Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02065 and CCNA_02066 are separated by 134 nucleotides CCNA_02066 and CCNA_02067 are separated by 71 nucleotides CCNA_02067 and CCNA_02068 are separated by 95 nucleotides CCNA_02068 and CCNA_02069 overlap by 1 nucleotides
CCNA_02065: CCNA_02065 - acylamino-acid-releasing enzyme, at 2,215,780 to 2,217,882
_02065
CCNA_02066: CCNA_02066 - phytoene/squalene synthase family protein, at 2,218,017 to 2,218,730
_02066
CCNA_02067: CCNA_02067 - conserved membrane spanning protein, at 2,218,802 to 2,219,416
_02067
CCNA_02068: CCNA_02068 - Mth938-like membrane protein, at 2,219,512 to 2,219,865
_02068
CCNA_02069: CCNA_02069 - protein translocase subunit secF, at 2,219,865 to 2,220,830
_02069
Position (kb)
2218
2219
2220 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2217.802 kb on + strand at 2217.810 kb on - strand at 2217.822 kb on + strand at 2217.900 kb on + strand at 2217.908 kb on - strand at 2217.944 kb on - strand at 2217.959 kb on + strand at 2217.975 kb on - strand at 2217.999 kb on + strand at 2218.168 kb on + strand, within CCNA_02066 at 2218.176 kb on - strand, within CCNA_02066 at 2218.176 kb on - strand, within CCNA_02066 at 2218.478 kb on - strand, within CCNA_02066 at 2218.478 kb on - strand, within CCNA_02066 at 2218.478 kb on - strand, within CCNA_02066 at 2218.553 kb on - strand, within CCNA_02066 at 2218.675 kb on - strand at 2218.680 kb on + strand at 2218.726 kb on + strand at 2218.840 kb on + strand at 2218.866 kb on - strand, within CCNA_02067 at 2218.902 kb on + strand, within CCNA_02067 at 2218.904 kb on - strand, within CCNA_02067 at 2218.904 kb on - strand, within CCNA_02067 at 2218.973 kb on - strand, within CCNA_02067 at 2218.997 kb on + strand, within CCNA_02067 at 2219.010 kb on - strand, within CCNA_02067 at 2219.018 kb on + strand, within CCNA_02067 at 2219.018 kb on + strand, within CCNA_02067 at 2219.049 kb on - strand, within CCNA_02067 at 2219.073 kb on - strand, within CCNA_02067 at 2219.075 kb on - strand, within CCNA_02067 at 2219.126 kb on + strand, within CCNA_02067 at 2219.153 kb on - strand, within CCNA_02067 at 2219.249 kb on - strand, within CCNA_02067 at 2219.368 kb on - strand at 2219.528 kb on + strand at 2219.554 kb on + strand, within CCNA_02068 at 2219.562 kb on - strand, within CCNA_02068 at 2219.588 kb on + strand, within CCNA_02068 at 2219.627 kb on - strand, within CCNA_02068 at 2219.654 kb on + strand, within CCNA_02068 at 2219.659 kb on + strand, within CCNA_02068 at 2219.659 kb on + strand, within CCNA_02068 at 2219.724 kb on + strand, within CCNA_02068
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,217,802 + +0.2 2,217,810 - -0.5 2,217,822 + -0.0 2,217,900 + +0.1 2,217,908 - -2.0 2,217,944 - +0.8 2,217,959 + +0.2 2,217,975 - +0.2 2,217,999 + +0.4 2,218,168 + CCNA_02066 0.21 -0.3 2,218,176 - CCNA_02066 0.22 -0.3 2,218,176 - CCNA_02066 0.22 +0.1 2,218,478 - CCNA_02066 0.65 -0.0 2,218,478 - CCNA_02066 0.65 -0.6 2,218,478 - CCNA_02066 0.65 +0.3 2,218,553 - CCNA_02066 0.75 +0.1 2,218,675 - -0.7 2,218,680 + -0.6 2,218,726 + -0.5 2,218,840 + -0.2 2,218,866 - CCNA_02067 0.10 +0.8 2,218,902 + CCNA_02067 0.16 -0.5 2,218,904 - CCNA_02067 0.17 +0.6 2,218,904 - CCNA_02067 0.17 +0.2 2,218,973 - CCNA_02067 0.28 +0.2 2,218,997 + CCNA_02067 0.32 -0.4 2,219,010 - CCNA_02067 0.34 +0.9 2,219,018 + CCNA_02067 0.35 -1.1 2,219,018 + CCNA_02067 0.35 -1.3 2,219,049 - CCNA_02067 0.40 +0.2 2,219,073 - CCNA_02067 0.44 +0.9 2,219,075 - CCNA_02067 0.44 +0.5 2,219,126 + CCNA_02067 0.53 -3.6 2,219,153 - CCNA_02067 0.57 +0.9 2,219,249 - CCNA_02067 0.73 +0.7 2,219,368 - +0.3 2,219,528 + +0.1 2,219,554 + CCNA_02068 0.12 +1.1 2,219,562 - CCNA_02068 0.14 -0.6 2,219,588 + CCNA_02068 0.21 -0.3 2,219,627 - CCNA_02068 0.32 -0.5 2,219,654 + CCNA_02068 0.40 -0.6 2,219,659 + CCNA_02068 0.42 -0.9 2,219,659 + CCNA_02068 0.42 -0.3 2,219,724 + CCNA_02068 0.60 -0.5
Or see this region's nucleotide sequence