Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01522 and CCNA_01523 are separated by 108 nucleotides CCNA_01523 and CCNA_01524 are separated by 160 nucleotides
CCNA_01522: CCNA_01522 - ATP-dependent protease subunit, at 1,630,557 to 1,631,426
_01522
CCNA_01523: CCNA_01523 - acetyltransferase flmH, at 1,631,535 to 1,632,116
_01523
CCNA_01524: CCNA_01524 - FlbA protein, at 1,632,277 to 1,634,067
_01524
Position (kb)
1631
1632
1633 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1630.563 kb on + strand at 1630.563 kb on - strand at 1630.575 kb on + strand at 1630.644 kb on - strand, within CCNA_01522 at 1630.653 kb on + strand, within CCNA_01522 at 1630.683 kb on - strand, within CCNA_01522 at 1630.702 kb on - strand, within CCNA_01522 at 1630.702 kb on - strand, within CCNA_01522 at 1630.727 kb on + strand, within CCNA_01522 at 1630.753 kb on + strand, within CCNA_01522 at 1630.753 kb on - strand, within CCNA_01522 at 1630.780 kb on + strand, within CCNA_01522 at 1630.780 kb on - strand, within CCNA_01522 at 1630.797 kb on - strand, within CCNA_01522 at 1630.823 kb on + strand, within CCNA_01522 at 1630.845 kb on - strand, within CCNA_01522 at 1630.860 kb on + strand, within CCNA_01522 at 1630.964 kb on - strand, within CCNA_01522 at 1630.966 kb on + strand, within CCNA_01522 at 1630.977 kb on + strand, within CCNA_01522 at 1631.006 kb on - strand, within CCNA_01522 at 1631.033 kb on + strand, within CCNA_01522 at 1631.041 kb on - strand, within CCNA_01522 at 1631.063 kb on - strand, within CCNA_01522 at 1631.106 kb on + strand, within CCNA_01522 at 1631.116 kb on + strand, within CCNA_01522 at 1631.116 kb on + strand, within CCNA_01522 at 1631.121 kb on + strand, within CCNA_01522 at 1631.152 kb on + strand, within CCNA_01522 at 1631.152 kb on + strand, within CCNA_01522 at 1631.175 kb on - strand, within CCNA_01522 at 1631.239 kb on + strand, within CCNA_01522 at 1631.256 kb on + strand, within CCNA_01522 at 1631.269 kb on + strand, within CCNA_01522 at 1631.287 kb on + strand, within CCNA_01522 at 1631.300 kb on - strand, within CCNA_01522 at 1631.323 kb on + strand, within CCNA_01522 at 1631.331 kb on - strand, within CCNA_01522 at 1631.371 kb on + strand at 1631.379 kb on - strand at 1631.421 kb on + strand at 1631.460 kb on - strand at 1631.513 kb on - strand at 1631.513 kb on - strand at 1631.520 kb on - strand at 1631.566 kb on + strand at 1631.566 kb on + strand at 1631.566 kb on + strand at 1631.566 kb on + strand at 1631.566 kb on + strand at 1631.566 kb on + strand at 1631.574 kb on - strand at 1631.574 kb on - strand at 1631.574 kb on - strand at 1631.586 kb on - strand at 1631.586 kb on - strand at 1631.622 kb on - strand, within CCNA_01523 at 1631.633 kb on + strand, within CCNA_01523 at 1631.633 kb on + strand, within CCNA_01523 at 1631.641 kb on - strand, within CCNA_01523 at 1631.641 