at 2425.343 kb on - strand at 2425.576 kb on + strand, within CCNA_02274 at 2425.576 kb on + strand, within CCNA_02274 at 2425.584 kb on - strand, within CCNA_02274 at 2425.584 kb on - strand, within CCNA_02274
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,422,952 + +0.2 2,422,960 - -0.1 2,422,989 - -0.7 2,423,086 + +0.1 2,423,093 + -0.2 2,423,094 + +1.1 2,423,101 - +0.4 2,423,102 + -0.1 2,423,280 - CCNA_02270 0.36 +1.7 2,423,325 - CCNA_02270 0.45 +0.9 2,423,338 + CCNA_02270 0.47 -1.0 2,423,391 + CCNA_02270 0.58 -0.3 2,423,391 + CCNA_02270 0.58 +0.5 2,423,425 - CCNA_02270 0.65 -0.1 2,423,450 + CCNA_02270 0.69 +0.1 2,423,458 - CCNA_02270 0.71 +0.0 2,423,572 + -0.8 2,423,580 - -0.0 2,423,614 + -1.0 2,423,662 - +2.1 2,423,698 - +0.6 2,423,723 - +1.6 2,423,723 - +0.7 2,423,754 + -0.2 2,423,831 + -0.5 2,424,008 + CCNA_02271 0.22 -0.7 2,424,041 + CCNA_02271 0.26 -0.3 2,424,041 + CCNA_02271 0.26 +0.1 2,424,183 - CCNA_02271 0.45 -1.1 2,424,229 - CCNA_02271 0.50 +1.1 2,424,260 + CCNA_02271 0.54 -0.3 2,424,262 + CCNA_02271 0.55 -0.0 2,424,268 - CCNA_02271 0.55 -0.1 2,424,269 + CCNA_02271 0.55 -0.4 2,424,272 + CCNA_02271 0.56 -0.4 2,424,280 - CCNA_02271 0.57 +0.1 2,424,290 - CCNA_02271 0.58 -0.3 2,424,290 - CCNA_02271 0.58 -0.7 2,424,313 + CCNA_02271 0.61 +0.3 2,424,370 - CCNA_02271 0.68 +0.6 2,424,443 + CCNA_02271 0.78 +0.1 2,424,577 - -0.4 2,424,648 + -1.6 2,424,747 + CCNA_02272 0.25 -0.2 2,424,755 - CCNA_02272 0.28 +0.3 2,424,805 - CCNA_02272 0.49 -0.5 2,424,852 + CCNA_02272 0.68 -1.8 2,424,904 - CCNA_02272 0.89 +0.6 2,424,962 + +0.0 2,425,006 - CCNA_02273 0.17 -0.3 2,425,248 + -0.4 2,425,343 - -0.4 2,425,576 + CCNA_02274 0.49 -0.7 2,425,576 + CCNA_02274 0.49 +1.3 2,425,584 - CCNA_02274 0.51 +0.5 2,425,584 - CCNA_02274 0.51 +0.1
Or see this region's nucleotide sequence