Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01140 and CCNA_01141 are separated by 263 nucleotides CCNA_01141 and CCNA_01142 are separated by 686 nucleotides
CCNA_01140: CCNA_01140 - PAS-containing EAL phosphodiesterase, at 1,243,292 to 1,244,899
_01140
CCNA_01141: CCNA_01141 - RecA protein, at 1,245,163 to 1,246,233
_01141
CCNA_01142: CCNA_01142 - hypothetical protein, at 1,246,920 to 1,247,396
_01142
Position (kb)
1245
1246
1247 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1244.163 kb on + strand, within CCNA_01140 at 1244.169 kb on - strand, within CCNA_01140 at 1244.290 kb on - strand, within CCNA_01140 at 1244.317 kb on - strand, within CCNA_01140 at 1244.342 kb on + strand, within CCNA_01140 at 1244.342 kb on + strand, within CCNA_01140 at 1244.350 kb on + strand, within CCNA_01140 at 1244.350 kb on - strand, within CCNA_01140 at 1244.406 kb on - strand, within CCNA_01140 at 1244.406 kb on - strand, within CCNA_01140 at 1244.408 kb on - strand, within CCNA_01140 at 1244.445 kb on + strand, within CCNA_01140 at 1244.445 kb on + strand, within CCNA_01140 at 1244.453 kb on - strand, within CCNA_01140 at 1244.455 kb on + strand, within CCNA_01140 at 1244.484 kb on + strand, within CCNA_01140 at 1244.492 kb on - strand, within CCNA_01140 at 1244.492 kb on - strand, within CCNA_01140 at 1244.492 kb on - strand, within CCNA_01140 at 1244.495 kb on + strand, within CCNA_01140 at 1244.500 kb on + strand, within CCNA_01140 at 1244.503 kb on - strand, within CCNA_01140 at 1244.528 kb on - strand, within CCNA_01140 at 1244.549 kb on - strand, within CCNA_01140 at 1244.609 kb on - strand, within CCNA_01140 at 1244.628 kb on + strand, within CCNA_01140 at 1244.628 kb on - strand, within CCNA_01140 at 1244.665 kb on + strand, within CCNA_01140 at 1244.665 kb on + strand, within CCNA_01140 at 1244.665 kb on + strand, within CCNA_01140 at 1244.665 kb on + strand, within CCNA_01140 at 1244.717 kb on - strand, within CCNA_01140 at 1244.748 kb on + strand at 1244.748 kb on + strand at 1244.748 kb on + strand at 1244.748 kb on + strand at 1244.748 kb on + strand at 1244.748 kb on + strand at 1244.748 kb on + strand at 1244.756 kb on - strand at 1244.756 kb on - strand at 1244.756 kb on - strand at 1244.756 kb on - strand at 1244.756 kb on - strand at 1244.767 kb on + strand at 1244.784 kb on - strand at 1244.792 kb on + strand at 1244.848 kb on + strand at 1244.861 kb on - strand at 1244.866 kb on - strand at 1244.869 kb on + strand at 1244.971 kb on + strand at 1245.006 kb on - strand at 1245.199 kb on + strand at 1245.206 kb on + strand at 1245.272 kb on - strand, within CCNA_01141 at 1245.514 kb on - strand, within CCNA_01141 at 1246.208 kb on + strand at 1246.208 kb on + strand at 1246.208 kb on + strand at 1246.208 kb on + strand at 1246.227 kb on - strand at 1246.235 kb on - strand at 1246.236 kb on - strand at 1246.242 kb on + strand at 1246.258 kb on + strand at 1246.259 kb on + strand at 1246.266 kb on - strand at 1246.345 kb on - strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.406 kb on + strand at 1246.406 kb on + strand at 1246.406 kb on + strand at 1246.406 kb on + strand at 1246.463 kb on + strand at 1246.517 kb on - strand at 1246.624 kb on - strand at 1246.632 kb on + strand at 1246.634 kb on + strand at 1246.634 kb on + strand at 1246.634 kb on + strand at 1246.634 kb on + strand at 1246.642 kb on - strand at 1246.642 kb on - strand at 1246.642 kb on - strand at 1246.642 kb on - strand at 1246.644 kb on + strand at 1246.651 kb on + strand at 1246.652 kb on - strand at 1246.690 kb on - strand at 1246.706 kb on + strand at 1246.715 kb on - strand at 1246.728 kb on + strand at 1246.728 kb on + strand at 