Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01800 and CCNA_01801 are separated by 5 nucleotides CCNA_01801 and CCNA_01802 overlap by 4 nucleotides CCNA_01802 and CCNA_01803 are separated by 12 nucleotides CCNA_01803 and CCNA_01804 are separated by 18 nucleotides CCNA_01804 and CCNA_01805 are separated by 82 nucleotides
CCNA_01800: CCNA_01800 - pyruvate dehydrogenase E1 component beta subunit, at 1,924,985 to 1,926,337
_01800
CCNA_01801: CCNA_01801 - hypothetical protein, at 1,926,343 to 1,926,795
_01801
CCNA_01802: CCNA_01802 - hypothetical protein, at 1,926,792 to 1,926,908
_01802
CCNA_01803: CCNA_01803 - pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase component, at 1,926,921 to 1,928,207
_01803
CCNA_01804: CCNA_01804 - glutathione peroxidase, at 1,928,226 to 1,928,708
_01804
CCNA_01805: CCNA_01805 - dihydrolipoamide dehydrogenase, at 1,928,791 to 1,930,191
_01805
Position (kb) 1926
1927
1928
1929 Strain fitness (log2 ratio) -1
0
1
2
3 at 1925.961 kb on + strand, within CCNA_01800 at 1926.327 kb on + strand at 1926.443 kb on - strand, within CCNA_01801 at 1926.631 kb on + strand, within CCNA_01801 at 1926.631 kb on + strand, within CCNA_01801 at 1926.631 kb on + strand, within CCNA_01801 at 1926.656 kb on + strand, within CCNA_01801 at 1926.702 kb on - strand, within CCNA_01801 at 1926.704 kb on + strand, within CCNA_01801 at 1926.725 kb on + strand, within CCNA_01801 at 1926.733 kb on - strand, within CCNA_01801 at 1926.746 kb on + strand, within CCNA_01801 at 1926.746 kb on - strand, within CCNA_01801 at 1926.784 kb on - strand at 1926.801 kb on + strand at 1926.809 kb on - strand, within CCNA_01802 at 1926.916 kb on + strand at 1927.872 kb on + strand, within CCNA_01803 at 1927.897 kb on + strand, within CCNA_01803 at 1928.200 kb on - strand at 1928.223 kb on + strand at 1928.372 kb on + strand, within CCNA_01804 at 1928.395 kb on + strand, within CCNA_01804 at 1928.403 kb on + strand, within CCNA_01804 at 1928.403 kb on + strand, within CCNA_01804 at 1928.403 kb on + strand, within CCNA_01804 at 1928.411 kb on - strand, within CCNA_01804 at 1928.411 kb on - strand, within CCNA_01804 at 1928.431 kb on + strand, within CCNA_01804 at 1928.444 kb on + strand, within CCNA_01804 at 1928.444 kb on + strand, within CCNA_01804 at 1928.480 kb on + strand, within CCNA_01804 at 1928.482 kb on + strand, within CCNA_01804 at 1928.520 kb on - strand, within CCNA_01804 at 1928.534 kb on + strand, within CCNA_01804 at 1928.544 kb on + strand, within CCNA_01804 at 1928.565 kb on + strand, within CCNA_01804 at 1928.565 kb on + strand, within CCNA_01804 at 1928.587 kb on - strand, within CCNA_01804 at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.702 kb on + strand at 1928.710 kb on - strand at 1928.722 kb on + strand at 1928.730 kb on - strand at 1928.985 kb on + strand, within CCNA_01805 at 1929.115 kb on - strand, within CCNA_01805
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,925,961 + CCNA_01800 0.72 +0.3 1,926,327 + +0.4 1,926,443 - CCNA_01801 0.22 -0.6 1,926,631 + CCNA_01801 0.64 -0.8 1,926,631 + CCNA_01801 0.64 +1.0 1,926,631 + CCNA_01801 0.64 +0.5 1,926,656 + CCNA_01801 0.69 +0.5 1,926,702 - CCNA_01801 0.79 +0.0 1,926,704 + CCNA_01801 0.80 +0.3 1,926,725 + CCNA_01801 0.84 +0.3 1,926,733 - CCNA_01801 0.86 -1.4 1,926,746 + CCNA_01801 0.89 +0.2 1,926,746 - CCNA_01801 0.89 -1.1 1,926,784 - -1.0 1,926,801 + +0.5 1,926,809 - CCNA_01802 0.15 -1.2 1,926,916 + +0.6 1,927,872 + CCNA_01803 0.74 +0.6 1,927,897 + CCNA_01803 0.76 +0.6 1,928,200 - -0.8 1,928,223 + -0.7 1,928,372 + CCNA_01804 0.30 +0.8 1,928,395 + CCNA_01804 0.35 +0.4 1,928,403 + CCNA_01804 0.37 +0.0 1,928,403 + CCNA_01804 0.37 -0.0 1,928,403 + CCNA_01804 0.37 +0.5 1,928,411 - CCNA_01804 0.38 +0.2 1,928,411 - CCNA_01804 0.38 -0.3 1,928,431 + CCNA_01804 0.42 +0.0 1,928,444 + CCNA_01804 0.45 +0.4 1,928,444 + CCNA_01804 0.45 +0.4 1,928,480 + CCNA_01804 0.53 -0.6 1,928,482 + CCNA_01804 0.53 +0.3 1,928,520 - CCNA_01804 0.61 +0.9 1,928,534 + CCNA_01804 0.64 +0.6 1,928,544 + CCNA_01804 0.66 +2.9 1,928,565 + CCNA_01804 0.70 +0.0 1,928,565 + CCNA_01804 0.70 +1.1 1,928,587 - CCNA_01804 0.75 -0.9 1,928,702 + +0.4 1,928,702 + +0.7 1,928,702 + -0.0 1,928,702 + +0.1 1,928,702 + +0.8 1,928,702 + +0.3 1,928,702 + -0.0 1,928,710 - +0.1 1,928,722 + +0.5 1,928,730 - -1.6 1,928,985 + CCNA_01805 0.14 -0.7 1,929,115 - CCNA_01805 0.23 +0.7
Or see this region's nucleotide sequence