Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02262 and CCNA_02263 overlap by 4 nucleotides CCNA_02263 and CCNA_02264 are separated by 178 nucleotides CCNA_02264 and CCNA_02265 are separated by 52 nucleotides CCNA_02265 and CCNA_02266 are separated by 56 nucleotides
CCNA_02262: CCNA_02262 - laminin G domain protein, at 2,413,447 to 2,417,358
_02262
CCNA_02263: CCNA_02263 - glcG-family protein, at 2,417,355 to 2,417,846
_02263
CCNA_02264: CCNA_02264 - thiJ/PfpI family, at 2,418,025 to 2,418,600
_02264
CCNA_02265: CCNA_02265 - peptide methionine sulfoxide reductase msrB, at 2,418,653 to 2,419,132
_02265
CCNA_02266: CCNA_02266 - glutathione S-transferase GST, at 2,419,189 to 2,420,253
_02266
Position (kb)
2418
2419 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2417.026 kb on - strand at 2417.031 kb on - strand at 2417.057 kb on + strand at 2417.062 kb on + strand at 2417.062 kb on + strand at 2417.070 kb on - strand at 2417.070 kb on - strand at 2417.164 kb on - strand at 2417.164 kb on - strand at 2417.164 kb on - strand at 2417.185 kb on + strand at 2417.185 kb on + strand at 2417.185 kb on + strand at 2417.193 kb on - strand at 2417.235 kb on + strand at 2417.235 kb on + strand at 2417.235 kb on + strand at 2417.235 kb on + strand at 2417.243 kb on - strand at 2417.280 kb on + strand at 2417.281 kb on + strand at 2417.288 kb on - strand at 2417.288 kb on - strand at 2417.288 kb on - strand at 2417.303 kb on - strand at 2417.317 kb on + strand at 2417.317 kb on + strand at 2417.317 kb on + strand at 2417.317 kb on + strand at 2417.325 kb on - strand at 2417.325 kb on - strand at 2417.325 kb on - strand at 2417.325 kb on - strand at 2417.329 kb on + strand at 2417.332 kb on - strand at 2417.337 kb on - strand at 2417.373 kb on - strand at 2417.393 kb on - strand at 2417.393 kb on - strand at 2417.393 kb on - strand at 2417.394 kb on - strand at 2417.403 kb on + strand at 2417.414 kb on + strand, within CCNA_02263 at 2417.414 kb on + strand, within CCNA_02263 at 2417.464 kb on + strand, within CCNA_02263 at 2417.525 kb on + strand, within CCNA_02263 at 2417.532 kb on + strand, within CCNA_02263 at 2417.593 kb on + strand, within CCNA_02263 at 2417.603 kb on - strand, within CCNA_02263 at 2417.606 kb on - strand, within CCNA_02263 at 2417.631 kb on + strand, within CCNA_02263 at 2417.638 kb on - strand, within CCNA_02263 at 2417.639 kb on - strand, within CCNA_02263 at 2417.661 kb on + strand, within CCNA_02263 at 2417.679 kb on + strand, within CCNA_02263 at 2417.752 kb on - strand, within CCNA_02263 at 2417.799 kb on + strand at 2417.802 kb on - strand at 2417.807 kb on - strand at 2417.809 kb on + strand at 2417.809 kb on + strand at 2417.826 kb on + strand at 2417.868 kb on + strand at 2417.876 kb on - strand at 2417.923 kb on + strand at 2418.005 kb on + strand at 2418.045 kb on - strand at 2418.126 kb on - strand, within CCNA_02264 at 2418.182 kb on + strand, within CCNA_02264 at 2418.182 kb on + strand, within CCNA_02264 at 2418.205 kb on + strand, within CCNA_02264 at 2418.213 kb on - strand, within CCNA_02264 at 2418.213 kb on - strand, within CCNA_02264 at 2418.245 kb on - strand, within CCNA_02264 at 2418.325 kb on + strand, within CCNA_02264 at 2418.342 kb on + strand, within CCNA_02264 at 2418.368 kb on + strand, within CCNA_02264 at 2418.381 kb on - strand, within CCNA_02264 at 2418.415 kb on + strand, within CCNA_02264 at 2418.415 kb on + strand, within CCNA_02264 at 2418.415 kb on + strand, within CCNA_02264 at 2418.423 kb on - strand, within CCNA_02264 at 2418.423 kb on - strand, within CCNA_02264 at 2418.428 kb on - strand, within CCNA_02264 at 2418.520 kb on - strand, within CCNA_02264 at 2418.525 kb on + strand, within CCNA_02264 at 2418.535 kb on + strand, within CCNA_02264 at 2418.543 kb on - strand at 2418.543 kb on - strand at 2418.543 kb on - strand at 2418.598 kb on + strand at 2418.649 kb on + strand at 2418.670 kb on + strand at 2418.684 kb on + strand at 2418.684 kb on + strand at 2418.689 kb on + strand at 2418.692 kb on - strand at 2418.759 kb on - strand, within CCNA_02265 at 2418.856 kb on + strand, within CCNA_02265 at 2418.880 kb on - strand, within CCNA_02265 at 2418.898 kb on - strand, within CCNA_02265 at 2419.003 kb on + strand, within CCNA_02265 at 2419.004 kb on + strand, within CCNA_02265 at 2419.058 kb on - strand, within CCNA_02265 at 2419.086 kb on + strand at 2419.101 kb on + strand at 2419.116 kb on - strand at 2419.215 kb on + strand at 2419.242 kb on - strand at 2419.248 kb on - strand at 2419.264 kb on + strand at 2419.296 kb on + strand, within CCNA_02266 at 2419.324 kb on - strand, within CCNA_02266 at 2419.376 kb on - strand, within CCNA_02266 at 2419.385 kb on - strand, within CCNA_02266 at 2419.385 kb on - strand, within CCNA_02266 at 2419.435 kb on - strand, within CCNA_02266 at 2419.435 kb on - strand, within CCNA_02266 at 2419.524 kb on + strand, within CCNA_02266 at 2419.537 kb on - strand, within CCNA_02266 at 2419.537 kb on - strand, within CCNA_02266 at 2419.553 kb on - strand, within CCNA_02266 at 2419.553 kb on - strand, within CCNA_02266 at 2419.566 kb on - strand, within CCNA_02266 at 2419.595 kb on + strand, within CCNA_02266
