Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02180 and CCNA_02181 are separated by 87 nucleotides CCNA_02181 and CCNA_02182 overlap by 4 nucleotides CCNA_02182 and CCNA_02183 overlap by 20 nucleotides
CCNA_02180: CCNA_02180 - iron-sulfur cluster assembly/repair protein ApbC, at 2,331,553 to 2,332,653
_02180
CCNA_02181: CCNA_02181 - phosphatase/phosphohexomutase family protein, at 2,332,741 to 2,333,406
_02181
CCNA_02182: CCNA_02182 - phosphoserine phosphatase, at 2,333,403 to 2,334,281
_02182
CCNA_02183: CCNA_02183 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 2,334,262 to 2,335,152
_02183
Position (kb)
2332
2333
2334 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2332.354 kb on - strand, within CCNA_02180 at 2332.718 kb on - strand at 2332.744 kb on + strand at 2332.799 kb on + strand at 2332.801 kb on - strand at 2332.850 kb on - strand, within CCNA_02181 at 2332.850 kb on - strand, within CCNA_02181 at 2333.008 kb on + strand, within CCNA_02181 at 2333.022 kb on + strand, within CCNA_02181 at 2333.030 kb on - strand, within CCNA_02181 at 2333.041 kb on + strand, within CCNA_02181 at 2333.044 kb on - strand, within CCNA_02181 at 2333.070 kb on + strand, within CCNA_02181 at 2333.088 kb on + strand, within CCNA_02181 at 2333.096 kb on - strand, within CCNA_02181 at 2333.103 kb on - strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.199 kb on - strand, within CCNA_02181 at 2333.199 kb on - strand, within CCNA_02181 at 2333.199 kb on - strand, within CCNA_02181 at 2333.214 kb on - strand, within CCNA_02181 at 2333.229 kb on + strand, within CCNA_02181 at 2333.233 kb on + strand, within CCNA_02181 at 2333.245 kb on - strand, within CCNA_02181 at 2333.259 kb on - strand, within CCNA_02181 at 2333.290 kb on + strand, within CCNA_02181 at 2333.296 kb on + strand, within CCNA_02181 at 2333.345 kb on + strand at 2333.376 kb on - strand at 2333.381 kb on + strand at 2333.422 kb on + strand at 2333.423 kb on - strand at 2333.430 kb on - strand at 2333.432 kb on + strand at 2333.465 kb on + strand at 2333.478 kb on - strand at 2333.478 kb on - strand at 2333.520 kb on + strand, within CCNA_02182 at 2333.570 kb on + strand, within CCNA_02182 at 2333.578 kb on + strand, within CCNA_02182 at 2333.594 kb on + strand, within CCNA_02182 at 2333.594 kb on + strand, within CCNA_02182 at 2333.597 kb on - strand, within CCNA_02182 at 2333.663 kb on - strand, within CCNA_02182 at 2333.670 kb on + strand, within CCNA_02182 at 2333.677 kb on + strand, within CCNA_02182 at 2333.678 kb on - strand, within CCNA_02182 at 2333.709 kb on + strand, within CCNA_02182 at 2333.717 kb on - strand, within CCNA_02182 at 2333.772 kb on - strand, within CCNA_02182 at 2333.790 kb on - strand, within CCNA_02182 at 2333.811 kb on - strand, within CCNA_02182 at 2333.846 kb on + strand, within CCNA_02182 at 2333.898 kb on - strand, within CCNA_02182 at 2334.018 kb on - strand, within CCNA_02182 at 2334.042 kb on + strand, within