Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01377 and CCNA_01378 are separated by 295 nucleotides CCNA_01378 and CCNA_01379 are separated by 124 nucleotides CCNA_01379 and CCNA_01380 are separated by 128 nucleotides CCNA_01380 and CCNA_01381 are separated by 126 nucleotides
CCNA_01377: CCNA_01377 - hypothetical protein, at 1,492,093 to 1,492,239
_01377
CCNA_01378: CCNA_01378 - protein-L-isoaspartate O-methyltransferase, at 1,492,535 to 1,493,107
_01378
CCNA_01379: CCNA_01379 - type I secretion outer membrane protein rsaFb, at 1,493,232 to 1,494,683
_01379
CCNA_01380: CCNA_01380 - pole-organizing protein popZ, at 1,494,812 to 1,495,345
_01380
CCNA_01381: CCNA_01381 - valyl-tRNA synthetase, at 1,495,472 to 1,498,192
_01381
Position (kb)
1493
1494
1495 Strain fitness (log2 ratio)
-1
0
1
2 at 1492.312 kb on - strand at 1492.324 kb on + strand at 1492.327 kb on - strand at 1492.334 kb on + strand at 1492.375 kb on + strand at 1492.375 kb on + strand at 1492.388 kb on + strand at 1492.494 kb on + strand at 1492.494 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.513 kb on + strand at 1492.521 kb on - strand at 1492.521 kb on - strand at 1492.569 kb on - strand at 1492.861 kb on + strand, within CCNA_01378 at 1493.100 kb on + strand at 1493.209 kb on + strand at 1493.246 kb on - strand at 1493.384 kb on + strand, within CCNA_01379 at 1493.479 kb on - strand, within CCNA_01379 at 1493.598 kb on + strand, within CCNA_01379 at 1493.643 kb on + strand, within CCNA_01379 at 1493.643 kb on + strand, within CCNA_01379 at 1493.648 kb on + strand, within CCNA_01379 at 1493.651 kb on - strand, within CCNA_01379 at 1493.653 kb on + strand, within CCNA_01379 at 1493.658 kb on + strand, within CCNA_01379 at 1493.658 kb on + strand, within CCNA_01379 at 1493.661 kb on - strand, within CCNA_01379 at 1493.663 kb on + strand, within CCNA_01379 at 1493.820 kb on + strand, within CCNA_01379 at 1493.825 kb on + strand, within CCNA_01379 at 1494.005 kb on + strand, within CCNA_01379 at 1494.066 kb on + strand, within CCNA_01379 at 1494.189 kb on + strand, within CCNA_01379 at 1494.234 kb on + strand, within CCNA_01379 at 1494.344 kb on + strand, within CCNA_01379 at 1494.344 kb on + strand, within CCNA_01379 at 1494.352 kb on - strand, within CCNA_01379 at 1494.408 kb on + strand, within CCNA_01379 at 1494.430 kb on + strand, within CCNA_01379 at 1494.430 kb on + strand, within CCNA_01379 at 1494.435 kb on + strand, within CCNA_01379 at 1494.438 kb on - strand, within CCNA_01379 at 1494.448 kb on - strand, within CCNA_01379 at 1494.461 kb on + strand, within CCNA_01379 at 1494.528 kb on - strand, within CCNA_01379 at 1494.699 kb on + strand at 1494.717 kb on - strand at 1494.765 kb on + strand at 1495.348 kb on + strand at 1495.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,492,312 - -0.2 1,492,324 + +0.0 1,492,327 - -1.5 1,492,334 + +0.1 1,492,375 + +0.1 1,492,375 + -0.6 1,492,388 + -0.7 1,492,494 + -0.3 1,492,494 + +0.4 1,492,495 + -0.6 1,492,495 + -1.2 1,492,495 + +0.9 1,492,495 + -0.4 1,492,495 + -1.3 1,492,495 + -0.3 1,492,495 + -1.2 1,492,495 + -0.2 1,492,502 - -1.2 1,492,502 - -0.0 1,492,502 - -0.4 1,492,502 - +1.0 1,492,503 - -1.0 1,492,503 - -1.1 1,492,503 - -1.5 1,492,503 - -1.0 1,492,503 - -1.0 1,492,503 - -0.6 1,492,513 + -0.3 1,492,521 - -1.7 1,492,521 - -0.6 1,492,569 - -1.0 1,492,861 + CCNA_01378 0.57 -0.0 1,493,100 + +0.9 1,493,209 + +0.4 1,493,246 - -0.5 1,493,384 + CCNA_01379 0.10 -0.2 1,493,479 - CCNA_01379 0.17 -0.9 1,493,598 + CCNA_01379 0.25 -0.1 1,493,643 + CCNA_01379 0.28 +0.3 1,493,643 + CCNA_01379 0.28 -0.2 1,493,648 + CCNA_01379 0.29 +0.9 1,493,651 - CCNA_01379 0.29 -0.7 1,493,653 + CCNA_01379 0.29 +0.6 1,493,658 + CCNA_01379 0.29 -0.1 1,493,658 + CCNA_01379 0.29 -0.5 1,493,661 - CCNA_01379 0.30 +0.0 1,493,663 + CCNA_01379 0.30 +1.1 1,493,820 + CCNA_01379 0.40 -0.4 1,493,825 + CCNA_01379 0.41 -0.1 1,494,005 + CCNA_01379 0.53 -1.0 1,494,066 + CCNA_01379 0.57 +0.2 1,494,189 + CCNA_01379 0.66 +1.6 1,494,234 + CCNA_01379 0.69 +0.9 1,494,344 + CCNA_01379 0.77 +0.8 1,494,344 + CCNA_01379 0.77 -0.1 1,494,352 - CCNA_01379 0.77 +0.2 1,494,408 + CCNA_01379 0.81 +0.6 1,494,430 + CCNA_01379 0.83 +0.7 1,494,430 + CCNA_01379 0.83 -0.0 1,494,435 + CCNA_01379 0.83 +1.3 1,494,438 - CCNA_01379 0.83 -0.5 1,494,448 - CCNA_01379 0.84 +1.8 1,494,461 + CCNA_01379 0.85 -0.5 1,494,528 - CCNA_01379 0.89 -0.8 1,494,699 + +0.1 1,494,717 - -0.7 1,494,765 + -0.4 1,495,348 + +1.1 1,495,410 - -0.7
Or see this region's nucleotide sequence