Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01777

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01776 and CCNA_01777 are separated by 249 nucleotidesCCNA_01777 and CCNA_01778 are separated by 104 nucleotides CCNA_01776: CCNA_01776 - ribonuclease D, at 1,901,998 to 1,903,167 _01776 CCNA_01777: CCNA_01777 - hybrid sensor histidine kinase/receiver domain protein, at 1,903,417 to 1,905,099 _01777 CCNA_01778: CCNA_01778 - penicillin-binding protein, at 1,905,204 to 1,906,496 _01778 Position (kb) 1903 1904 1905 1906Strain fitness (log2 ratio) -2 -1 0 1 2at 1902.857 kb on + strand, within CCNA_01776at 1903.132 kb on - strandat 1903.244 kb on - strandat 1903.343 kb on + strandat 1903.374 kb on - strandat 1903.381 kb on - strandat 1903.421 kb on + strandat 1903.426 kb on + strandat 1903.517 kb on + strandat 1903.517 kb on + strandat 1903.525 kb on - strandat 1903.527 kb on + strandat 1903.535 kb on - strandat 1903.545 kb on - strandat 1903.594 kb on + strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.608 kb on + strand, within CCNA_01777at 1903.645 kb on - strand, within CCNA_01777at 1903.759 kb on + strand, within CCNA_01777at 1903.772 kb on - strand, within CCNA_01777at 1903.774 kb on + strand, within CCNA_01777at 1903.789 kb on + strand, within CCNA_01777at 1903.811 kb on + strand, within CCNA_01777at 1903.819 kb on + strand, within CCNA_01777at 1903.933 kb on + strand, within CCNA_01777at 1903.938 kb on + strand, within CCNA_01777at 1903.953 kb on - strand, within CCNA_01777at 1904.032 kb on + strand, within CCNA_01777at 1904.059 kb on - strand, within CCNA_01777at 1904.114 kb on + strand, within CCNA_01777at 1904.122 kb on - strand, within CCNA_01777at 1904.137 kb on + strand, within CCNA_01777at 1904.165 kb on - strand, within CCNA_01777at 1904.168 kb on + strand, within CCNA_01777at 1904.178 kb on + strand, within CCNA_01777at 1904.178 kb on + strand, within CCNA_01777at 1904.192 kb on - strand, within CCNA_01777at 1904.219 kb on + strand, within CCNA_01777at 1904.277 kb on + strand, within CCNA_01777at 1904.277 kb on + strand, within CCNA_01777at 1904.280 kb on - strand, within CCNA_01777at 1904.285 kb on - strand, within CCNA_01777at 1904.290 kb on + strand, within CCNA_01777at 1904.296 kb on + strand, within CCNA_01777at 1904.299 kb on - strand, within CCNA_01777at 1904.299 kb on - strand, within CCNA_01777at 1904.299 kb on - strand, within CCNA_01777at 1904.383 kb on + strand, within CCNA_01777at 1904.391 kb on - strand, within CCNA_01777at 1904.404 kb on + strand, within CCNA_01777at 1904.485 kb on - strand, within CCNA_01777at 1904.519 kb on - strand, within CCNA_01777at 1904.527 kb on - strand, within CCNA_01777at 1904.561 kb on + strand, within CCNA_01777at 1904.566 kb on + strand, within CCNA_01777at 1904.566 kb on + strand, within CCNA_01777at 1904.566 kb on + strand, within CCNA_01777at 1904.599 kb on + strand, within CCNA_01777at 1904.669 kb on - strand, within CCNA_01777at 1904.726 kb on - strand, within CCNA_01777at 1904.737 kb on + strand, within CCNA_01777at 1904.747 kb on - strand, within CCNA_01777at 1904.755 kb on - strand, within CCNA_01777at 