kb on - strand, within CCNA_01523 at 1631.648 kb on + strand, within CCNA_01523 at 1631.664 kb on - strand, within CCNA_01523 at 1631.693 kb on - strand, within CCNA_01523 at 1631.706 kb on + strand, within CCNA_01523 at 1631.714 kb on + strand, within CCNA_01523 at 1631.714 kb on - strand, within CCNA_01523 at 1631.763 kb on - strand, within CCNA_01523 at 1631.769 kb on + strand, within CCNA_01523 at 1631.777 kb on - strand, within CCNA_01523 at 1631.821 kb on - strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.843 kb on + strand, within CCNA_01523 at 1631.851 kb on - strand, within CCNA_01523 at 1631.851 kb on - strand, within CCNA_01523 at 1631.851 kb on - strand, within CCNA_01523 at 1631.851 kb on - strand, within CCNA_01523 at 1631.851 kb on - strand, within CCNA_01523 at 1631.904 kb on - strand, within CCNA_01523 at 1631.905 kb on + strand, within CCNA_01523 at 1631.918 kb on - strand, within CCNA_01523 at 1631.939 kb on + strand, within CCNA_01523 at 1631.953 kb on + strand, within CCNA_01523 at 1631.965 kb on - strand, within CCNA_01523 at 1632.007 kb on - strand, within CCNA_01523 at 1632.032 kb on - strand, within CCNA_01523 at 1632.035 kb on - strand, within CCNA_01523 at 1632.035 kb on - strand, within CCNA_01523 at 1632.068 kb on - strand at 1632.070 kb on - strand at 1632.091 kb on + strand at 1632.103 kb on + strand at 1632.109 kb on - strand at 1632.206 kb on + strand at 1632.207 kb on + strand at 1632.208 kb on - strand at 1632.247 kb on + strand at 1632.247 kb on + strand at 1632.247 kb on + strand at 1632.255 kb on - strand at 1632.255 kb on - strand at 1632.255 kb on - strand at 1632.261 kb on + strand at 1632.261 kb on + strand at 1632.261 kb on + strand at 1632.264 kb on - strand at 1632.335 kb on + strand at 1632.343 kb on - strand at 1632.343 kb on - strand at 1632.343 kb on - strand at 1632.348 kb on - strand at 1632.388 kb on - strand at 1632.390 kb on - strand at 1632.416 kb on + strand at 1632.424 kb on - strand at 1632.470 kb on + strand, within CCNA_01524 at 1632.493 kb on + strand, within CCNA_01524 at 1632.493 kb on + strand, within CCNA_01524 at 1632.493 kb on + strand, within CCNA_01524 at 1632.501 kb on - strand, within CCNA_01524 at 1632.508 kb on - strand, within CCNA_01524 at 1632.535 kb on + strand, within CCNA_01524 at 1632.571 kb on + strand, within CCNA_01524 at 1632.576 kb on + strand, within CCNA_01524 at 1632.639 kb on + strand, within CCNA_01524 at 1632.639 kb on + strand, within CCNA_01524 at 1632.639 kb on + strand, within CCNA_01524 at 1632.642 kb on - strand, within CCNA_01524 at 1632.647 kb on - strand, within CCNA_01524 at 1632.647 kb on - strand, within CCNA_01524 at 1632.649 kb on + strand, within CCNA_01524 at 1632.716 kb on - strand, within CCNA_01524 at 1632.719 kb on + strand, within CCNA_01524 at 1632.719 kb on + strand, within CCNA_01524 