1246.743 kb on + strand at 1246.743 kb on + strand at 1246.751 kb on + strand at 1246.759 kb on - strand at 1246.835 kb on - strand at 1246.842 kb on + strand at 1246.852 kb on - strand at 1246.909 kb on - strand at 1246.911 kb on + strand at 1246.940 kb on + strand at 1246.948 kb on - strand at 1246.971 kb on + strand, within CCNA_01142 at 1246.971 kb on + strand, within CCNA_01142 at 1246.979 kb on - strand, within CCNA_01142 at 1246.987 kb on - strand, within CCNA_01142 at 1247.039 kb on + strand, within CCNA_01142 at 1247.150 kb on + strand, within CCNA_01142 at 1247.150 kb on + strand, within CCNA_01142 at 1247.158 kb on - strand, within CCNA_01142 at 1247.216 kb on + strand, within CCNA_01142
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 1,244,163 + CCNA_01140 0.54 -0.2 1,244,169 - CCNA_01140 0.55 +0.0 1,244,290 - CCNA_01140 0.62 +0.3 1,244,317 - CCNA_01140 0.64 -0.2 1,244,342 + CCNA_01140 0.65 +0.5 1,244,342 + CCNA_01140 0.65 +0.3 1,244,350 + CCNA_01140 0.66 +1.1 1,244,350 - CCNA_01140 0.66 +0.2 1,244,406 - CCNA_01140 0.69 +0.2 1,244,406 - CCNA_01140 0.69 -0.0 1,244,408 - CCNA_01140 0.69 +0.0 1,244,445 + CCNA_01140 0.72 -0.7 1,244,445 + CCNA_01140 0.72 -0.9 1,244,453 - CCNA_01140 0.72 +0.6 1,244,455 + CCNA_01140 0.72 +0.5 1,244,484 + CCNA_01140 0.74 -0.2 1,244,492 - CCNA_01140 0.75 +0.2 1,244,492 - CCNA_01140 0.75 +2.1 1,244,492 - CCNA_01140 0.75 -0.0 1,244,495 + CCNA_01140 0.75 +0.5 1,244,500 + CCNA_01140 0.75 -0.2 1,244,503 - CCNA_01140 0.75 +0.3 1,244,528 - CCNA_01140 0.77 +0.2 1,244,549 - CCNA_01140 0.78 +0.2 1,244,609 - CCNA_01140 0.82 +0.1 1,244,628 + CCNA_01140 0.83 -0.2 1,244,628 - CCNA_01140 0.83 -0.0 1,244,665 + CCNA_01140 0.85 -1.5 1,244,665 + CCNA_01140 0.85 +0.1 1,244,665 + CCNA_01140 0.85 -0.9 1,244,665 + CCNA_01140 0.85 -0.8 1,244,717 - CCNA_01140 0.89 +0.0 1,244,748 + +0.6 1,244,748 + -1.0 1,244,748 + +1.0 1,244,748 + +0.2 1,244,748 + -0.9 1,244,748 + +1.8 1,244,748 + +0.7 1,244,756 - +0.2 1,244,756 - -1.0 1,244,756 - +0.4 1,244,756 - -0.9 1,244,756 - +1.0 1,244,767 + -0.2 1,244,784 - +0.2 1,244,792 + +0.6 1,244,848 + -0.0 1,244,861 - +0.9 1,244,866 - +0.2 1,244,869 + -0.1 1,244,971 + -0.5 1,245,006 - -1.9 1,245,199 + +0.8 1,245,206 + +0.8 1,245,272 - CCNA_01141 0.10 +0.2 1,245,514 - CCNA_01141 0.33 -1.9 1,246,208 + +0.6 1,246,208 + -0.1 1,246,208 + +0.4 1,246,208 + +1.3 1,246,227 - +0.9 1,246,235 - -0.3 1,246,236 - +0.4 1,246,242 + +0.0 1,246,258 + +0.1 1,246,259 + +0.6 1,246,266 - -0.5 1,246,345 - -1.2 1,246,387 + -0.7 1,246,387 + -0.6 1,246,387 + -0.1 1,246,387 + -0.1 1,246,387 + -0.1 1,246,387 + -0.5 1,246,387 + -0.2 1,246,387 + +0.3 1,246,387 + +0.1 1,246,387 + -0.4 1,246,387 + +0.1 1,246,395 - +0.2 1,246,395 - +0.4 1,246,395 - -1.2 1,246,395 - -0.0 1,246,395 - -0.0 1,246,395 - -1.0 1,246,406 + +0.7 1,246,406 + +1.1 1,246,406 + -0.4 1,246,406 + +0.9 1,246,463 + -0.2 1,246,517 - -1.1 1,246,624 - +0.1 1,246,632 + +0.8 1,246,634 + -1.0 1,246,634 + +0.3 1,246,634 + -0.1 1,246,634 + +1.0 1,246,642 - -0.6 1,246,642 - +0.8 1,246,642 - +0.3 1,246,642 - -0.4 1,246,644 + +0.7 1,246,651 + +0.4 1,246,652 - -1.9 1,246,690 - +0.2 1,246,706 + +0.9 1,246,715 - -0.2 1,246,728 + -0.6 1,246,728 + +0.9 1,246,743 + +0.1 1,246,743 + -1.0 1,246,751 + +0.2 1,246,759 - -1.7 1,246,835 - -0.2 1,246,842 + -0.1 1,246,852 - +1.1 1,246,909 - -0.3 1,246,911 + +0.6 1,246,940 + -0.6 1,246,948 - +0.1 1,246,971 + CCNA_01142 0.11 -0.2 1,246,971 + CCNA_01142 0.11 -0.8 1,246,979 - CCNA_01142 0.12 -1.0 1,246,987 - CCNA_01142 0.14 +0.9 1,247,039 + CCNA_01142 0.25 +0.1 1,247,150 + CCNA_01142 0.48 +1.6 1,247,150 + CCNA_01142 0.48 -0.9 1,247,158 - CCNA_01142 0.50 +0.1 1,247,216 + CCNA_01142 0.62 +0.6
Or see this region's nucleotide sequence