Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01961 and CCNA_01962 are separated by 99 nucleotides CCNA_01962 and CCNA_01963 overlap by 64 nucleotides CCNA_01963 and CCNA_01964 are separated by 4 nucleotides CCNA_01964 and CCNA_01966 are separated by 279 nucleotides
CCNA_01961: CCNA_01961 - biotin carboxylase, at 2,104,868 to 2,106,214
_01961
CCNA_01962: CCNA_01962 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,106,314 to 2,106,967
_01962
CCNA_01963: CCNA_01963 - hypothetical protein, at 2,106,904 to 2,107,542
_01963
CCNA_01964: CCNA_01964 - NADH dehydrogenase, at 2,107,547 to 2,107,942
_01964
CCNA_01966: CCNA_01966 - vitamin B12-dependent ribonucleotide reductase, at 2,108,222 to 2,110,945
_01966
Position (kb)
2106
2107
2108 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2106.288 kb on + strand at 2106.288 kb on + strand at 2106.288 kb on + strand at 2106.288 kb on + strand at 2106.296 kb on - strand at 2106.306 kb on - strand at 2106.308 kb on - strand at 2106.414 kb on + strand, within CCNA_01962 at 2106.422 kb on - strand, within CCNA_01962 at 2106.464 kb on + strand, within CCNA_01962 at 2106.479 kb on + strand, within CCNA_01962 at 2106.513 kb on - strand, within CCNA_01962 at 2106.515 kb on + strand, within CCNA_01962 at 2106.523 kb on - strand, within CCNA_01962 at 2106.570 kb on - strand, within CCNA_01962 at 2106.615 kb on - strand, within CCNA_01962 at 2106.615 kb on - strand, within CCNA_01962 at 2106.616 kb on - strand, within CCNA_01962 at 2106.635 kb on + strand, within CCNA_01962 at 2106.641 kb on - strand, within CCNA_01962 at 2106.643 kb on - strand, within CCNA_01962 at 2106.651 kb on + strand, within CCNA_01962 at 2106.715 kb on + strand, within CCNA_01962 at 2106.791 kb on - strand, within CCNA_01962 at 2106.813 kb on - strand, within CCNA_01962 at 2106.829 kb on + strand, within CCNA_01962 at 2106.874 kb on + strand, within CCNA_01962 at 2106.875 kb on + strand, within CCNA_01962 at 2106.882 kb on - strand, within CCNA_01962 at 2106.985 kb on + strand, within CCNA_01963 at 2107.011 kb on - strand, within CCNA_01963 at 2107.017 kb on - strand, within CCNA_01963 at 2107.017 kb on - strand, within CCNA_01963 at 2107.017 kb on - strand, within CCNA_01963 at 2107.343 kb on - strand, within CCNA_01963 at 2107.351 kb on + strand, within CCNA_01963 at 2107.387 kb on - strand, within CCNA_01963 at 2107.519 kb on + strand at 2107.577 kb on + strand at 2107.623 kb on + strand, within CCNA_01964 at 2107.975 kb on - strand at 2108.012 kb on - strand at 2108.035 kb on - strand at 2108.037 kb on - strand at 2108.056 kb on + strand at 2108.056 kb on + strand at 2108.064 kb on - strand at 2108.064 kb on - strand at 2108.092 kb on - strand at 2108.094 kb on + strand at 2108.112 kb on + strand at 2108.127 kb on - strand at 2108.136 kb on + strand at 2108.139 kb on + strand at 2108.170 kb on + strand at 2108.233 kb on + strand at 2108.241 kb on + strand at 2108.254 kb on - strand at 2108.284 kb on + strand at 2108.351 kb on + strand at 2108.393 kb on + strand at 2108.401 kb on - strand at 2108.496 kb on - strand, within CCNA_01966 at 2108.537 kb on + strand, within CCNA_01966 at 2108.537 kb on + strand, within CCNA_01966
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 2,106,288 + -0.2 2,106,288 + +0.6 2,106,288 + +0.2 2,106,288 + +0.4 2,106,296 - +1.3 2,106,306 - +1.1 2,106,308 - +0.2 2,106,414 + CCNA_01962 0.15 +0.5 2,106,422 - CCNA_01962 0.17 -0.2 2,106,464 + CCNA_01962 0.23 -0.1 2,106,479 + CCNA_01962 0.25 +0.6 2,106,513 - CCNA_01962 0.30 -0.9 2,106,515 + CCNA_01962 0.31 +1.8 2,106,523 - CCNA_01962 0.32 +0.1 2,106,570 - CCNA_01962 0.39 +0.2 2,106,615 - CCNA_01962 0.46 +0.1 2,106,615 - CCNA_01962 0.46 -0.6 2,106,616 - CCNA_01962 0.46 +1.6 2,106,635 + CCNA_01962 0.49 +0.1 2,106,641 - CCNA_01962 0.50 +1.0 2,106,643 - CCNA_01962 0.50 -0.1 2,106,651 + CCNA_01962 0.52 -0.5 2,106,715 + CCNA_01962 0.61 +0.4 2,106,791 - CCNA_01962 0.73 -0.5 2,106,813 - CCNA_01962 0.76 +0.2 2,106,829 + CCNA_01962 0.79 +0.1 2,106,874 + CCNA_01962 0.86 -0.5 2,106,875 + CCNA_01962 0.86 -0.3 2,106,882 - CCNA_01962 0.87 +1.1 2,106,985 + CCNA_01963 0.13 -1.1 2,107,011 - CCNA_01963 0.17 +0.2 2,107,017 - CCNA_01963 0.18 +0.3 2,107,017 - CCNA_01963 0.18 +0.5 2,107,017 - CCNA_01963 0.18 +1.1 2,107,343 - CCNA_01963 0.69 +0.6 2,107,351 + CCNA_01963 0.70 -0.8 2,107,387 - CCNA_01963 0.76 +0.3 2,107,519 + +0.4 2,107,577 + +1.0 2,107,623 + CCNA_01964 0.19 -1.1 2,107,975 - -0.1 2,108,012 - +1.8 2,108,035 - -0.1 2,108,037 - +0.7 2,108,056 + -2.0 2,108,056 + -1.3 2,108,064 - -0.7 2,108,064 - +1.1 2,108,092 - -0.4 2,108,094 + -0.3 2,108,112 + +0.8 2,108,127 - -0.2 2,108,136 + -0.8 2,108,139 + +1.3 2,108,170 + +0.7 2,108,233 + -0.1 2,108,241 + -0.5 2,108,254 - +0.8 2,108,284 + +0.0 2,108,351 + +0.2 2,108,393 + -0.2 2,108,401 - +1.4 2,108,496 - CCNA_01966 0.10 -0.5 2,108,537 + CCNA_01966 0.12 +1.5 2,108,537 + CCNA_01966 0.12 -0.4
Or see this region's nucleotide sequence