Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02085 and CCNA_02086 overlap by 4 nucleotides CCNA_02086 and CCNA_02087 are separated by 169 nucleotides
CCNA_02085: CCNA_02085 - anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase, at 2,234,353 to 2,235,390
_02085
CCNA_02086: CCNA_02086 - cell division protein FtsN, at 2,235,387 to 2,236,187
_02086
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
Position (kb)
2235
2236
2237 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2234.395 kb on + strand at 2234.403 kb on - strand at 2234.437 kb on + strand at 2234.445 kb on - strand at 2234.445 kb on - strand at 2234.501 kb on + strand, within CCNA_02085 at 2234.503 kb on - strand, within CCNA_02085 at 2234.538 kb on - strand, within CCNA_02085 at 2234.563 kb on + strand, within CCNA_02085 at 2234.585 kb on - strand, within CCNA_02085 at 2234.610 kb on + strand, within CCNA_02085 at 2234.618 kb on - strand, within CCNA_02085 at 2234.618 kb on - strand, within CCNA_02085 at 2234.620 kb on + strand, within CCNA_02085 at 2234.630 kb on - strand, within CCNA_02085 at 2234.804 kb on - strand, within CCNA_02085 at 2234.809 kb on - strand, within CCNA_02085 at 2234.827 kb on + strand, within CCNA_02085 at 2234.858 kb on - strand, within CCNA_02085 at 2234.914 kb on + strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.939 kb on - strand, within CCNA_02085 at 2235.017 kb on - strand, within CCNA_02085 at 2235.056 kb on + strand, within CCNA_02085 at 2235.063 kb on + strand, within CCNA_02085 at 2235.225 kb on + strand, within CCNA_02085 at 2235.233 kb on - strand, within CCNA_02085 at 2235.279 kb on + strand, within CCNA_02085 at 2235.287 kb on + strand at 2235.292 kb on + strand at 2235.293 kb on - strand at 2235.295 kb on - strand at 2235.302 kb on - strand at 2235.349 kb on + strand at 2235.357 kb on - strand at 2235.357 kb on - strand at 2235.374 kb on + strand at 2236.227 kb on - strand at 2236.237 kb on + strand at 2236.252 kb on + strand at 2236.262 kb on + strand at 2236.265 kb on - strand at 2236.278 kb on + strand at 2236.286 kb on - strand at 2236.286 kb on - strand at 2236.295 kb on - strand at 2236.295 kb on - strand at 2236.310 kb on + strand at 2236.313 kb on + strand at 2236.318 kb on - strand at 2236.345 kb on + strand at 2236.348 kb on - strand at 2236.350 kb on + strand at 2236.368 kb on - strand at 2236.368 kb on - strand at 2236.376 kb on - strand at 2236.448 kb on - strand at 2236.465 kb on - strand at 2236.503 kb on + strand, within CCNA_02087 at 2236.542 kb on + strand, within CCNA_02087 at 2236.550 kb on - strand, within CCNA_02087 at 2236.559 kb on - strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.594 kb on - strand, within CCNA_02087 at 2236.610 kb on + strand, within CCNA_02087 at 2236.618 kb on - strand, within CCNA_02087 at 2236.634 kb on + strand, within CCNA_02087 at 2236.659 kb on - strand, within CCNA_02087 at 2236.722 kb on + strand, within CCNA_02087 at 2236.725 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.808 kb on + strand, within CCNA_02087 at 2236.835 kb on + strand, within CCNA_02087 at 2236.838 kb on - strand, within CCNA_02087 at 2236.843 kb on - strand, within CCNA_02087 at 2236.861 kb on - strand, within CCNA_02087 at 2236.910 kb on - strand, within CCNA_02087 at 2236.912 kb on + strand, within CCNA_02087 at 2236.930 kb on + strand, within CCNA_02087 at 2236.937 kb on + strand, within CCNA_02087 at 2236.937 kb on + strand, within CCNA_02087 at 2236.938 kb on - strand, within CCNA_02087 at 2236.948 kb on + strand, within CCNA_02087 at 2236.951 kb on - strand, within CCNA_02087 at 2236.988 kb on - strand, within CCNA_02087 at 2237.018 kb on - strand, within CCNA_02087 at 2237.021 kb on + strand, within CCNA_02087 at 2237.029 kb on - strand, within CCNA_02087 at 2237.039 kb on - strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.092 kb on - strand, within CCNA_02087 at 2237.096 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.111 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.118 kb on + strand, within CCNA_02087 at 2237.121 kb on - strand, within CCNA_02087 at 2237.137 kb on - strand, within CCNA_02087 at 2237.143 kb on + strand, within CCNA_02087 at 2237.144 kb on + strand, within CCNA_02087
