Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02208

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02207 and CCNA_02208 are separated by 118 nucleotidesCCNA_02208 and CCNA_02209 overlap by 4 nucleotides CCNA_02207: CCNA_02207 - hypothetical protein, at 2,354,920 to 2,355,870 _02207 CCNA_02208: CCNA_02208 - thymidylate synthase, at 2,355,989 to 2,356,828 _02208 CCNA_02209: CCNA_02209 - quinone oxidoreductase, at 2,356,825 to 2,357,847 _02209 Position (kb) 2355 2356 2357Strain fitness (log2 ratio) -3 -2 -1 0 1at 2355.024 kb on + strand, within CCNA_02207at 2355.112 kb on - strand, within CCNA_02207at 2355.160 kb on + strand, within CCNA_02207at 2355.178 kb on - strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.279 kb on - strand, within CCNA_02207at 2355.284 kb on - strand, within CCNA_02207at 2355.284 kb on - strand, within CCNA_02207at 2355.284 kb on - strand, within CCNA_02207at 2355.310 kb on + strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.348 kb on + strand, within CCNA_02207at 2355.423 kb on + strand, within CCNA_02207at 2355.458 kb on + strand, within CCNA_02207at 2355.483 kb on + strand, within CCNA_02207at 2355.491 kb on - strand, within CCNA_02207at 2355.491 kb on - strand, within CCNA_02207at 2355.517 kb on - strand, within CCNA_02207at 2355.557 kb on + strand, within CCNA_02207at 2355.557 kb on + strand, within CCNA_02207at 2355.565 kb on - strand, within CCNA_02207at 2355.565 kb on - strand, within CCNA_02207at 2355.590 kb on - strand, within CCNA_02207at 2355.594 kb on + strand, within CCNA_02207at 2355.603 kb on - strand, within CCNA_02207at 2355.647 kb on - strand, within CCNA_02207at 2355.673 kb on + strand, within CCNA_02207at 2355.673 kb on + strand, within CCNA_02207at 2355.674 kb on - strand, within CCNA_02207at 2355.744 kb on - strand, within CCNA_02207at 2355.751 kb on + strand, within CCNA_02207at 2355.751 kb on + strand, within CCNA_02207at 2355.751 kb on + strand, within CCNA_02207at 2355.759 kb on - strand, within CCNA_02207at 2355.793 kb on + strandat 2355.808 kb on - strandat 2355.838 kb on + strandat 2355.838 kb on + strandat 2355.838 kb on + strandat 2355.838 kb on + strandat 2355.838 kb on + strandat 2355.840 kb on + strandat 2355.887 kb on + strandat 2355.925 kb on + strandat 2355.933 kb on - strandat 2355.933 kb on - strandat 2355.935 kb on - strandat 2355.943 kb on - strandat 2355.952 kb on + strandat 2355.952 kb on + strandat 2355.960 kb on - strandat 2356.012 kb on + strandat 2356.012 kb on + strandat 2356.864 kb on + strandat 2356.873 kb on + strandat 2356.873 kb on + strandat 2356.948 kb on + strand, within CCNA_02209at 2356.948 kb on + strand, within CCNA_02209at 2356.949 kb on + strand, within CCNA_02209at 2356.979 kb on + strand, within CCNA_02209at 2356.987 kb on - strand, within CCNA_02209at 2357.036 kb on + strand, within CCNA_02209at 2357.044 kb on - strand, within CCNA_02209at 2357.044 kb on - strand, within CCNA_02209at 2357.142 kb on - strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.284 kb on + strand, within CCNA_02209at 2357.297 kb on + strand, within CCNA_02209at 2357.320 kb on + strand, within CCNA_02209at 2357.515 kb on - strand, within CCNA_02209at 2357.540 kb on + strand, within CCNA_02209at 2357.598 kb on + strand, within CCNA_02209at 2357.676 kb on + strand, within CCNA_02209at 2357.688 kb on + strand, within CCNA_02209at 2357.786 kb on + strandat 2357.794 kb on - strandat 2357.796 kb on + strandat 2357.804 kb on - strandat 2357.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,355,024 + CCNA_02207 0.11 +0.8
2,355,112 - CCNA_02207 0.20 -0.5
2,355,160 + CCNA_02207 0.25 +0.4
2,355,178 - CCNA_02207 0.27 -0.3
