Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02207 and CCNA_02208 are separated by 118 nucleotides CCNA_02208 and CCNA_02209 overlap by 4 nucleotides
CCNA_02207: CCNA_02207 - hypothetical protein, at 2,354,920 to 2,355,870
_02207
CCNA_02208: CCNA_02208 - thymidylate synthase, at 2,355,989 to 2,356,828
_02208
CCNA_02209: CCNA_02209 - quinone oxidoreductase, at 2,356,825 to 2,357,847
_02209
Position (kb)
2355
2356
2357 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2355.024 kb on + strand, within CCNA_02207 at 2355.112 kb on - strand, within CCNA_02207 at 2355.160 kb on + strand, within CCNA_02207 at 2355.178 kb on - strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.279 kb on - strand, within CCNA_02207 at 2355.284 kb on - strand, within CCNA_02207 at 2355.284 kb on - strand, within CCNA_02207 at 2355.284 kb on - strand, within CCNA_02207 at 2355.310 kb on + strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.348 kb on + strand, within CCNA_02207 at 2355.423 kb on + strand, within CCNA_02207 at 2355.458 kb on + strand, within CCNA_02207 at 2355.483 kb on + strand, within CCNA_02207 at 2355.491 kb on - strand, within CCNA_02207 at 2355.491 kb on - strand, within CCNA_02207 at 2355.517 kb on - strand, within CCNA_02207 at 2355.557 kb on + strand, within CCNA_02207 at 2355.557 kb on + strand, within CCNA_02207 at 2355.565 kb on - strand, within CCNA_02207 at 2355.565 kb on - strand, within CCNA_02207 at 2355.590 kb on - strand, within CCNA_02207 at 2355.594 kb on + strand, within CCNA_02207 at 2355.603 kb on - strand, within CCNA_02207 at 2355.647 kb on - strand, within CCNA_02207 at 2355.673 kb on + strand, within CCNA_02207 at 2355.673 kb on + strand, within CCNA_02207 at 2355.674 kb on - strand, within CCNA_02207 at 2355.744 kb on - strand, within CCNA_02207 at 2355.751 kb on + strand, within CCNA_02207 at 2355.751 kb on + strand, within CCNA_02207 at 2355.751 kb on + strand, within CCNA_02207 at 2355.759 kb on - strand, within CCNA_02207 at 2355.793 kb on + strand at 2355.808 kb on - strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.840 kb on + strand at 2355.887 kb on + strand at 2355.925 kb on + strand at 2355.933 kb on - strand at 2355.933 kb on - strand at 2355.935 kb on - strand at 2355.943 kb on - strand at 2355.952 kb on + strand at 2355.952 kb on + strand at 2355.960 kb on - strand at 2356.012 kb on + strand at 2356.012 kb on + strand at 2356.864 kb on + strand at 2356.873 kb on + strand at 2356.873 kb on + strand at 2356.948 kb on + strand, within CCNA_02209 at 2356.948 kb on + strand, within CCNA_02209 at 2356.949 kb on + strand, within CCNA_02209 at 2356.979 kb on + strand, within CCNA_02209 at 2356.987 kb on - strand, within CCNA_02209 at 2357.036 kb on + strand, within CCNA_02209 at 2357.044 kb on - strand, within CCNA_02209 at 2357.044 kb on - strand, within CCNA_02209 at 2357.142 kb on - strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.284 kb on + strand, within CCNA_02209 at 2357.297 kb on + strand, within CCNA_02209 at 2357.320 kb on + strand, within CCNA_02209 at 2357.515 kb on - strand, within CCNA_02209 at 2357.540 kb on + strand, within CCNA_02209 at 2357.598 kb on + strand, within CCNA_02209 at 2357.676 kb on + strand, within CCNA_02209 at 2357.688 kb on + strand, within CCNA_02209 at 2357.786 kb on + strand at 2357.794 kb on - strand at 2357.796 kb on + strand at 2357.804 kb on - strand at 2357.