Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01778 and CCNA_01779 are separated by 32 nucleotides CCNA_01779 and CCNA_01780 are separated by 155 nucleotides
CCNA_01778: CCNA_01778 - penicillin-binding protein, at 1,905,204 to 1,906,496
_01778
CCNA_01779: CCNA_01779 - hypothetical protein, at 1,906,529 to 1,906,798
_01779
CCNA_01780: CCNA_01780 - exopolyphosphatase, at 1,906,954 to 1,908,453
_01780
Position (kb)
1906
1907 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1905.600 kb on - strand, within CCNA_01778 at 1905.675 kb on - strand, within CCNA_01778 at 1905.675 kb on - strand, within CCNA_01778 at 1905.675 kb on - strand, within CCNA_01778 at 1905.740 kb on - strand, within CCNA_01778 at 1905.740 kb on - strand, within CCNA_01778 at 1905.780 kb on - strand, within CCNA_01778 at 1905.817 kb on - strand, within CCNA_01778 at 1905.846 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.897 kb on + strand, within CCNA_01778 at 1905.898 kb on + strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.905 kb on - strand, within CCNA_01778 at 1905.906 kb on - strand, within CCNA_01778 at 1905.939 kb on + strand, within CCNA_01778 at 1905.949 kb on - strand, within CCNA_01778 at 1905.960 kb on + strand, within CCNA_01778 at 1906.033 kb on + strand, within CCNA_01778 at 1906.091 kb on - strand, within CCNA_01778 at 1906.161 kb on + strand, within CCNA_01778 at 1906.202 kb on + strand, within CCNA_01778 at 1906.210 kb on - strand, within CCNA_01778 at 1906.213 kb on + strand, within CCNA_01778 at 1906.228 kb on - strand, within CCNA_01778 at 1906.235 kb on - strand, within CCNA_01778 at 1906.248 kb on - strand, within CCNA_01778 at 1906.255 kb on + strand, within CCNA_01778 at 1906.263 kb on - strand, within CCNA_01778 at 1906.367 kb on - strand at 1906.485 kb on - strand at 1906.513 kb on + strand at 1906.521 kb on - strand at 1906.575 kb on - strand, within CCNA_01779 at 1906.575 kb on - strand, within CCNA_01779 at 1906.583 kb on - strand, within CCNA_01779 at 1906.658 kb on + strand, within CCNA_01779 at 1906.666 kb on - strand, within CCNA_01779 at 1906.724 kb on + strand, within CCNA_01779 at 1906.746 kb on + strand, within CCNA_01779 at 1906.795 kb on + strand at 1906.987 kb on + strand at 1907.075 kb on + strand at 1907.080 kb on + strand at 1907.088 kb on - strand at 1907.109 kb on - strand, within CCNA_01780 at 1907.122 kb on - strand, within CCNA_01780 at 1907.171 kb on + strand, within CCNA_01780 at 1907.178 kb on + strand, within CCNA_01780 at 1907.292 kb on - strand, within CCNA_01780 at 1907.306 kb on + strand, within CCNA_01780 at 1907.340 kb on + strand, within CCNA_01780 at 1907.490 kb on + strand, within CCNA_01780 at 1907.545 kb on + strand, within CCNA_01780 at 1907.555 kb on + strand, within CCNA_01780 at 1907.582 kb on + strand, within CCNA_01780 at 1907.653 kb on + strand, within CCNA_01780 at 1907.653 kb on + strand, within CCNA_01780 at 1907.705 kb on + strand, within CCNA_01780 at 1907.705 kb on + strand, within CCNA_01780 at 1907.705 kb on + strand, within CCNA_01780 at 1907.713 kb on - strand, within CCNA_01780 at 1907.713 kb on - strand, within CCNA_01780 at 1907.713 kb on - strand, within CCNA_01780 at 1907.742 kb on + strand, within CCNA_01780 at 1907.743 kb on - strand, within CCNA_01780 at 1907.770 kb on - strand, within CCNA_01780
