Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02017 and CCNA_02018 are separated by 8 nucleotides CCNA_02018 and CCNA_02019 overlap by 4 nucleotides CCNA_02019 and CCNA_02020 are separated by 82 nucleotides CCNA_02020 and CCNA_03961 are separated by 10 nucleotides CCNA_03961 and CCNA_02021 overlap by 4 nucleotides
CCNA_02017: CCNA_02017 - NADH-quinone oxidoreductase chain L, at 2,164,265 to 2,166,325
_02017
CCNA_02018: CCNA_02018 - NADH-quinone oxidoreductase chain K, at 2,166,334 to 2,166,639
_02018
CCNA_02019: CCNA_02019 - NADH-quinone oxidoreductase chain J, at 2,166,636 to 2,167,253
_02019
CCNA_02020: CCNA_02020 - NADH-quinone oxidoreductase chain I, at 2,167,336 to 2,167,827
_02020
CCNA_03961: CCNA_03961 - hypothetical protein, at 2,167,838 to 2,168,062
_03961
CCNA_02021: CCNA_02021 - hypothetical protein, at 2,168,059 to 2,168,298
_02021
Position (kb)
2166
2167
2168 Strain fitness (log2 ratio)
-1
0
1
2 at 2166.682 kb on - strand at 2166.682 kb on - strand at 2167.877 kb on - strand, within CCNA_03961 at 2167.877 kb on - strand, within CCNA_03961 at 2167.946 kb on - strand, within CCNA_03961 at 2167.946 kb on - strand, within CCNA_03961 at 2167.946 kb on - strand, within CCNA_03961 at 2167.959 kb on - strand, within CCNA_03961 at 2168.050 kb on - strand at 2168.063 kb on + strand at 2168.071 kb on - strand at 2168.108 kb on + strand, within CCNA_02021 at 2168.111 kb on - strand, within CCNA_02021 at 2168.114 kb on + strand, within CCNA_02021 at 2168.122 kb on - strand, within CCNA_02021 at 2168.137 kb on - strand, within CCNA_02021 at 2168.150 kb on + strand, within CCNA_02021 at 2168.150 kb on - strand, within CCNA_02021 at 2168.158 kb on - strand, within CCNA_02021 at 2168.158 kb on - strand, within CCNA_02021 at 2168.218 kb on - strand, within CCNA_02021
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,166,682 - +0.1 2,166,682 - -0.8 2,167,877 - CCNA_03961 0.17 +1.3 2,167,877 - CCNA_03961 0.17 -0.2 2,167,946 - CCNA_03961 0.48 +1.3 2,167,946 - CCNA_03961 0.48 +0.0 2,167,946 - CCNA_03961 0.48 +0.8 2,167,959 - CCNA_03961 0.54 +1.8 2,168,050 - +0.0 2,168,063 + -0.8 2,168,071 - +0.1 2,168,108 + CCNA_02021 0.20 -0.5 2,168,111 - CCNA_02021 0.22 +0.3 2,168,114 + CCNA_02021 0.23 +1.4 2,168,122 - CCNA_02021 0.26 +0.6 2,168,137 - CCNA_02021 0.33 +0.3 2,168,150 + CCNA_02021 0.38 +0.8 2,168,150 - CCNA_02021 0.38 +0.4 2,168,158 - CCNA_02021 0.41 +0.8 2,168,158 - CCNA_02021 0.41 +0.5 2,168,218 - CCNA_02021 0.66 -0.1
Or see this region's nucleotide sequence