Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02087 and CCNA_02088 are separated by 88 nucleotides CCNA_02088 and CCNA_02089 are separated by 4 nucleotides CCNA_02089 and CCNA_02090 overlap by 1 nucleotides CCNA_02090 and CCNA_02091 are separated by 48 nucleotides
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
CCNA_02088: CCNA_02088 - HesB protein family, at 2,237,630 to 2,237,962
_02088
CCNA_02089: CCNA_02089 - hypothetical protein, at 2,237,967 to 2,238,341
_02089
CCNA_02090: CCNA_02090 - exodeoxyribonuclease III, at 2,238,341 to 2,239,129
_02090
CCNA_02091: CCNA_02091 - hypothetical protein, at 2,239,178 to 2,240,098
_02091
Position (kb)
2237
2238
2239 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2236.988 kb on - strand, within CCNA_02087 at 2237.018 kb on - strand, within CCNA_02087 at 2237.021 kb on + strand, within CCNA_02087 at 2237.029 kb on - strand, within CCNA_02087 at 2237.039 kb on - strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.092 kb on - strand, within CCNA_02087 at 2237.096 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.111 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.118 kb on + strand, within CCNA_02087 at 2237.121 kb on - strand, within CCNA_02087 at 2237.137 kb on - strand, within CCNA_02087 at 2237.143 kb on + strand, within CCNA_02087 at 2237.144 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.228 kb on - strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.252 kb on + strand, within CCNA_02087 at 2237.259 kb on - strand, within CCNA_02087 at 2237.259 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.294 kb on - strand, within CCNA_02087 at 2237.319 kb on + strand, within CCNA_02087 at 2237.319 kb on + strand, within CCNA_02087 at 2237.327 kb on - strand, within CCNA_02087 at 2237.334 kb on - strand, within CCNA_02087 at 2237.334 kb on - strand, within CCNA_02087 at 2237.368 kb on + strand, within CCNA_02087 at 2237.371 kb on - strand, within CCNA_02087 at 2237.376 kb on - strand, within CCNA_02087 at 2237.413 kb on - strand, within CCNA_02087 at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.439 kb on + strand at 2237.447 kb on - strand at 2237.447 kb on - strand at 2237.452 kb on + strand at 2237.463 kb on + strand at 2237.471 kb on - strand at 2237.529 kb on + strand at 2237.529 kb on - strand at 2237.539 kb on - strand at 2237.566 kb on + strand at 2237.573 kb on - strand at 2237.593 kb on - strand at 2237.599 kb on + strand at 2237.603 kb on - strand at 2237.607 kb on - strand at 2237.635 kb on - strand at 2237.635 kb on - strand at 2237.651 kb on - strand at 2237.682 kb on - strand, within CCNA_02088 at 2237.693 kb on + strand, within CCNA_02088 at 2237.706 kb on + strand, within CCNA_02088 at 2237.707 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.714 kb on - strand, within CCNA_02088 at 2237.736 kb on - strand, within CCNA_02088 at 2237.778 kb on + strand, within CCNA_02088 at 2237.794 kb on + strand, within CCNA_02088 at 2237.949 kb on + strand