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,905,600 - CCNA_01778 0.31 +0.2 1,905,675 - CCNA_01778 0.36 -0.5 1,905,675 - CCNA_01778 0.36 -0.2 1,905,675 - CCNA_01778 0.36 -0.8 1,905,740 - CCNA_01778 0.41 -0.7 1,905,740 - CCNA_01778 0.41 +0.6 1,905,780 - CCNA_01778 0.45 -0.4 1,905,817 - CCNA_01778 0.47 -0.0 1,905,846 + CCNA_01778 0.50 -0.4 1,905,897 + CCNA_01778 0.54 +0.8 1,905,897 + CCNA_01778 0.54 -0.1 1,905,897 + CCNA_01778 0.54 -1.1 1,905,897 + CCNA_01778 0.54 +0.3 1,905,897 + CCNA_01778 0.54 +0.1 1,905,897 + CCNA_01778 0.54 +0.5 1,905,897 + CCNA_01778 0.54 +0.4 1,905,897 + CCNA_01778 0.54 +0.7 1,905,897 + CCNA_01778 0.54 +0.5 1,905,897 + CCNA_01778 0.54 +0.9 1,905,897 + CCNA_01778 0.54 -0.0 1,905,897 + CCNA_01778 0.54 +1.3 1,905,897 + CCNA_01778 0.54 +2.0 1,905,897 + CCNA_01778 0.54 +0.2 1,905,897 + CCNA_01778 0.54 +0.9 1,905,897 + CCNA_01778 0.54 +0.3 1,905,897 + CCNA_01778 0.54 -0.6 1,905,897 + CCNA_01778 0.54 -0.3 1,905,898 + CCNA_01778 0.54 +1.0 1,905,905 - CCNA_01778 0.54 +1.3 1,905,905 - CCNA_01778 0.54 -0.8 1,905,905 - CCNA_01778 0.54 -0.7 1,905,905 - CCNA_01778 0.54 -1.0 1,905,905 - CCNA_01778 0.54 -2.6 1,905,905 - CCNA_01778 0.54 -0.4 1,905,905 - CCNA_01778 0.54 -0.0 1,905,905 - CCNA_01778 0.54 -0.0 1,905,905 - CCNA_01778 0.54 +1.3 1,905,905 - CCNA_01778 0.54 -0.3 1,905,905 - CCNA_01778 0.54 -0.0 1,905,906 - CCNA_01778 0.54 -0.4 1,905,939 + CCNA_01778 0.57 +0.5 1,905,949 - CCNA_01778 0.58 -0.5 1,905,960 + CCNA_01778 0.58 +0.3 1,906,033 + CCNA_01778 0.64 +0.7 1,906,091 - CCNA_01778 0.69 -0.7 1,906,161 + CCNA_01778 0.74 +0.6 1,906,202 + CCNA_01778 0.77 +1.8 1,906,210 - CCNA_01778 0.78 -0.9 1,906,213 + CCNA_01778 0.78 +1.0 1,906,228 - CCNA_01778 0.79 +0.3 1,906,235 - CCNA_01778 0.80 +0.2 1,906,248 - CCNA_01778 0.81 +0.2 1,906,255 + CCNA_01778 0.81 +1.1 1,906,263 - CCNA_01778 0.82 -0.4 1,906,367 - +0.4 1,906,485 - -1.0 1,906,513 + +0.3 1,906,521 - +0.1 1,906,575 - CCNA_01779 0.17 +0.3 1,906,575 - CCNA_01779 0.17 -0.3 1,906,583 - CCNA_01779 0.20 +0.7 1,906,658 + CCNA_01779 0.48 +0.1 1,906,666 - CCNA_01779 0.51 +0.5 1,906,724 + CCNA_01779 0.72 -0.9 1,906,746 + CCNA_01779 0.80 +0.8 1,906,795 + -1.4 1,906,987 + -0.9 1,907,075 + -0.3 1,907,080 + -0.4 1,907,088 - -0.4 1,907,109 - CCNA_01780 0.10 +0.9 1,907,122 - CCNA_01780 0.11 -0.5 1,907,171 + CCNA_01780 0.14 +0.0 1,907,178 + CCNA_01780 0.15 +1.4 1,907,292 - CCNA_01780 0.23 +0.2 1,907,306 + CCNA_01780 0.23 +0.2 1,907,340 + CCNA_01780 0.26 +0.1 1,907,490 + CCNA_01780 0.36 -0.5 1,907,545 + CCNA_01780 0.39 +0.6 1,907,555 + CCNA_01780 0.40 -0.7 1,907,582 + CCNA_01780 0.42 -0.8 1,907,653 + CCNA_01780 0.47 -0.5 1,907,653 + CCNA_01780 0.47 -0.1 1,907,705 + CCNA_01780 0.50 -0.5 1,907,705 + CCNA_01780 0.50 -0.3 1,907,705 + CCNA_01780 0.50 +1.6 1,907,713 - CCNA_01780 0.51 +0.2 1,907,713 - CCNA_01780 0.51 -0.0 1,907,713 - CCNA_01780 0.51 -0.5 1,907,742 + CCNA_01780 0.53 -0.7 1,907,743 - CCNA_01780 0.53 -2.0 1,907,770 - CCNA_01780 0.54 +1.0
Or see this region's nucleotide sequence