at 1632.727 kb on - strand, within CCNA_01524 at 1632.741 kb on + strand, within CCNA_01524 at 1632.746 kb on + strand, within CCNA_01524 at 1632.749 kb on - strand, within CCNA_01524 at 1632.754 kb on - strand, within CCNA_01524 at 1632.797 kb on + strand, within CCNA_01524 at 1632.828 kb on + strand, within CCNA_01524 at 1632.833 kb on + strand, within CCNA_01524 at 1632.922 kb on - strand, within CCNA_01524 at 1632.941 kb on + strand, within CCNA_01524 at 1632.941 kb on + strand, within CCNA_01524 at 1632.949 kb on - strand, within CCNA_01524 at 1632.949 kb on - strand, within CCNA_01524 at 1632.958 kb on + strand, within CCNA_01524 at 1632.968 kb on - strand, within CCNA_01524 at 1633.036 kb on + strand, within CCNA_01524 at 1633.036 kb on + strand, within CCNA_01524 at 1633.044 kb on - strand, within CCNA_01524 at 1633.064 kb on + strand, within CCNA_01524 at 1633.098 kb on + strand, within CCNA_01524 at 1633.098 kb on + strand, within CCNA_01524 at 1633.106 kb on - strand, within CCNA_01524
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,630,563 + -1.5 1,630,563 - -0.3 1,630,575 + -0.1 1,630,644 - CCNA_01522 0.10 -0.5 1,630,653 + CCNA_01522 0.11 -0.0 1,630,683 - CCNA_01522 0.14 +0.8 1,630,702 - CCNA_01522 0.17 +0.8 1,630,702 - CCNA_01522 0.17 +0.2 1,630,727 + CCNA_01522 0.20 +0.2 1,630,753 + CCNA_01522 0.23 -1.1 1,630,753 - CCNA_01522 0.23 +1.4 1,630,780 + CCNA_01522 0.26 -0.8 1,630,780 - CCNA_01522 0.26 +0.7 1,630,797 - CCNA_01522 0.28 -0.0 1,630,823 + CCNA_01522 0.31 -0.2 1,630,845 - CCNA_01522 0.33 -0.6 1,630,860 + CCNA_01522 0.35 -0.1 1,630,964 - CCNA_01522 0.47 -1.0 1,630,966 + CCNA_01522 0.47 -0.6 1,630,977 + CCNA_01522 0.48 -0.2 1,631,006 - CCNA_01522 0.52 +0.0 1,631,033 + CCNA_01522 0.55 +0.8 1,631,041 - CCNA_01522 0.56 +0.1 1,631,063 - CCNA_01522 0.58 -0.8 1,631,106 + CCNA_01522 0.63 +1.1 1,631,116 + CCNA_01522 0.64 +0.2 1,631,116 + CCNA_01522 0.64 -0.8 1,631,121 + CCNA_01522 0.65 +0.5 1,631,152 + CCNA_01522 0.68 +0.1 1,631,152 + CCNA_01522 0.68 +0.8 1,631,175 - CCNA_01522 0.71 +1.4 1,631,239 + CCNA_01522 0.78 -0.5 1,631,256 + CCNA_01522 0.80 -0.8 1,631,269 + CCNA_01522 0.82 -1.5 1,631,287 + CCNA_01522 0.84 -0.7 1,631,300 - CCNA_01522 0.85 +1.3 1,631,323 + CCNA_01522 0.88 -1.2 1,631,331 - CCNA_01522 0.89 -0.9 1,631,371 + -0.5 1,631,379 - -0.0 1,631,421 + +0.2 1,631,460 - +0.5 1,631,513 - +1.2 1,631,513 - +0.1 1,631,520 - +0.1 1,631,566 + -2.2 1,631,566 + -1.2 1,631,566 + -1.0 1,631,566 + -1.2 1,631,566 + +1.1 1,631,566 + +0.6 1,631,574 - +0.2 1,631,574 - -1.4 1,631,574 - +0.5 1,631,586 - -1.2 1,631,586 - -0.1 1,631,622 - CCNA_01523 0.15 +0.1 1,631,633 + CCNA_01523 0.17 -1.1 1,631,633 + CCNA_01523 0.17 -0.4 1,631,641 - CCNA_01523 0.18 -0.1 1,631,641 - CCNA_01523 0.18 -0.7 1,631,648 + CCNA_01523 0.19 -0.8 1,631,664 - CCNA_01523 0.22 -1.2 1,631,693 - CCNA_01523 0.27 -0.4 1,631,706 + CCNA_01523 