Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02070

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02068 and CCNA_02069 overlap by 1 nucleotidesCCNA_02069 and CCNA_02070 are separated by 0 nucleotidesCCNA_02070 and CCNA_02071 are separated by 157 nucleotidesCCNA_02071 and CCNA_02072 are separated by 120 nucleotides CCNA_02068: CCNA_02068 - Mth938-like membrane protein, at 2,219,512 to 2,219,865 _02068 CCNA_02069: CCNA_02069 - protein translocase subunit secF, at 2,219,865 to 2,220,830 _02069 CCNA_02070: CCNA_02070 - protein translocase subunit secD, at 2,220,831 to 2,222,429 _02070 CCNA_02071: CCNA_02071 - protein translocase subunit YajC, at 2,222,587 to 2,222,898 _02071 CCNA_02072: CCNA_02072 - ATP-dependent protease subunit, at 2,223,019 to 2,223,858 _02072 Position (kb) 2220 2221 2222 2223Strain fitness (log2 ratio) -1 0 1at 2220.821 kb on - strandat 2223.005 kb on - strandat 2223.018 kb on - strandat 2223.069 kb on - strandat 2223.102 kb on + strandat 2223.184 kb on - strand, within CCNA_02072at 2223.270 kb on + strand, within CCNA_02072at 2223.270 kb on + strand, within CCNA_02072at 2223.270 kb on + strand, within CCNA_02072at 2223.270 kb on + strand, within CCNA_02072at 2223.270 kb on + strand, within CCNA_02072at 2223.278 kb on - strand, within CCNA_02072at 2223.278 kb on - strand, within CCNA_02072at 2223.278 kb on - strand, within CCNA_02072at 2223.278 kb on - strand, within CCNA_02072at 2223.278 kb on - strand, within CCNA_02072at 2223.341 kb on + strand, within CCNA_02072at 2223.341 kb on + strand, within CCNA_02072at 2223.344 kb on - strand, within CCNA_02072at 2223.349 kb on - strand, within CCNA_02072at 2223.368 kb on + strand, within CCNA_02072

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,220,821 - +0.4
2,223,005 - -0.6
2,223,018 - +0.1
2,223,069 - +0.7
2,223,102 + -0.2
2,223,184 - CCNA_02072 0.20 +0.7
2,223,270 + CCNA_02072 0.30 -0.1
2,223,270 + CCNA_02072 0.30 +0.1
2,223,270 + CCNA_02072 0.30 -0.6
2,223,270 + CCNA_02072 0.30 +0.9
2,223,270 + CCNA_02072 0.30 +0.2
2,223,278 - CCNA_02072 0.31 -0.7
2,223,278 - CCNA_02072 0.31 +0.4
2,223,278 - CCNA_02072 0.31 -0.3
2,223,278 - CCNA_02072 0.31 -0.4
2,223,278 - CCNA_02072 0.31 -1.2
2,223,341 + CCNA_02072 0.38 -0.5
2,223,341 + CCNA_02072 0.38 +0.6
2,223,344 - CCNA_02072 0.39 +0.9
2,223,349 - CCNA_02072 0.39 +0.8
2,223,368 + CCNA_02072 0.42 -0.1

Or see this region's nucleotide sequence