Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01809 and CCNA_01810 are separated by 3 nucleotides CCNA_01810 and CCNA_01811 overlap by 4 nucleotides CCNA_01811 and CCNA_01812 are separated by 38 nucleotides CCNA_01812 and CCNA_01813 are separated by 99 nucleotides
CCNA_01809: CCNA_01809 - lipoic acid synthetase, at 1,934,502 to 1,935,479
_01809
CCNA_01810: CCNA_01810 - coenzyme Q-binding protein, at 1,935,483 to 1,935,929
_01810
CCNA_01811: CCNA_01811 - competence/damage-inducible protein CinA, at 1,935,926 to 1,936,417
_01811
CCNA_01812: CCNA_01812 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,936,456 to 1,937,604
_01812
CCNA_01813: CCNA_01813 - tRNA-dihydrouridine synthase, at 1,937,704 to 1,938,711
_01813
Position (kb) 1936
1937
1938 Strain fitness (log2 ratio) -2
-1
0
1 at 1935.473 kb on + strand at 1935.480 kb on + strand at 1935.488 kb on - strand at 1936.070 kb on - strand, within CCNA_01811 at 1936.123 kb on + strand, within CCNA_01811 at 1936.131 kb on + strand, within CCNA_01811 at 1936.138 kb on - strand, within CCNA_01811 at 1936.197 kb on - strand, within CCNA_01811 at 1936.228 kb on - strand, within CCNA_01811 at 1936.339 kb on - strand, within CCNA_01811 at 1936.445 kb on + strand at 1936.936 kb on - strand, within CCNA_01812 at 1937.599 kb on + strand at 1937.652 kb on + strand at 1937.737 kb on + strand at 1937.748 kb on + strand at 1937.901 kb on + strand, within CCNA_01813 at 1937.902 kb on + strand, within CCNA_01813 at 1937.929 kb on - strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.055 kb on + strand, within CCNA_01813 at 1938.063 kb on - strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.068 kb on + strand, within CCNA_01813 at 1938.108 kb on - strand, within CCNA_01813 at 1938.110 kb on + strand, within CCNA_01813 at 1938.134 kb on + strand, within CCNA_01813 at 1938.220 kb on + strand, within CCNA_01813 at 1938.220 kb on + strand, within CCNA_01813 at 1938.228 kb on - strand, within CCNA_01813 at 1938.254 kb on - strand, within CCNA_01813 at 1938.299 kb on - strand, within CCNA_01813 at 1938.363 kb on + strand, within CCNA_01813 at 1938.371 kb on - strand, within CCNA_01813 at 1938.429 kb on - strand, within CCNA_01813 at 1938.436 kb on + strand, within CCNA_01813 at 1938.444 kb on - strand, within CCNA_01813 at 1938.444 kb on - strand, within CCNA_01813 at 1938.478 kb on + strand, within CCNA_01813 at 1938.519 kb on + strand, within CCNA_01813 at 1938.546 kb on - strand, within CCNA_01813 at 1938.573 kb on + strand, within CCNA_01813 at 1938.573 kb on + strand, within CCNA_01813
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,935,473 + +1.6 1,935,480 + +0.4 1,935,488 - +1.0 1,936,070 - CCNA_01811 0.29 +1.4 1,936,123 + CCNA_01811 0.40 -0.3 1,936,131 + CCNA_01811 0.42 +1.3 1,936,138 - CCNA_01811 0.43 +0.9 1,936,197 - CCNA_01811 0.55 +0.3 1,936,228 - CCNA_01811 0.61 +0.6 1,936,339 - CCNA_01811 0.84 +0.1 1,936,445 + -0.3 1,936,936 - CCNA_01812 0.42 +1.3 1,937,599 + +0.1 1,937,652 + -0.5 1,937,737 + +0.2 1,937,748 + -0.2 1,937,901 + CCNA_01813 0.20 +0.6 1,937,902 + CCNA_01813 0.20 +0.1 1,937,929 - CCNA_01813 0.22 -1.0 1,938,055 + CCNA_01813 0.35 +0.2 1,938,055 + CCNA_01813 0.35 +0.4 1,938,055 + CCNA_01813 0.35 +0.9 1,938,055 + CCNA_01813 0.35 +0.1 1,938,055 + CCNA_01813 0.35 +0.0 1,938,063 - CCNA_01813 0.36 -0.4 1,938,068 + CCNA_01813 0.36 +0.0 1,938,068 + CCNA_01813 0.36 +0.0 1,938,068 + CCNA_01813 0.36 +0.0 1,938,108 - CCNA_01813 0.40 -0.3 1,938,110 + CCNA_01813 0.40 +0.5 1,938,134 + CCNA_01813 0.43 +0.8 1,938,220 + CCNA_01813 0.51 +0.5 1,938,220 + CCNA_01813 0.51 -0.4 1,938,228 - CCNA_01813 0.52 -1.1 1,938,254 - CCNA_01813 0.55 -1.8 1,938,299 - CCNA_01813 0.59 +0.9 1,938,363 + CCNA_01813 0.65 +0.3 1,938,371 - CCNA_01813 0.66 -1.0 1,938,429 - CCNA_01813 0.72 -0.1 1,938,436 + CCNA_01813 0.73 +1.3 1,938,444 - CCNA_01813 0.73 +0.0 1,938,444 - CCNA_01813 0.73 -0.1 1,938,478 + CCNA_01813 0.77 +0.2 1,938,519 + CCNA_01813 0.81 +0.2 1,938,546 - CCNA_01813 0.84 +0.3 1,938,573 + CCNA_01813 0.86 -0.0 1,938,573 + CCNA_01813 0.86 +0.1
Or see this region's nucleotide sequence