0.29 -0.5 1,631,714 + CCNA_01523 0.31 -1.6 1,631,714 - CCNA_01523 0.31 -0.8 1,631,763 - CCNA_01523 0.39 +0.2 1,631,769 + CCNA_01523 0.40 +0.0 1,631,777 - CCNA_01523 0.42 -0.0 1,631,821 - CCNA_01523 0.49 -0.0 1,631,843 + CCNA_01523 0.53 -1.1 1,631,843 + CCNA_01523 0.53 +1.2 1,631,843 + CCNA_01523 0.53 -0.4 1,631,843 + CCNA_01523 0.53 +0.4 1,631,843 + CCNA_01523 0.53 -0.1 1,631,843 + CCNA_01523 0.53 -0.7 1,631,843 + CCNA_01523 0.53 +0.6 1,631,843 + CCNA_01523 0.53 -1.1 1,631,843 + CCNA_01523 0.53 -1.4 1,631,851 - CCNA_01523 0.54 -1.1 1,631,851 - CCNA_01523 0.54 -0.1 1,631,851 - CCNA_01523 0.54 +0.5 1,631,851 - CCNA_01523 0.54 -0.1 1,631,851 - CCNA_01523 0.54 -0.2 1,631,904 - CCNA_01523 0.63 -2.1 1,631,905 + CCNA_01523 0.64 -0.3 1,631,918 - CCNA_01523 0.66 -1.1 1,631,939 + CCNA_01523 0.69 -0.8 1,631,953 + CCNA_01523 0.72 +0.1 1,631,965 - CCNA_01523 0.74 +0.0 1,632,007 - CCNA_01523 0.81 -0.9 1,632,032 - CCNA_01523 0.85 -1.1 1,632,035 - CCNA_01523 0.86 -1.6 1,632,035 - CCNA_01523 0.86 +0.1 1,632,068 - +0.0 1,632,070 - +0.8 1,632,091 + -2.0 1,632,103 + +1.2 1,632,109 - +2.6 1,632,206 + +0.0 1,632,207 + -1.2 1,632,208 - +0.6 1,632,247 + +1.2 1,632,247 + -0.1 1,632,247 + +0.1 1,632,255 - -0.3 1,632,255 - -0.2 1,632,255 - -0.9 1,632,261 + -0.4 1,632,261 + -1.8 1,632,261 + +0.2 1,632,264 - +0.6 1,632,335 + +1.4 1,632,343 - +0.5 1,632,343 - -0.5 1,632,343 - +0.1 1,632,348 - -0.7 1,632,388 - +0.1 1,632,390 - -0.3 1,632,416 + +1.2 1,632,424 - +0.0 1,632,470 + CCNA_01524 0.11 +0.2 1,632,493 + CCNA_01524 0.12 +0.4 1,632,493 + CCNA_01524 0.12 -0.2 1,632,493 + CCNA_01524 0.12 -1.9 1,632,501 - CCNA_01524 0.13 +1.5 1,632,508 - CCNA_01524 0.13 +0.2 1,632,535 + CCNA_01524 0.14 +0.6 1,632,571 + CCNA_01524 0.16 +0.2 1,632,576 + CCNA_01524 0.17 +0.5 1,632,639 + CCNA_01524 0.20 +1.0 1,632,639 + CCNA_01524 0.20 -0.3 1,632,639 + CCNA_01524 0.20 +0.8 1,632,642 - CCNA_01524 0.20 -0.7 1,632,647 - CCNA_01524 0.21 -0.1 1,632,647 - CCNA_01524 0.21 +0.6 1,632,649 + CCNA_01524 0.21 +0.5 1,632,716 - CCNA_01524 0.25 -0.0 1,632,719 + CCNA_01524 0.25 -2.3 1,632,719 + CCNA_01524 0.25 -0.6 1,632,727 - CCNA_01524 0.25 +0.9 1,632,741 + CCNA_01524 0.26 -0.2 1,632,746 + CCNA_01524 0.26 -0.6 1,632,749 - CCNA_01524 0.26 -0.5 1,632,754 - CCNA_01524 0.27 +0.8 1,632,797 + CCNA_01524 0.29 -0.5 1,632,828 + CCNA_01524 0.31 -0.2 1,632,833 + CCNA_01524 0.31 +0.5 1,632,922 - CCNA_01524 0.36 +0.3 1,632,941 + CCNA_01524 0.37 -2.4 1,632,941 + CCNA_01524 0.37 -0.3 1,632,949 - CCNA_01524 0.38 +0.0 1,632,949 - CCNA_01524 0.38 +0.9 1,632,958 + CCNA_01524 0.38 +0.1 1,632,968 - CCNA_01524 0.39 -0.1 1,633,036 + CCNA_01524 0.42 -0.3 1,633,036 + CCNA_01524 0.42 +1.0 1,633,044 - CCNA_01524 0.43 -0.4 1,633,064 + CCNA_01524 0.44 -0.0 1,633,098 + CCNA_01524 0.46 -0.4 1,633,098 + CCNA_01524 0.46 -0.8 1,633,106 - CCNA_01524 0.46 +0.7
Or see this region's nucleotide sequence