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,355,024 + CCNA_02207 0.11 +0.8 2,355,112 - CCNA_02207 0.20 -0.5 2,355,160 + CCNA_02207 0.25 +0.4 2,355,178 - CCNA_02207 0.27 -0.3 2,355,196 + CCNA_02207 0.29 +0.5 2,355,196 + CCNA_02207 0.29 -0.5 2,355,196 + CCNA_02207 0.29 +0.0 2,355,196 + CCNA_02207 0.29 +0.6 2,355,196 + CCNA_02207 0.29 -0.7 2,355,196 + CCNA_02207 0.29 +0.4 2,355,196 + CCNA_02207 0.29 -0.1 2,355,196 + CCNA_02207 0.29 +0.4 2,355,196 + CCNA_02207 0.29 +1.2 2,355,196 + CCNA_02207 0.29 +1.2 2,355,196 + CCNA_02207 0.29 +0.7 2,355,196 + CCNA_02207 0.29 +0.3 2,355,196 + CCNA_02207 0.29 -0.1 2,355,196 + CCNA_02207 0.29 +0.4 2,355,196 + CCNA_02207 0.29 +0.3 2,355,196 + CCNA_02207 0.29 +0.3 2,355,196 + CCNA_02207 0.29 +0.7 2,355,196 + CCNA_02207 0.29 +0.1 2,355,196 + CCNA_02207 0.29 +0.1 2,355,196 + CCNA_02207 0.29 +0.6 2,355,204 - CCNA_02207 0.30 -1.8 2,355,204 - CCNA_02207 0.30 +0.1 2,355,204 - CCNA_02207 0.30 -0.2 2,355,204 - CCNA_02207 0.30 -0.7 2,355,204 - CCNA_02207 0.30 +0.2 2,355,204 - CCNA_02207 0.30 -1.5 2,355,204 - CCNA_02207 0.30 -0.4 2,355,204 - CCNA_02207 0.30 +1.5 2,355,204 - CCNA_02207 0.30 +1.2 2,355,204 - CCNA_02207 0.30 -0.7 2,355,204 - CCNA_02207 0.30 +0.3 2,355,204 - CCNA_02207 0.30 -1.0 2,355,204 - CCNA_02207 0.30 +0.3 2,355,204 - CCNA_02207 0.30 -0.1 2,355,204 - CCNA_02207 0.30 -0.2 2,355,276 + CCNA_02207 0.37 +0.6 2,355,276 + CCNA_02207 0.37 +0.2 2,355,276 + CCNA_02207 0.37 +0.5 2,355,276 + CCNA_02207 0.37 -0.2 2,355,276 + CCNA_02207 0.37 -0.6 2,355,276 + CCNA_02207 0.37 -0.4 2,355,276 + CCNA_02207 0.37 -0.8 2,355,279 - CCNA_02207 0.38 -0.5 2,355,284 - CCNA_02207 0.38 +0.6 2,355,284 - CCNA_02207 0.38 -0.4 2,355,284 - CCNA_02207 0.38 -0.6 2,355,310 + CCNA_02207 0.41 -0.1 2,355,318 - CCNA_02207 0.42 +0.4 2,355,318 - CCNA_02207 0.42 -0.2 2,355,318 - CCNA_02207 0.42 +0.2 2,355,348 + CCNA_02207 0.45 +0.1 2,355,423 + CCNA_02207 0.53 +0.1 2,355,458 + CCNA_02207 0.57 +0.1 2,355,483 + CCNA_02207 0.59 -0.1 2,355,491 - CCNA_02207 0.60 -0.7 2,355,491 - CCNA_02207 0.60 -0.9 2,355,517 - CCNA_02207 0.63 -0.3 2,355,557 + CCNA_02207 0.67 -0.5 2,355,557 + CCNA_02207 0.67 +0.1 2,355,565 - CCNA_02207 0.68 -2.3 2,355,565 - CCNA_02207 0.68 -0.6 2,355,590 - CCNA_02207 0.70 -3.0 2,355,594 + CCNA_02207 0.71 +0.6 2,355,603 - CCNA_02207 0.72 -2.6 2,355,647 - CCNA_02207 0.76 +0.1 2,355,673 + CCNA_02207 0.79 +1.6 2,355,673 + CCNA_02207 0.79 +0.5 2,355,674 - CCNA_02207 0.79 +0.6 2,355,744 - CCNA_02207 0.87 -0.8 2,355,751 + CCNA_02207 0.87 +0.7 2,355,751 + CCNA_02207 0.87 +0.2 2,355,751 + CCNA_02207 0.87 +0.5 2,355,759 - CCNA_02207 0.88 -0.4 2,355,793 + +0.1 2,355,808 - -0.9 2,355,838 + +0.5 2,355,838 + +0.3 2,355,838 + -0.9 2,355,838 + -0.4 2,355,838 + +0.4 2,355,840 + +0.3 2,355,887 + +0.5 2,355,925 + -0.9 2,355,933 - +0.4 2,355,933 - +0.0 2,355,935 - +0.4 2,355,943 - +0.0 2,355,952 + +0.6 2,355,952 + +0.1 2,355,960 - -1.1 2,356,012 + +0.4 2,356,012 + -0.0 2,356,864 + +0.9 2,356,873 + -0.8 2,356,873 + +0.3 2,356,948 + CCNA_02209 0.12 +0.8 2,356,948 + CCNA_02209 0.12 +1.0 2,356,949 + CCNA_02209 0.12 +0.1 2,356,979 + CCNA_02209 0.15 -0.2 2,356,987 - CCNA_02209 0.16 -1.5 2,357,036 + CCNA_02209 0.21 +0.1 2,357,044 - CCNA_02209 0.21 +0.2 2,357,044 - CCNA_02209 0.21 -1.9 2,357,142 - CCNA_02209 0.31 -0.3 2,357,180 + CCNA_02209 0.35 +0.2 2,357,180 + CCNA_02209 0.35 -0.1 2,357,188 - CCNA_02209 0.35 -0.4 2,357,188 - CCNA_02209 0.35 +1.3 2,357,188 - CCNA_02209 0.35 +0.2 2,357,188 - CCNA_02209 0.35 -1.0 2,357,188 - CCNA_02209 0.35 -0.4 2,357,284 + CCNA_02209 0.45 +0.1 2,357,297 + CCNA_02209 0.46 -0.2 2,357,320 + CCNA_02209 0.48 -1.2 2,357,515 - CCNA_02209 0.67 -1.0 2,357,540 + CCNA_02209 0.70 +0.4 2,357,598 + CCNA_02209 0.76 +0.2 2,357,676 + CCNA_02209 0.83 -0.2 2,357,688 + CCNA_02209 0.84 +0.2 2,357,786 + -1.8 2,357,794 - -1.4 2,357,796 + -0.9 2,357,804 - -0.0 2,357,823 - +0.7
Or see this region's nucleotide sequence