Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01141

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01140 and CCNA_01141 are separated by 263 nucleotidesCCNA_01141 and CCNA_01142 are separated by 686 nucleotides CCNA_01140: CCNA_01140 - PAS-containing EAL phosphodiesterase, at 1,243,292 to 1,244,899 _01140 CCNA_01141: CCNA_01141 - RecA protein, at 1,245,163 to 1,246,233 _01141 CCNA_01142: CCNA_01142 - hypothetical protein, at 1,246,920 to 1,247,396 _01142 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -2 -1 0 1 2at 1244.163 kb on + strand, within CCNA_01140at 1244.169 kb on - strand, within CCNA_01140at 1244.290 kb on - strand, within CCNA_01140at 1244.317 kb on - strand, within CCNA_01140at 1244.342 kb on + strand, within CCNA_01140at 1244.342 kb on + strand, within CCNA_01140at 1244.350 kb on + strand, within CCNA_01140at 1244.350 kb on - strand, within CCNA_01140at 1244.406 kb on - strand, within CCNA_01140at 1244.406 kb on - strand, within CCNA_01140at 1244.408 kb on - strand, within CCNA_01140at 1244.445 kb on + strand, within CCNA_01140at 1244.445 kb on + strand, within CCNA_01140at 1244.453 kb on - strand, within CCNA_01140at 1244.455 kb on + strand, within CCNA_01140at 1244.484 kb on + strand, within CCNA_01140at 1244.492 kb on - strand, within CCNA_01140at 1244.492 kb on - strand, within CCNA_01140at 1244.492 kb on - strand, within CCNA_01140at 1244.495 kb on + strand, within CCNA_01140at 1244.500 kb on + strand, within CCNA_01140at 1244.503 kb on - strand, within CCNA_01140at 1244.528 kb on - strand, within CCNA_01140at 1244.549 kb on - strand, within CCNA_01140at 1244.609 kb on - strand, within CCNA_01140at 1244.628 kb on + strand, within CCNA_01140at 1244.628 kb on - strand, within CCNA_01140at 1244.665 kb on + strand, within CCNA_01140at 1244.665 kb on + strand, within CCNA_01140at 1244.665 kb on + strand, within CCNA_01140at 1244.665 kb on + strand, within CCNA_01140at 1244.717 kb on - strand, within CCNA_01140at 1244.748 kb on + strandat 1244.748 kb on + strandat 1244.748 kb on + strandat 1244.748 kb on + strandat 1244.748 kb on + strandat 1244.748 kb on + strandat 1244.748 kb on + strandat 1244.756 kb on - strandat 1244.756 kb on - strandat 1244.756 kb on - strandat 1244.756 kb on - strandat 1244.756 kb on - strandat 1244.767 kb on + strandat 1244.784 kb on - strandat 1244.792 kb on + strandat 1244.848 kb on + strandat 1244.861 kb on - strandat 1244.866 kb on - strandat 1244.869 kb on + strandat 1244.971 kb on + strandat 1245.006 kb on - strandat 1245.199 kb on + strandat 1245.206 kb on + strandat 1245.272 kb on - strand, within CCNA_01141at 1245.514 kb on - strand, within CCNA_01141at 1246.208 kb on + strandat 1246.208 kb on + strandat 1246.208 kb on + strandat 1246.208 kb on + strandat 1246.227 kb on - strandat 1246.235 kb on - strandat 1246.236 kb on - strandat 1246.242 kb on + strandat 1246.258 kb on + strandat 1246.259 kb on + strandat 1246.266 kb on - strandat 1246.345 kb on - strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.406 kb on + strandat 1246.406 kb on + strandat 1246.406 kb on + strandat 1246.406 kb on + strandat 1246.463 kb on + strandat 1246.517 kb on - strandat 1246.624 kb on - strandat 1246.632 kb on + strandat 1246.634 kb on + strandat 1246.634 kb on + strandat 1246.634 kb on + strandat 1246.634 kb on + strandat 1246.642 kb on - strandat 1246.642 kb on - strandat 1246.642 kb on - strandat 1246.642 kb on - strandat 1246.644 kb on + strandat 1246.651 kb on + strandat 1246.652 kb on - strandat 1246.690 kb on - strandat 1246.706 kb on + strandat 1246.715 kb on - strandat 1246.728 kb on + strandat 1246.728 kb on + strandat 1246.743 kb on + strandat 1246.743 kb on + strandat 1246.751 kb on + strandat 1246.759 kb on - strandat 1246.835 kb on - strandat 1246.842 kb on + strandat 1246.852 kb on - strandat 1246.909 kb on - strandat 1246.911 kb on + strandat 1246.940 kb on + strandat 1246.948 kb on - strandat 1246.971 kb on + strand, within CCNA_01142at 1246.971 kb on + strand, within CCNA_01142at 1246.979 kb on - strand, within CCNA_01142at 1246.987 kb on - strand, within CCNA_01142at 1247.039 kb on + strand, within CCNA_01142at 1247.150 kb on + strand, within CCNA_01142at 1247.150 kb on + strand, within CCNA_01142at 1247.158 kb on - strand, within CCNA_01142at 1247.216 kb on + strand, within CCNA_01142