CCNA_02182 at 2334.127 kb on + strand, within CCNA_02182 at 2334.161 kb on + strand, within CCNA_02182 at 2334.162 kb on + strand, within CCNA_02182 at 2334.163 kb on + strand, within CCNA_02182 at 2334.170 kb on - strand, within CCNA_02182 at 2334.170 kb on - strand, within CCNA_02182 at 2334.170 kb on - strand, within CCNA_02182 at 2334.178 kb on + strand, within CCNA_02182 at 2334.183 kb on + strand, within CCNA_02182 at 2334.193 kb on + strand, within CCNA_02182 at 2334.215 kb on + strand at 2334.223 kb on + strand at 2334.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,332,354 - CCNA_02180 0.73 +0.1 2,332,718 - +0.3 2,332,744 + -0.9 2,332,799 + -0.1 2,332,801 - +0.6 2,332,850 - CCNA_02181 0.16 +0.8 2,332,850 - CCNA_02181 0.16 -0.2 2,333,008 + CCNA_02181 0.40 -0.3 2,333,022 + CCNA_02181 0.42 -1.1 2,333,030 - CCNA_02181 0.43 -1.1 2,333,041 + CCNA_02181 0.45 -0.2 2,333,044 - CCNA_02181 0.45 -0.3 2,333,070 + CCNA_02181 0.49 -1.6 2,333,088 + CCNA_02181 0.52 -0.6 2,333,096 - CCNA_02181 0.53 +0.3 2,333,103 - CCNA_02181 0.54 -0.4 2,333,171 + CCNA_02181 0.65 -0.5 2,333,171 + CCNA_02181 0.65 -1.5 2,333,171 + CCNA_02181 0.65 +0.4 2,333,179 - CCNA_02181 0.66 +1.1 2,333,179 - CCNA_02181 0.66 -0.1 2,333,179 - CCNA_02181 0.66 +0.0 2,333,179 - CCNA_02181 0.66 +1.2 2,333,179 - CCNA_02181 0.66 -0.1 2,333,179 - CCNA_02181 0.66 -0.2 2,333,179 - CCNA_02181 0.66 +1.0 2,333,179 - CCNA_02181 0.66 +0.3 2,333,199 - CCNA_02181 0.69 +0.2 2,333,199 - CCNA_02181 0.69 +0.3 2,333,199 - CCNA_02181 0.69 +0.7 2,333,214 - CCNA_02181 0.71 +0.4 2,333,229 + CCNA_02181 0.73 -0.4 2,333,233 + CCNA_02181 0.74 +0.5 2,333,245 - CCNA_02181 0.76 +0.2 2,333,259 - CCNA_02181 0.78 +1.1 2,333,290 + CCNA_02181 0.82 +2.1 2,333,296 + CCNA_02181 0.83 -1.4 2,333,345 + +0.7 2,333,376 - +0.6 2,333,381 + -1.1 2,333,422 + -1.4 2,333,423 - +0.0 2,333,430 - -0.0 2,333,432 + +0.9 2,333,465 + +2.3 2,333,478 - +0.3 2,333,478 - +0.4 2,333,520 + CCNA_02182 0.13 -0.5 2,333,570 + CCNA_02182 0.19 +1.3 2,333,578 + CCNA_02182 0.20 -0.4 2,333,594 + CCNA_02182 0.22 -0.9 2,333,594 + CCNA_02182 0.22 -0.5 2,333,597 - CCNA_02182 0.22 +0.1 2,333,663 - CCNA_02182 0.30 +0.2 2,333,670 + CCNA_02182 0.30 -2.2 2,333,677 + CCNA_02182 0.31 -1.0 2,333,678 - CCNA_02182 0.31 +0.7 2,333,709 + CCNA_02182 0.35 -0.6 2,333,717 - CCNA_02182 0.36 +0.2 2,333,772 - CCNA_02182 0.42 +0.1 2,333,790 - CCNA_02182 0.44 +0.0 2,333,811 - CCNA_02182 0.46 -0.9 2,333,846 + CCNA_02182 0.50 -1.1 2,333,898 - CCNA_02182 0.56 +0.3 2,334,018 - CCNA_02182 0.70 +0.3 2,334,042 + CCNA_02182 0.73 -0.9 2,334,127 + CCNA_02182 0.82 +0.5 2,334,161 + CCNA_02182 0.86 -0.8 2,334,162 + CCNA_02182 0.86 +0.1 2,334,163 + CCNA_02182 0.86 -0.1 2,334,170 - CCNA_02182 0.87 +0.1 2,334,170 - CCNA_02182 0.87 -0.4 2,334,170 - CCNA_02182 0.87 +0.3 2,334,178 + CCNA_02182 0.88 +0.4 2,334,183 + CCNA_02182 0.89 -2.1 2,334,193 + CCNA_02182 0.90 +0.5 2,334,215 + +0.2 2,334,223 + +0.2 2,334,223 + +0.3
Or see this region's nucleotide sequence