1904.801 kb on + strand, within CCNA_01777at 1904.814 kb on + strand, within CCNA_01777at 1904.814 kb on + strand, within CCNA_01777at 1904.822 kb on - strand, within CCNA_01777at 1904.822 kb on - strand, within CCNA_01777at 1904.853 kb on - strand, within CCNA_01777at 1904.855 kb on + strand, within CCNA_01777at 1904.855 kb on + strand, within CCNA_01777at 1904.865 kb on + strand, within CCNA_01777at 1904.875 kb on - strand, within CCNA_01777at 1904.924 kb on + strand, within CCNA_01777at 1904.924 kb on + strand, within CCNA_01777at 1904.932 kb on - strandat 1904.932 kb on - strandat 1904.932 kb on - strandat 1904.932 kb on - strandat 1904.956 kb on + strandat 1904.972 kb on + strandat 1904.998 kb on + strandat 1905.006 kb on - strandat 1905.033 kb on + strandat 1905.034 kb on + strandat 1905.058 kb on + strandat 1905.088 kb on - strandat 1905.095 kb on + strandat 1905.103 kb on - strandat 1905.103 kb on - strandat 1905.103 kb on - strandat 1905.105 kb on + strandat 1905.113 kb on - strandat 1905.250 kb on + strandat 1905.504 kb on + strand, within CCNA_01778at 1905.512 kb on - strand, within CCNA_01778at 1905.517 kb on - strand, within CCNA_01778at 1905.600 kb on - strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.675 kb on - strand, within CCNA_01778at 1905.740 kb on - strand, within CCNA_01778at 1905.740 kb on - strand, within CCNA_01778at 1905.780 kb on - strand, within CCNA_01778at 1905.817 kb on - strand, within CCNA_01778at 1905.846 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.897 kb on + strand, within CCNA_01778at 1905.898 kb on + strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.905 kb on - strand, within CCNA_01778at 1905.906 kb on - strand, within CCNA_01778at 1905.939 kb on + strand, within CCNA_01778at 1905.949 kb on - strand, within CCNA_01778at 1905.960 kb on + strand, within CCNA_01778at 1906.033 kb on + strand, within CCNA_01778at 1906.091 kb on - strand, within CCNA_01778

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,902,857 + CCNA_01776 0.73 -0.2
1,903,132 - +0.3
1,903,244 - -0.4
1,903,343 + +0.8
1,903,374 - -0.6
1,903,381 - +2.2
1,903,421 + +0.5
1,903,426 + +0.3
1,903,517 + +0.6
1,903,517 + +2.2
1,903,525 - -0.9
1,903,527 + +0.2
1,903,535 - -2.3
1,903,545 - -1.2
1,903,594 + CCNA_01777 0.11 +0.5
1,903,602 - CCNA_01777 0.11 +0.2
1,903,602 - CCNA_01777 0.11 -0.1
1,903,602 - CCNA_01777 0.11 -1.0
1,903,608 + CCNA_01777 0.11 -0.4
1,903,645 - CCNA_01777 0.14 -1.2
1,903,759 + CCNA_01777 0.20 +0.5
1,903,772 - CCNA_01777 0.21 -0.1
1,903,774 + CCNA_01777 0.21 +0.3
1,903,789 + CCNA_01777 0.22 -0.0
1,903,811 + CCNA_01777 0.23 +0.6
1,903,819 + CCNA_01777 0.24 -0.3
1,903,933 + CCNA_01777 0.31 +0.3
1,903,938 + CCNA_01777 0.31 -0.3
1,903,953 - CCNA_01777 0.32 -0.7
1,904,032 + CCNA_01777 0.37 +0.8
1,904,059 - CCNA_01777 0.38 +0.4
1,904,114 + CCNA_01777 0.41 +0.9
1,904,122 - CCNA_01777 0.42 -0.4
1,904,137 + CCNA_01777 0.43 +0.3
1,904,165 - CCNA_01777 0.44 -0.7
1,904,168 + CCNA_01777 0.45 +0.4
1,904,178 + CCNA_01777 0.45 -0.2
1,904,178 + CCNA_01777 0.45 +0.3
1,904,192 - CCNA_01777 0.46 -0.5
1,904,219 + CCNA_01777 0.48 +0.1
1,904,277 + CCNA_01777 0.51 +0.4
