Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01590 and CCNA_01591 overlap by 25 nucleotides CCNA_01591 and CCNA_01592 are separated by 115 nucleotides CCNA_01592 and CCNA_01593 are separated by 138 nucleotides
CCNA_01590: CCNA_01590 - NAD-dependent DNA ligase, at 1,709,381 to 1,711,732
_01590
CCNA_01591: CCNA_01591 - DNA polymerase III epsilon-like protein, at 1,711,708 to 1,712,337
_01591
CCNA_01592: CCNA_01592 - SN-glycerol-3-phosphate transport ATP-binding protein, at 1,712,453 to 1,712,881
_01592
CCNA_01593: CCNA_01593 - Xaa-pro aminopeptidase, at 1,713,020 to 1,714,831
_01593
Position (kb)
1711
1712
1713 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1711.760 kb on + strand at 1711.768 kb on - strand at 1711.781 kb on - strand, within CCNA_01591 at 1711.844 kb on - strand, within CCNA_01591 at 1711.870 kb on + strand, within CCNA_01591 at 1711.884 kb on + strand, within CCNA_01591 at 1711.890 kb on - strand, within CCNA_01591 at 1711.936 kb on - strand, within CCNA_01591 at 1711.996 kb on + strand, within CCNA_01591 at 1712.033 kb on + strand, within CCNA_01591 at 1712.039 kb on - strand, within CCNA_01591 at 1712.062 kb on - strand, within CCNA_01591 at 1712.165 kb on - strand, within CCNA_01591 at 1712.304 kb on - strand at 1712.339 kb on - strand at 1712.399 kb on - strand at 1712.422 kb on - strand at 1712.539 kb on + strand, within CCNA_01592 at 1712.548 kb on - strand, within CCNA_01592 at 1712.562 kb on - strand, within CCNA_01592 at 1712.611 kb on + strand, within CCNA_01592 at 1712.682 kb on + strand, within CCNA_01592 at 1712.800 kb on + strand, within CCNA_01592 at 1712.959 kb on + strand at 1712.967 kb on - strand at 1712.981 kb on + strand at 1712.990 kb on - strand at 1713.009 kb on - strand at 1713.058 kb on - strand at 1713.091 kb on + strand at 1713.091 kb on + strand at 1713.140 kb on - strand at 1713.165 kb on - strand at 1713.179 kb on + strand at 1713.187 kb on - strand at 1713.264 kb on + strand, within CCNA_01593
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,711,760 + +0.5 1,711,768 - -1.1 1,711,781 - CCNA_01591 0.12 -0.4 1,711,844 - CCNA_01591 0.22 -1.3 1,711,870 + CCNA_01591 0.26 +0.5 1,711,884 + CCNA_01591 0.28 +3.7 1,711,890 - CCNA_01591 0.29 -0.1 1,711,936 - CCNA_01591 0.36 -0.8 1,711,996 + CCNA_01591 0.46 -0.4 1,712,033 + CCNA_01591 0.52 -0.1 1,712,039 - CCNA_01591 0.53 +0.2 1,712,062 - CCNA_01591 0.56 +0.7 1,712,165 - CCNA_01591 0.73 +0.4 1,712,304 - -0.1 1,712,339 - +1.4 1,712,399 - -0.1 1,712,422 - +0.3 1,712,539 + CCNA_01592 0.20 +1.0 1,712,548 - CCNA_01592 0.22 -0.3 1,712,562 - CCNA_01592 0.25 +0.5 1,712,611 + CCNA_01592 0.37 +0.0 1,712,682 + CCNA_01592 0.53 +0.6 1,712,800 + CCNA_01592 0.81 +1.0 1,712,959 + +0.5 1,712,967 - +0.5 1,712,981 + +0.2 1,712,990 - +2.1 1,713,009 - -0.1 1,713,058 - +0.5 1,713,091 + -1.4 1,713,091 + +0.2 1,713,140 - +0.5 1,713,165 - +0.0 1,713,179 + -0.8 1,713,187 - +0.3 1,713,264 + CCNA_01593 0.13 +0.3
Or see this region's nucleotide sequence