at 2237.978 kb on - strand at 2237.982 kb on + strand at 2238.007 kb on + strand, within CCNA_02089 at 2238.007 kb on + strand, within CCNA_02089 at 2238.007 kb on + strand, within CCNA_02089 at 2238.015 kb on - strand, within CCNA_02089 at 2238.018 kb on + strand, within CCNA_02089 at 2238.034 kb on + strand, within CCNA_02089 at 2238.042 kb on - strand, within CCNA_02089 at 2238.063 kb on - strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.146 kb on + strand, within CCNA_02089 at 2238.154 kb on - strand, within CCNA_02089 at 2238.174 kb on + strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.192 kb on + strand, within CCNA_02089 at 2238.200 kb on - strand, within CCNA_02089 at 2238.205 kb on - strand, within CCNA_02089 at 2238.252 kb on + strand, within CCNA_02089 at 2238.276 kb on + strand, within CCNA_02089 at 2238.306 kb on - strand at 2238.335 kb on - strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.159 kb on + strand at 2239.164 kb on + strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.167 kb on - strand at 2239.174 kb on - strand at 2239.176 kb on + strand at 2239.234 kb on - strand at 2239.243 kb on - strand at 2239.243 kb on - strand at 2239.245 kb on - strand at 2239.273 kb on - strand, within CCNA_02091 at 2239.292 kb on + strand, within CCNA_02091 at 2239.301 kb on + strand, within CCNA_02091 at 2239.301 kb on + strand, within CCNA_02091 at 2239.309 kb on - strand, within CCNA_02091 at 2239.309 kb on - strand, within CCNA_02091 at 2239.311 kb on - strand, within CCNA_02091
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,236,988 - CCNA_02087 0.53 -0.2 2,237,018 - CCNA_02087 0.56 +0.6 2,237,021 + CCNA_02087 0.56 -1.3 2,237,029 - CCNA_02087 0.57 -0.1 2,237,039 - CCNA_02087 0.58 +1.8 2,237,083 + CCNA_02087 0.61 -0.4 2,237,083 + CCNA_02087 0.61 -0.2 2,237,083 + CCNA_02087 0.61 -0.9 2,237,092 - CCNA_02087 0.62 -0.7 2,237,096 - CCNA_02087 0.62 -2.4 2,237,097 - CCNA_02087 0.62 +0.5 2,237,097 - CCNA_02087 0.62 -0.5 2,237,111 - CCNA_02087 0.64 -0.2 2,237,116 - CCNA_02087 0.64 -0.6 2,237,116 - CCNA_02087 0.64 -0.3 2,237,118 + CCNA_02087 0.64 -1.4 2,237,121 - CCNA_02087 0.64 +0.1 2,237,137 - CCNA_02087 0.66 -0.2 2,237,143 + CCNA_02087 0.66 -0.9 2,237,144 + CCNA_02087 0.66 -0.1 2,237,227 + CCNA_02087 0.73 -0.2 2,237,227 + CCNA_02087 0.73 -0.9 2,237,227 + CCNA_02087 0.73 -1.6 2,237,228 - CCNA_02087 0.74 -1.5 2,237,235 - CCNA_02087 0.74 +0.1 2,237,235 - CCNA_02087 0.74 -0.3 2,237,252 + CCNA_02087 0.76 -0.1 2,237,259 - CCNA_02087 0.76 -0.3 2,237,259 - CCNA_02087 0.76 -0.9 2,237,283 - CCNA_02087 0.78 -0.8 2,237,283 - CCNA_02087 0.78 -0.6 2,237,283 - CCNA_02087 0.78 +0.4 2,237,294 - CCNA_02087 0.79 -0.5 2,237,319 + CCNA_02087 0.81 -0.5 2,237,319 + CCNA_02087 0.81 -0.0 2,237,327 - CCNA_02087 0.82 +0.5 2,237,334 - CCNA_02087 0.82 -0.7 2,237,334 - CCNA_02087 0.82 -0.3 2,237,368 + CCNA_02087 0.85 -0.8 2,237,371 - CCNA_02087 0.86 -0.2 2,237,376 - CCNA_02087 0.86 +0.2 2,237,413 - CCNA_02087 0.89 +0.5 2,237,439 + -0.0 2,237,439 + -1.4 2,237,439 + -0.3 2,237,439 + -0.2 2,237,447 - +0.8 2,237,447 - +0.4 2,237,452 + +0.4 2,237,463 + -0.2 2,237,471 - +0.1 2,237,529 + -0.3 2,237,529 - +0.4 2,237,539 - +0.1 2,237,566 + +0.3 2,237,573 - -0.9 2,237,593 - -0.5 2,237,599 + +0.8 2,237,603 - +0.4 2,237,607 - -2.3 2,237,635 - -0.7 2,237,635 - -0.7 2,237,651 - -0.8 2,237,682 - CCNA_02088 0.16 -0.8 2,237,693 + CCNA_02088 0.19 +0.7 2,237,706 + CCNA_02088 0.23 -0.2 2,237,707 - CCNA_02088 0.23 -1.0 2,237,714 - CCNA_02088 0.25 +0.0 2,237,714 - CCNA_02088 0.25 -1.0 2,237,714 - CCNA_02088 0.25 -1.6 2,237,714 - CCNA_02088 0.25 -1.4 2,237,736 - CCNA_02088 0.32 -0.2 2,237,778 + CCNA_02088 0.44 -0.4 2,237,794 + CCNA_02088 0.49 -0.4 2,237,949 + -0.0 2,237,978 - -0.5 2,237,982 + -0.9 2,238,007 + CCNA_02089 0.11 +0.2 2,238,007 + CCNA_02089 0.11 +0.4 2,238,007 + CCNA_02089 0.11 +0.5 2,238,015 - CCNA_02089 0.13 -0.9 2,238,018 + CCNA_02089 0.14 -0.1 2,238,034 + CCNA_02089 0.18 +0.0 2,238,042 - CCNA_02089 0.20 +0.1 2,238,063 - CCNA_02089 0.26 +0.5 2,238,103 + CCNA_02089 0.36 +0.3 2,238,103 + CCNA_02089 0.36 +0.4 2,238,103 + CCNA_02089 0.36 -0.2 2,238,103 + CCNA_02089 0.36 +0.5 2,238,103 + CCNA_02089 0.36 -2.0 2,238,103 + CCNA_02089 0.36 +0.0 2,238,103 + CCNA_02089 0.36 -0.6 2,238,103 + CCNA_02089 0.36 -1.6 2,238,103 + CCNA_02089 0.36 +0.1 2,238,103 + CCNA_02089 0.36 +0.4 2,238,103 + CCNA_02089 0.36 -0.8 2,238,103 + CCNA_02089 0.36 -0.2 2,238,103 + CCNA_02089 0.36 +0.3 2,238,103 + CCNA_02089 0.36 +0.2 2,238,103 + CCNA_02089 0.36 +0.3 2,238,103 + CCNA_02089 0.36 +0.5 2,238,111 - CCNA_02089 0.38 -0.6 2,238,111 - CCNA_02089 0.38 -1.4 2,238,111 - CCNA_02089 0.38 -0.7 2,238,111 - CCNA_02089 0.38 -0.2 2,238,111 - CCNA_02089 0.38 -0.3 2,238,111 - CCNA_02089 0.38 -0.4 2,238,146 + CCNA_02089 0.48 -1.1 2,238,154 - CCNA_02089 0.50 +1.0 2,238,174 + CCNA_02089 0.55 +0.9 2,238,182 - CCNA_02089 0.57 -0.4 2,238,182 - CCNA_02089 0.57 +0.6 2,238,192 + CCNA_02089 0.60 -1.3 2,238,200 - CCNA_02089 0.62 +0.6 2,238,205 - CCNA_02089 0.63 -0.4 2,238,252 + CCNA_02089 0.76 +0.5 2,238,276 + CCNA_02089 0.82 -0.6 2,238,306 - +1.4 2,238,335 - +0.1 2,239,159 + -1.6 2,239,159 + -0.0 2,239,159 + +1.0 2,239,159 + +0.0 2,239,159 + +0.0 2,239,159 + -0.1 2,239,159 + -0.2 2,239,159 + +0.2 2,239,159 + -0.0 2,239,159 + +0.2 2,239,159 + +1.0 2,239,159 + +0.4 2,239,159 + -0.4 2,239,159 + -0.4 2,239,159 + -0.3 2,239,159 + -0.6 2,239,159 + +0.6 2,239,159 + +0.2 2,239,164 + +0.3 2,239,167 - -0.8 2,239,167 - -0.5 2,239,167 - +2.0 2,239,167 - -0.4 2,239,167 - -0.8 2,239,167 - +1.2 2,239,167 - +1.6 2,239,167 - -0.6 2,239,167 - -0.2 2,239,167 - -0.8 2,239,167 - +0.4 2,239,167 - +0.5 2,239,174 - +0.2 2,239,176 + +0.3 2,239,234 - +0.0 2,239,243 - -0.5 2,239,243 - -0.6 2,239,245 - -1.2 2,239,273 - CCNA_02091 0.10 +0.8 2,239,292 + CCNA_02091 0.12 +0.2 2,239,301 + CCNA_02091 0.13 +0.2 2,239,301 + CCNA_02091 0.13 +1.7 2,239,309 - CCNA_02091 0.14 -0.4 2,239,309 - CCNA_02091 0.14 -1.7 2,239,311 - CCNA_02091 0.14 +0.0
Or see this region's nucleotide sequence