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,417,026 - +0.2 2,417,031 - -1.3 2,417,057 + -0.5 2,417,062 + +0.1 2,417,062 + -0.2 2,417,070 - +0.3 2,417,070 - +0.5 2,417,164 - +0.4 2,417,164 - -0.2 2,417,164 - -0.6 2,417,185 + +1.1 2,417,185 + -0.2 2,417,185 + -1.5 2,417,193 - -1.4 2,417,235 + -0.4 2,417,235 + +1.2 2,417,235 + +0.7 2,417,235 + +0.6 2,417,243 - -1.3 2,417,280 + -0.8 2,417,281 + -0.6 2,417,288 - -1.4 2,417,288 - -1.0 2,417,288 - -0.5 2,417,303 - -0.2 2,417,317 + -0.6 2,417,317 + +0.6 2,417,317 + -0.2 2,417,317 + -0.5 2,417,325 - -0.5 2,417,325 - -0.1 2,417,325 - +0.8 2,417,325 - +0.8 2,417,329 + -0.5 2,417,332 - -0.8 2,417,337 - +0.5 2,417,373 - -0.2 2,417,393 - +0.9 2,417,393 - -0.7 2,417,393 - +0.3 2,417,394 - -0.4 2,417,403 + +0.1 2,417,414 + CCNA_02263 0.12 -1.1 2,417,414 + CCNA_02263 0.12 +0.0 2,417,464 + CCNA_02263 0.22 +0.3 2,417,525 + CCNA_02263 0.35 -1.0 2,417,532 + CCNA_02263 0.36 +0.1 2,417,593 + CCNA_02263 0.48 +0.9 2,417,603 - CCNA_02263 0.50 +0.2 2,417,606 - CCNA_02263 0.51 -1.4 2,417,631 + CCNA_02263 0.56 -0.2 2,417,638 - CCNA_02263 0.58 -1.1 2,417,639 - CCNA_02263 0.58 -0.5 2,417,661 + CCNA_02263 0.62 -0.3 2,417,679 + CCNA_02263 0.66 +0.2 2,417,752 - CCNA_02263 0.81 +0.5 2,417,799 + -0.3 2,417,802 - +0.5 2,417,807 - -0.7 2,417,809 + +0.2 2,417,809 + -0.5 2,417,826 + -1.8 2,417,868 + -2.0 2,417,876 - +0.2 2,417,923 + -0.2 2,418,005 + -0.1 2,418,045 - +2.7 2,418,126 - CCNA_02264 0.18 +0.6 2,418,182 + CCNA_02264 0.27 +0.3 2,418,182 + CCNA_02264 0.27 -0.1 2,418,205 + CCNA_02264 0.31 -1.1 2,418,213 - CCNA_02264 0.33 -0.2 2,418,213 - CCNA_02264 0.33 -0.5 2,418,245 - CCNA_02264 0.38 -0.4 2,418,325 + CCNA_02264 0.52 -1.1 2,418,342 + CCNA_02264 0.55 -1.4 2,418,368 + CCNA_02264 0.60 +0.3 2,418,381 - CCNA_02264 0.62 -0.3 2,418,415 + CCNA_02264 0.68 -1.1 2,418,415 + CCNA_02264 0.68 -0.1 2,418,415 + CCNA_02264 0.68 +0.3 2,418,423 - CCNA_02264 0.69 +0.8 2,418,423 - CCNA_02264 0.69 +0.8 2,418,428 - CCNA_02264 0.70 -0.2 2,418,520 - CCNA_02264 0.86 +0.7 2,418,525 + CCNA_02264 0.87 +0.3 2,418,535 + CCNA_02264 0.89 +0.1 2,418,543 - -1.0 2,418,543 - -0.3 2,418,543 - +0.0 2,418,598 + +0.1 2,418,649 + +0.0 2,418,670 + -0.6 2,418,684 + -0.1 2,418,684 + +0.8 2,418,689 + +0.0 2,418,692 - -0.0 2,418,759 - CCNA_02265 0.22 -0.2 2,418,856 + CCNA_02265 0.42 +0.9 2,418,880 - CCNA_02265 0.47 +0.7 2,418,898 - CCNA_02265 0.51 -1.3 2,419,003 + CCNA_02265 0.73 +0.8 2,419,004 + CCNA_02265 0.73 -0.0 2,419,058 - CCNA_02265 0.84 -0.2 2,419,086 + +0.2 2,419,101 + +0.1 2,419,116 - +0.8 2,419,215 + -0.1 2,419,242 - +0.1 2,419,248 - +0.1 2,419,264 + -0.3 2,419,296 + CCNA_02266 0.10 -0.7 2,419,324 - CCNA_02266 0.13 +0.6 2,419,376 - CCNA_02266 0.18 -2.1 2,419,385 - CCNA_02266 0.18 +0.2 2,419,385 - CCNA_02266 0.18 -0.7 2,419,435 - CCNA_02266 0.23 -2.0 2,419,435 - CCNA_02266 0.23 -0.2 2,419,524 + CCNA_02266 0.31 -0.3 2,419,537 - CCNA_02266 0.33 -0.2 2,419,537 - CCNA_02266 0.33 -0.9 2,419,553 - CCNA_02266 0.34 -0.2 2,419,553 - CCNA_02266 0.34 -0.6 2,419,566 - CCNA_02266 0.35 -1.8 2,419,595 + CCNA_02266 0.38 +0.4
Or see this region's nucleotide sequence