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,234,395 + -0.9 2,234,403 - -0.8 2,234,437 + -2.0 2,234,445 - +0.1 2,234,445 - -1.8 2,234,501 + CCNA_02085 0.14 -0.6 2,234,503 - CCNA_02085 0.14 +0.7 2,234,538 - CCNA_02085 0.18 -1.2 2,234,563 + CCNA_02085 0.20 -0.1 2,234,585 - CCNA_02085 0.22 -0.1 2,234,610 + CCNA_02085 0.25 -0.9 2,234,618 - CCNA_02085 0.26 -0.2 2,234,618 - CCNA_02085 0.26 +0.7 2,234,620 + CCNA_02085 0.26 +0.4 2,234,630 - CCNA_02085 0.27 -0.5 2,234,804 - CCNA_02085 0.43 -2.3 2,234,809 - CCNA_02085 0.44 -0.5 2,234,827 + CCNA_02085 0.46 +0.1 2,234,858 - CCNA_02085 0.49 +1.1 2,234,914 + CCNA_02085 0.54 -1.9 2,234,922 - CCNA_02085 0.55 -1.3 2,234,922 - CCNA_02085 0.55 +0.4 2,234,939 - CCNA_02085 0.56 -1.8 2,235,017 - CCNA_02085 0.64 +0.4 2,235,056 + CCNA_02085 0.68 +0.7 2,235,063 + CCNA_02085 0.68 -1.7 2,235,225 + CCNA_02085 0.84 -0.5 2,235,233 - CCNA_02085 0.85 -1.7 2,235,279 + CCNA_02085 0.89 -0.3 2,235,287 + -0.8 2,235,292 + +0.4 2,235,293 - +1.4 2,235,295 - -1.4 2,235,302 - -0.1 2,235,349 + -0.8 2,235,357 - +1.0 2,235,357 - +0.5 2,235,374 + -2.5 2,236,227 - +0.5 2,236,237 + -0.3 2,236,252 + -0.0 2,236,262 + +0.5 2,236,265 - -0.7 2,236,278 + +0.3 2,236,286 - +0.6 2,236,286 - +0.3 2,236,295 - -0.3 2,236,295 - +0.1 2,236,310 + -0.8 2,236,313 + -0.9 2,236,318 - +1.0 2,236,345 + -1.1 2,236,348 - +0.2 2,236,350 + -0.7 2,236,368 - -0.8 2,236,368 - -0.4 2,236,376 - +0.6 2,236,448 - +0.5 2,236,465 - +0.4 2,236,503 + CCNA_02087 0.12 -2.2 2,236,542 + CCNA_02087 0.16 -0.5 2,236,550 - CCNA_02087 0.16 -0.3 2,236,559 - CCNA_02087 0.17 -0.1 2,236,586 + CCNA_02087 0.19 -1.6 2,236,586 + CCNA_02087 0.19 -1.6 2,236,586 + CCNA_02087 0.19 -0.2 2,236,594 - CCNA_02087 0.20 -1.3 2,236,610 + CCNA_02087 0.21 -1.2 2,236,618 - CCNA_02087 0.22 +0.0 2,236,634 + CCNA_02087 0.23 -1.3 2,236,659 - CCNA_02087 0.25 -0.1 2,236,722 + CCNA_02087 0.31 -1.4 2,236,725 - CCNA_02087 0.31 +0.7 2,236,754 - CCNA_02087 0.34 +0.5 2,236,754 - CCNA_02087 0.34 +1.5 2,236,754 - CCNA_02087 0.34 +1.0 2,236,754 - CCNA_02087 0.34 +0.1 2,236,772 + CCNA_02087 0.35 -1.4 2,236,772 + CCNA_02087 0.35 +0.3 2,236,772 + CCNA_02087 0.35 -1.5 2,236,772 + CCNA_02087 0.35 -0.2 2,236,780 - CCNA_02087 0.36 +0.4 2,236,780 - CCNA_02087 0.36 +0.8 2,236,780 - CCNA_02087 0.36 -0.2 2,236,780 - CCNA_02087 0.36 +0.1 2,236,808 + CCNA_02087 0.38 +0.1 2,236,835 + CCNA_02087 0.40 +0.0 2,236,838 - CCNA_02087 0.41 +0.3 2,236,843 - CCNA_02087 0.41 -1.7 2,236,861 - CCNA_02087 0.43 +0.3 2,236,910 - CCNA_02087 0.47 +0.2 2,236,912 + CCNA_02087 0.47 -0.1 2,236,930 + CCNA_02087 0.48 -2.3 2,236,937 + CCNA_02087 0.49 +0.2 2,236,937 + CCNA_02087 0.49 -1.7 2,236,938 - CCNA_02087 0.49 -0.0 2,236,948 + CCNA_02087 0.50 -2.1 2,236,951 - CCNA_02087 0.50 +0.3 2,236,988 - CCNA_02087 0.53 -0.2 2,237,018 - CCNA_02087 0.56 +0.6 2,237,021 + CCNA_02087 0.56 -1.3 2,237,029 - CCNA_02087 0.57 -0.1 2,237,039 - CCNA_02087 0.58 +1.8 2,237,083 + CCNA_02087 0.61 -0.4 2,237,083 + CCNA_02087 0.61 -0.2 2,237,083 + CCNA_02087 0.61 -0.9 2,237,092 - CCNA_02087 0.62 -0.7 2,237,096 - CCNA_02087 0.62 -2.4 2,237,097 - CCNA_02087 0.62 +0.5 2,237,097 - CCNA_02087 0.62 -0.5 2,237,111 - CCNA_02087 0.64 -0.2 2,237,116 - CCNA_02087 0.64 -0.6 2,237,116 - CCNA_02087 0.64 -0.3 2,237,118 + CCNA_02087 0.64 -1.4 2,237,121 - CCNA_02087 0.64 +0.1 2,237,137 - CCNA_02087 0.66 -0.2 2,237,143 + CCNA_02087 0.66 -0.9 2,237,144 + CCNA_02087 0.66 -0.1
Or see this region's nucleotide sequence