1,904,277 + CCNA_01777 0.51 -0.1
1,904,280 - CCNA_01777 0.51 -0.2
1,904,285 - CCNA_01777 0.52 +0.8
1,904,290 + CCNA_01777 0.52 +0.8
1,904,296 + CCNA_01777 0.52 +0.8
1,904,299 - CCNA_01777 0.52 +2.5
1,904,299 - CCNA_01777 0.52 -1.3
1,904,299 - CCNA_01777 0.52 +1.0
1,904,383 + CCNA_01777 0.57 +0.4
1,904,391 - CCNA_01777 0.58 +0.0
1,904,404 + CCNA_01777 0.59 -0.8
1,904,485 - CCNA_01777 0.63 +0.6
1,904,519 - CCNA_01777 0.65 -0.7
1,904,527 - CCNA_01777 0.66 +0.5
1,904,561 + CCNA_01777 0.68 +0.3
1,904,566 + CCNA_01777 0.68 +0.6
1,904,566 + CCNA_01777 0.68 +0.4
1,904,566 + CCNA_01777 0.68 +0.3
1,904,599 + CCNA_01777 0.70 -0.6
1,904,669 - CCNA_01777 0.74 -1.3
1,904,726 - CCNA_01777 0.78 +0.4
1,904,737 + CCNA_01777 0.78 +0.1
1,904,747 - CCNA_01777 0.79 -1.8
1,904,755 - CCNA_01777 0.80 -0.5
1,904,801 + CCNA_01777 0.82 -1.6
1,904,814 + CCNA_01777 0.83 +0.5
1,904,814 + CCNA_01777 0.83 -0.5
1,904,822 - CCNA_01777 0.83 -0.3
1,904,822 - CCNA_01777 0.83 -0.6
1,904,853 - CCNA_01777 0.85 +0.6
1,904,855 + CCNA_01777 0.85 +0.4
1,904,855 + CCNA_01777 0.85 +0.5
1,904,865 + CCNA_01777 0.86 +0.6
1,904,875 - CCNA_01777 0.87 -0.0
1,904,924 + CCNA_01777 0.90 +0.5
1,904,924 + CCNA_01777 0.90 +0.2
1,904,932 - -2.7
1,904,932 - -0.3
1,904,932 - -0.2
1,904,932 - -1.6
1,904,956 + +0.7
1,904,972 + +1.9
1,904,998 + -0.3
1,905,006 - +0.4
1,905,033 + -0.2
1,905,034 + +0.2
1,905,058 + +0.2
1,905,088 - +0.6
1,905,095 + +0.6
1,905,103 - -0.3
1,905,103 - -0.4
1,905,103 - -0.2
1,905,105 + -0.3
1,905,113 - +0.0
1,905,250 + +0.6
1,905,504 + CCNA_01778 0.23 +0.1
1,905,512 - CCNA_01778 0.24 -1.3
1,905,517 - CCNA_01778 0.24 -0.8
1,905,600 - CCNA_01778 0.31 +0.2
1,905,675 - CCNA_01778 0.36 -0.5
1,905,675 - CCNA_01778 0.36 -0.2
1,905,675 - CCNA_01778 0.36 -0.8
1,905,740 - CCNA_01778 0.41 -0.7
1,905,740 - CCNA_01778 0.41 +0.6
1,905,780 - CCNA_01778 0.45 -0.4
1,905,817 - CCNA_01778 0.47 -0.0
1,905,846 + CCNA_01778 0.50 -0.4
1,905,897 + CCNA_01778 0.54 +0.8
1,905,897 + CCNA_01778 0.54 -0.1
1,905,897 + CCNA_01778 0.54 -1.1
1,905,897 + CCNA_01778 0.54 +0.3
1,905,897 + CCNA_01778 0.54 +0.1
1,905,897 + CCNA_01778 0.54 +0.5
1,905,897 + CCNA_01778 0.54 +0.4
1,905,897 + CCNA_01778 0.54 +0.7
1,905,897 + CCNA_01778 0.54 +0.5
1,905,897 + CCNA_01778 0.54 +0.9
1,905,897 + CCNA_01778 0.54 -0.0
1,905,897 + CCNA_01778 0.54 +1.3
1,905,897 + CCNA_01778 0.54 +2.0
1,905,897 + CCNA_01778 0.54 +0.2
1,905,897 + CCNA_01778 0.54 +0.9
1,905,897 + CCNA_01778 0.54 +0.3
1,905,897 + CCNA_01778 0.54 -0.6
1,905,897 + CCNA_01778 0.54 -0.3
1,905,898 + CCNA_01778 0.54 +1.0
1,905,905 - CCNA_01778 0.54 +1.3
1,905,905 - CCNA_01778 0.54 -0.8
1,905,905 - CCNA_01778 0.54 -0.7
1,905,905 - CCNA_01778 0.54 -1.0
1,905,905 - CCNA_01778 0.54 -2.6
1,905,905 - CCNA_01778 0.54 -0.4
1,905,905 - CCNA_01778 0.54 -0.0
1,905,905 - CCNA_01778 0.54 -0.0
1,905,905 - CCNA_01778 0.54 +1.3
1,905,905 - CCNA_01778 0.54 -0.3
1,905,905 - CCNA_01778 0.54 -0.0
1,905,906 - CCNA_01778 0.54 -0.4
1,905,939 + CCNA_01778 0.57 +0.5
1,905,949 - CCNA_01778 0.58 -0.5
1,905,960 + CCNA_01778 0.58 +0.3
1,906,033 + CCNA_01778 0.64 +0.7
1,906,091 - CCNA_01778 0.69 -0.7

Or see this region's nucleotide sequence