2,355,196 + CCNA_02207 0.29 +0.5
2,355,196 + CCNA_02207 0.29 -0.5
2,355,196 + CCNA_02207 0.29 +0.0
2,355,196 + CCNA_02207 0.29 +0.6
2,355,196 + CCNA_02207 0.29 -0.7
2,355,196 + CCNA_02207 0.29 +0.4
2,355,196 + CCNA_02207 0.29 -0.1
2,355,196 + CCNA_02207 0.29 +0.4
2,355,196 + CCNA_02207 0.29 +1.2
2,355,196 + CCNA_02207 0.29 +1.2
2,355,196 + CCNA_02207 0.29 +0.7
2,355,196 + CCNA_02207 0.29 +0.3
2,355,196 + CCNA_02207 0.29 -0.1
2,355,196 + CCNA_02207 0.29 +0.4
2,355,196 + CCNA_02207 0.29 +0.3
2,355,196 + CCNA_02207 0.29 +0.3
2,355,196 + CCNA_02207 0.29 +0.7
2,355,196 + CCNA_02207 0.29 +0.1
2,355,196 + CCNA_02207 0.29 +0.1
2,355,196 + CCNA_02207 0.29 +0.6
2,355,204 - CCNA_02207 0.30 -1.8
2,355,204 - CCNA_02207 0.30 +0.1
2,355,204 - CCNA_02207 0.30 -0.2
2,355,204 - CCNA_02207 0.30 -0.7
2,355,204 - CCNA_02207 0.30 +0.2
2,355,204 - CCNA_02207 0.30 -1.5
2,355,204 - CCNA_02207 0.30 -0.4
2,355,204 - CCNA_02207 0.30 +1.5
2,355,204 - CCNA_02207 0.30 +1.2
2,355,204 - CCNA_02207 0.30 -0.7
2,355,204 - CCNA_02207 0.30 +0.3
2,355,204 - CCNA_02207 0.30 -1.0
2,355,204 - CCNA_02207 0.30 +0.3
2,355,204 - CCNA_02207 0.30 -0.1
2,355,204 - CCNA_02207 0.30 -0.2
2,355,276 + CCNA_02207 0.37 +0.6
2,355,276 + CCNA_02207 0.37 +0.2
2,355,276 + CCNA_02207 0.37 +0.5
2,355,276 + CCNA_02207 0.37 -0.2
2,355,276 + CCNA_02207 0.37 -0.6
2,355,276 + CCNA_02207 0.37 -0.4
2,355,276 + CCNA_02207 0.37 -0.8
2,355,279 - CCNA_02207 0.38 -0.5
2,355,284 - CCNA_02207 0.38 +0.6
2,355,284 - CCNA_02207 0.38 -0.4
2,355,284 - CCNA_02207 0.38 -0.6
2,355,310 + CCNA_02207 0.41 -0.1
2,355,318 - CCNA_02207 0.42 +0.4
2,355,318 - CCNA_02207 0.42 -0.2
2,355,318 - CCNA_02207 0.42 +0.2
2,355,348 + CCNA_02207 0.45 +0.1
2,355,423 + CCNA_02207 0.53 +0.1
2,355,458 + CCNA_02207 0.57 +0.1
2,355,483 + CCNA_02207 0.59 -0.1
2,355,491 - CCNA_02207 0.60 -0.7
2,355,491 - CCNA_02207 0.60 -0.9
2,355,517 - CCNA_02207 0.63 -0.3
2,355,557 + CCNA_02207 0.67 -0.5
2,355,557 + CCNA_02207 0.67 +0.1
2,355,565 - CCNA_02207 0.68 -2.3
2,355,565 - CCNA_02207 0.68 -0.6
2,355,590 - CCNA_02207 0.70 -3.0
2,355,594 + CCNA_02207 0.71 +0.6
2,355,603 - CCNA_02207 0.72 -2.6
2,355,647 - CCNA_02207 0.76 +0.1
2,355,673 + CCNA_02207 0.79 +1.6
2,355,673 + CCNA_02207 0.79 +0.5
2,355,674 - CCNA_02207 0.79 +0.6
2,355,744 - CCNA_02207 0.87 -0.8
2,355,751 + CCNA_02207 0.87 +0.7
2,355,751 + CCNA_02207 0.87 +0.2
2,355,751 + CCNA_02207 0.87 +0.5
2,355,759 - CCNA_02207 0.88 -0.4
2,355,793 + +0.1
2,355,808 - -0.9
2,355,838 + +0.5
2,355,838 + +0.3
2,355,838 + -0.9
2,355,838 + -0.4
2,355,838 + +0.4
2,355,840 + +0.3
2,355,887 + +0.5
2,355,925 + -0.9
2,355,933 - +0.4
2,355,933 - +0.0
2,355,935 - +0.4
2,355,943 - +0.0
2,355,952 + +0.6
2,355,952 + +0.1
2,355,960 - -1.1
2,356,012 + +0.4
2,356,012 + -0.0
2,356,864 + +0.9
2,356,873 + -0.8
2,356,873 + +0.3
2,356,948 + CCNA_02209 0.12 +0.8
2,356,948 + CCNA_02209 0.12 +1.0
2,356,949 + CCNA_02209 0.12 +0.1
2,356,979 + CCNA_02209 0.15 -0.2
2,356,987 - CCNA_02209 0.16 -1.5
2,357,036 + CCNA_02209 0.21 +0.1
2,357,044 - CCNA_02209 0.21 +0.2
2,357,044 - CCNA_02209 0.21 -1.9
2,357,142 - CCNA_02209 0.31 -0.3
2,357,180 + CCNA_02209 0.35 +0.2
2,357,180 + CCNA_02209 0.35 -0.1
2,357,188 - CCNA_02209 0.35 -0.4
2,357,188 - CCNA_02209 0.35 +1.3
2,357,188 - CCNA_02209 0.35 +0.2
2,357,188 - CCNA_02209 0.35 -1.0
2,357,188 - CCNA_02209 0.35 -0.4
2,357,284 + CCNA_02209 0.45 +0.1
2,357,297 + CCNA_02209 0.46 -0.2
2,357,320 + CCNA_02209 0.48 -1.2
2,357,515 - CCNA_02209 0.67 -1.0
2,357,540 + CCNA_02209 0.70 +0.4
2,357,598 + CCNA_02209 0.76 +0.2
2,357,676 + CCNA_02209 0.83 -0.2
2,357,688 + CCNA_02209 0.84 +0.2
2,357,786 + -1.8
2,357,794 - -1.4
2,357,796 + -0.9
2,357,804 - -0.0
2,357,823 - +0.7

Or see this region's nucleotide sequence