Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01963

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01961 and CCNA_01962 are separated by 99 nucleotidesCCNA_01962 and CCNA_01963 overlap by 64 nucleotidesCCNA_01963 and CCNA_01964 are separated by 4 nucleotidesCCNA_01964 and CCNA_01966 are separated by 279 nucleotides CCNA_01961: CCNA_01961 - biotin carboxylase, at 2,104,868 to 2,106,214 _01961 CCNA_01962: CCNA_01962 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,106,314 to 2,106,967 _01962 CCNA_01963: CCNA_01963 - hypothetical protein, at 2,106,904 to 2,107,542 _01963 CCNA_01964: CCNA_01964 - NADH dehydrogenase, at 2,107,547 to 2,107,942 _01964 CCNA_01966: CCNA_01966 - vitamin B12-dependent ribonucleotide reductase, at 2,108,222 to 2,110,945 _01966 Position (kb) 2106 2107 2108Strain fitness (log2 ratio) -2 -1 0 1 2at 2106.288 kb on + strandat 2106.288 kb on + strandat 2106.288 kb on + strandat 2106.288 kb on + strandat 2106.296 kb on - strandat 2106.306 kb on - strandat 2106.308 kb on - strandat 2106.414 kb on + strand, within CCNA_01962at 2106.422 kb on - strand, within CCNA_01962at 2106.464 kb on + strand, within CCNA_01962at 2106.479 kb on + strand, within CCNA_01962at 2106.513 kb on - strand, within CCNA_01962at 2106.515 kb on + strand, within CCNA_01962at 2106.523 kb on - strand, within CCNA_01962at 2106.570 kb on - strand, within CCNA_01962at 2106.615 kb on - strand, within CCNA_01962at 2106.615 kb on - strand, within CCNA_01962at 2106.616 kb on - strand, within CCNA_01962at 2106.635 kb on + strand, within CCNA_01962at 2106.641 kb on - strand, within CCNA_01962at 2106.643 kb on - strand, within CCNA_01962at 2106.651 kb on + strand, within CCNA_01962at 2106.715 kb on + strand, within CCNA_01962at 2106.791 kb on - strand, within CCNA_01962at 2106.813 kb on - strand, within CCNA_01962at 2106.829 kb on + strand, within CCNA_01962at 2106.874 kb on + strand, within CCNA_01962at 2106.875 kb on + strand, within CCNA_01962at 2106.882 kb on - strand, within CCNA_01962at 2106.985 kb on + strand, within CCNA_01963at 2107.011 kb on - strand, within CCNA_01963at 2107.017 kb on - strand, within CCNA_01963at 2107.017 kb on - strand, within CCNA_01963at 2107.017 kb on - strand, within CCNA_01963at 2107.343 kb on - strand, within CCNA_01963at 2107.351 kb on + strand, within CCNA_01963at 2107.387 kb on - strand, within CCNA_01963at 2107.519 kb on + strandat 2107.577 kb on + strandat 2107.623 kb on + strand, within CCNA_01964at 2107.975 kb on - strandat 2108.012 kb on - strandat 2108.035 kb on - strandat 2108.037 kb on - strandat 2108.056 kb on + strandat 2108.056 kb on + strandat 2108.064 kb on - strandat 2108.064 kb on - strandat 2108.092 kb on - strandat 2108.094 kb on + strandat 2108.112 kb on + strandat 2108.127 kb on - strandat 2108.136 kb on + strandat 2108.139 kb on + strandat 2108.170 kb on + strandat 2108.233 kb on + strandat 2108.241 kb on + strandat 2108.254 kb on - strandat 2108.284 kb on + strandat 2108.351 kb on + strandat 2108.393 kb on + strandat 2108.401 kb on - strandat 2108.496 kb on - strand, within CCNA_01966at 2108.537 kb on + strand, within CCNA_01966at 2108.537 kb on + strand, within CCNA_01966

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,106,288 + -0.2
2,106,288 + +0.6
2,106,288 + +0.2
2,106,288 + +0.4
2,106,296 - +1.3
2,106,306 - +1.1
2,106,308 - +0.2
2,106,414 + CCNA_01962 0.15 +0.5
2,106,422 - CCNA_01962 0.17 -0.2
2,106,464 + CCNA_01962 0.23 -0.1
2,106,479 + CCNA_01962 0.25 +0.6
2,106,513 - CCNA_01962 0.30 -0.9
2,106,515 + CCNA_01962 0.31 +1.8
2,106,523 - CCNA_01962 0.32 +0.1
2,106,570 - CCNA_01962 0.39 +0.2
2,106,615 - CCNA_01962 0.46 +0.1
2,106,615 - CCNA_01962 0.46 -0.6
2,106,616 - CCNA_01962 0.46 +1.6
2,106,635 + CCNA_01962 0.49 +0.1
2,106,641 - CCNA_01962 0.50 +1.0
2,106,643 - CCNA_01962 0.50 -0.1
2,106,651 + CCNA_01962 0.52 -0.5
2,106,715 + CCNA_01962 0.61 +0.4
2,106,791 - CCNA_01962 0.73 -0.5
2,106,813 - CCNA_01962 0.76 +0.2
2,106,829 + CCNA_01962 0.79 +0.1
2,106,874 + CCNA_01962 0.86 -0.5
2,106,875 + CCNA_01962 0.86 -0.3
2,106,882 - CCNA_01962 0.87 +1.1
2,106,985 + CCNA_01963 0.13 -1.1
2,107,011 - CCNA_01963 0.17 +0.2
2,107,017 - CCNA_01963 0.18 +0.3
2,107,017 - CCNA_01963 0.18 +0.5
2,107,017 - CCNA_01963 0.18 +1.1
2,107,343 - CCNA_01963 0.69 +0.6
2,107,351 + CCNA_01963 0.70 -0.8
2,107,387 - CCNA_01963 0.76 +0.3
2,107,519 + +0.4
2,107,577 + +1.0
2,107,623 + CCNA_01964 0.19 -1.1
2,107,975 - -0.1
2,108,012 - +1.8
2,108,035 - -0.1
2,108,037 - +0.7
2,108,056 + -2.0
2,108,056 + -1.3
2,108,064 - -0.7
2,108,064 - +1.1
2,108,092 - -0.4
2,108,094 + -0.3
2,108,112 + +0.8
2,108,127 - -0.2
2,108,136 + -0.8
2,108,139 + +1.3
2,108,170 + +0.7
2,108,233 + -0.1
2,108,241 + -0.5
2,108,254 - +0.8
2,108,284 + +0.0
2,108,351 + +0.2
2,108,393 + -0.2
2,108,401 - +1.4
2,108,496 - CCNA_01966 0.10 -0.5
2,108,537 + CCNA_01966 0.12 +1.5
2,108,537 + CCNA_01966 0.12 -0.4

Or see this region's nucleotide sequence