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,244,163 + CCNA_01140 0.54 -0.2
1,244,169 - CCNA_01140 0.55 +0.0
1,244,290 - CCNA_01140 0.62 +0.3
1,244,317 - CCNA_01140 0.64 -0.2
1,244,342 + CCNA_01140 0.65 +0.5
1,244,342 + CCNA_01140 0.65 +0.3
1,244,350 + CCNA_01140 0.66 +1.1
1,244,350 - CCNA_01140 0.66 +0.2
1,244,406 - CCNA_01140 0.69 +0.2
1,244,406 - CCNA_01140 0.69 -0.0
1,244,408 - CCNA_01140 0.69 +0.0
1,244,445 + CCNA_01140 0.72 -0.7
1,244,445 + CCNA_01140 0.72 -0.9
1,244,453 - CCNA_01140 0.72 +0.6
1,244,455 + CCNA_01140 0.72 +0.5
1,244,484 + CCNA_01140 0.74 -0.2
1,244,492 - CCNA_01140 0.75 +0.2
1,244,492 - CCNA_01140 0.75 +2.1
1,244,492 - CCNA_01140 0.75 -0.0
1,244,495 + CCNA_01140 0.75 +0.5
1,244,500 + CCNA_01140 0.75 -0.2
1,244,503 - CCNA_01140 0.75 +0.3
1,244,528 - CCNA_01140 0.77 +0.2
1,244,549 - CCNA_01140 0.78 +0.2
1,244,609 - CCNA_01140 0.82 +0.1
1,244,628 + CCNA_01140 0.83 -0.2
1,244,628 - CCNA_01140 0.83 -0.0
1,244,665 + CCNA_01140 0.85 -1.5
1,244,665 + CCNA_01140 0.85 +0.1
1,244,665 + CCNA_01140 0.85 -0.9
1,244,665 + CCNA_01140 0.85 -0.8
1,244,717 - CCNA_01140 0.89 +0.0
1,244,748 + +0.6
1,244,748 + -1.0
1,244,748 + +1.0
1,244,748 + +0.2
1,244,748 + -0.9
1,244,748 + +1.8
1,244,748 + +0.7
1,244,756 - +0.2
1,244,756 - -1.0
1,244,756 - +0.4
1,244,756 - -0.9
1,244,756 - +1.0
1,244,767 + -0.2
1,244,784 - +0.2
1,244,792 + +0.6
1,244,848 + -0.0
1,244,861 - +0.9
1,244,866 - +0.2
1,244,869 + -0.1
1,244,971 + -0.5
1,245,006 - -1.9
1,245,199 + +0.8
1,245,206 + +0.8
1,245,272 - CCNA_01141 0.10 +0.2
1,245,514 - CCNA_01141 0.33 -1.9
1,246,208 + +0.6
1,246,208 + -0.1
1,246,208 + +0.4
1,246,208 + +1.3
1,246,227 - +0.9
1,246,235 - -0.3
1,246,236 - +0.4
1,246,242 + +0.0
1,246,258 + +0.1
1,246,259 + +0.6
1,246,266 - -0.5
1,246,345 - -1.2
1,246,387 + -0.7
1,246,387 + -0.6
1,246,387 + -0.1
1,246,387 + -0.1
1,246,387 + -0.1
1,246,387 + -0.5
1,246,387 + -0.2
1,246,387 + +0.3
1,246,387 + +0.1
1,246,387 + -0.4
1,246,387 + +0.1
1,246,395 - +0.2
1,246,395 - +0.4
1,246,395 - -1.2
1,246,395 - -0.0
1,246,395 - -0.0
1,246,395 - -1.0
1,246,406 + +0.7
1,246,406 + +1.1
1,246,406 + -0.4
1,246,406 + +0.9
1,246,463 + -0.2
1,246,517 - -1.1
1,246,624 - +0.1
1,246,632 + +0.8
1,246,634 + -1.0
1,246,634 + +0.3
1,246,634 + -0.1
1,246,634 + +1.0
1,246,642 - -0.6
1,246,642 - +0.8
1,246,642 - +0.3
1,246,642 - -0.4
1,246,644 + +0.7
1,246,651 + +0.4
1,246,652 - -1.9
1,246,690 - +0.2
1,246,706 + +0.9
1,246,715 - -0.2
1,246,728 + -0.6
1,246,728 + +0.9
1,246,743 + +0.1
1,246,743 + -1.0
1,246,751 + +0.2
1,246,759 - -1.7
1,246,835 - -0.2
1,246,842 + -0.1
1,246,852 - +1.1
1,246,909 - -0.3
1,246,911 + +0.6
1,246,940 + -0.6
1,246,948 - +0.1
1,246,971 + CCNA_01142 0.11 -0.2
1,246,971 + CCNA_01142 0.11 -0.8
1,246,979 - CCNA_01142 0.12 -1.0
1,246,987 - CCNA_01142 0.14 +0.9
1,247,039 + CCNA_01142 0.25 +0.1
1,247,150 + CCNA_01142 0.48 +1.6
1,247,150 + CCNA_01142 0.48 -0.9
1,247,158 - CCNA_01142 0.50 +0.1
1,247,216 + CCNA_01142 0.62 +0.6

Or see this region's nucleotide sequence