Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01067

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01066 and CCNA_01067 are separated by 56 nucleotidesCCNA_01067 and CCNA_01068 are separated by 105 nucleotides CCNA_01066: CCNA_01066 - glycosyltransferase, at 1,170,058 to 1,171,095 _01066 CCNA_01067: CCNA_01067 - type I secretion outer membrane protein RsaFa, at 1,171,152 to 1,172,735 _01067 CCNA_01068: CCNA_01068 - glycosyltransferase, at 1,172,841 to 1,174,130 _01068 Position (kb) 1171 1172 1173Strain fitness (log2 ratio) -2 -1 0 1 2at 1170.181 kb on + strand, within CCNA_01066at 1170.189 kb on - strand, within CCNA_01066at 1170.228 kb on + strand, within CCNA_01066at 1170.341 kb on + strand, within CCNA_01066at 1170.341 kb on + strand, within CCNA_01066at 1170.349 kb on - strand, within CCNA_01066at 1170.349 kb on - strand, within CCNA_01066at 1170.351 kb on + strand, within CCNA_01066at 1170.361 kb on + strand, within CCNA_01066at 1170.369 kb on - strand, within CCNA_01066at 1170.369 kb on - strand, within CCNA_01066at 1170.369 kb on - strand, within CCNA_01066at 1170.369 kb on - strand, within CCNA_01066at 1170.369 kb on - strand, within CCNA_01066at 1170.378 kb on - strand, within CCNA_01066at 1170.419 kb on + strand, within CCNA_01066at 1170.557 kb on - strand, within CCNA_01066at 1170.610 kb on + strand, within CCNA_01066at 1170.639 kb on - strand, within CCNA_01066at 1170.698 kb on - strand, within CCNA_01066at 1170.751 kb on - strand, within CCNA_01066at 1170.769 kb on - strand, within CCNA_01066at 1170.802 kb on + strand, within CCNA_01066at 1170.802 kb on + strand, within CCNA_01066at 1170.807 kb on + strand, within CCNA_01066at 1170.810 kb on - strand, within CCNA_01066at 1170.810 kb on - strand, within CCNA_01066at 1170.810 kb on - strand, within CCNA_01066at 1170.810 kb on - strand, within CCNA_01066at 1170.810 kb on - strand, within CCNA_01066at 1170.856 kb on + strand, within CCNA_01066at 1170.864 kb on - strand, within CCNA_01066at 1170.912 kb on + strand, within CCNA_01066at 1170.920 kb on - strand, within CCNA_01066at 1170.920 kb on - strand, within CCNA_01066at 1170.963 kb on + strand, within CCNA_01066at 1171.037 kb on + strandat 1171.044 kb on - strandat 1171.045 kb on - strandat 1171.121 kb on + strandat 1171.163 kb on + strandat 1171.241 kb on - strandat 1171.251 kb on + strandat 1171.252 kb on - strandat 1171.258 kb on - strandat 1171.273 kb on - strandat 1171.283 kb on + strandat 1171.334 kb on + strand, within CCNA_01067at 1171.342 kb on - strand, within CCNA_01067at 1171.400 kb on - strand, within CCNA_01067at 1171.400 kb on - strand, within CCNA_01067at 1171.402 kb on + strand, within CCNA_01067at 1171.411 kb on - strand, within CCNA_01067at 1171.411 kb on - strand, within CCNA_01067at 1171.411 kb on - strand, within CCNA_01067at 1171.411 kb on - strand, within CCNA_01067at 1171.450 kb on + strand, within CCNA_01067at 1171.456 kb on - strand, within CCNA_01067at 1171.462 kb on + strand, within CCNA_01067at 1171.468 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.526 kb on + strand, within CCNA_01067at 1171.534 kb on - strand, within CCNA_01067at 1171.534 kb on - strand, within CCNA_01067at 1171.534 kb on - strand, within CCNA_01067at 1171.534 kb on - strand, within CCNA_01067at 1171.534 kb on - strand, within CCNA_01067at 1171.534 kb on - strand, within CCNA_01067at 1171.561 kb on + strand, within CCNA_01067at 1171.680 kb on + strand, within CCNA_01067at 1171.688 kb on - strand, within CCNA_01067at 1171.692 kb on - strand, within CCNA_01067at 1171.698 kb on - strand, within CCNA_01067at 1171.722 kb on - strand, within CCNA_01067at 1171.724 kb on + strand, within CCNA_01067at 1171.732 kb on - strand, within CCNA_01067at 1171.745 kb on + strand, within CCNA_01067at 1171.758 kb on - strand, within CCNA_01067at 1171.797 kb on - strand, within CCNA_01067at 1171.862 kb on + strand, within CCNA_01067at 1171.862 kb on + strand, within CCNA_01067at 1171.862 kb on + strand, within CCNA_01067at 1171.862 kb on + strand, within CCNA_01067at 1171.870 kb on - strand, within CCNA_01067at 1171.934 kb on - strand, within CCNA_01067at 1171.972 kb on - strand, within CCNA_01067at 1171.982 kb on + strand, within CCNA_01067at 1171.990 kb on - strand, within CCNA_01067at 1172.004 kb on + strand, within CCNA_01067at 1172.016 kb on + strand, within CCNA_01067at 1172.070 kb on + strand, within CCNA_01067at 1172.092 kb on - strand, within CCNA_01067at 1172.096 kb on + strand, within CCNA_01067at 1172.207 kb on + strand, within CCNA_01067at 1172.216 kb on - strand, within CCNA_01067at 1172.219 kb on + strand, within CCNA_01067at 1172.284 kb on + strand, within CCNA_01067at 1172.284 kb on + strand, within CCNA_01067at 1172.292 kb on - strand, within CCNA_01067at 1172.445 kb on - strand, within CCNA_01067at 1172.471 kb on + strand, within CCNA_01067at 1172.479 kb on - strand, within CCNA_01067at 1172.500 kb on - strand, within CCNA_01067at 1172.502 kb on + strand, within CCNA_01067at 1172.538 kb on + strand, within CCNA_01067at 1172.711 kb on + strandat 1172.711 kb on + strandat 1172.719 kb on - strandat 1172.719 kb on - strandat 1172.740 kb on - strandat 1172.763 kb on - strandat 1172.770 kb on + strandat 1172.770 kb on + strandat 1172.778 kb on - strandat 1172.778 kb on - strandat 1172.778 kb on - strandat 1172.778 kb on - strandat 1172.794 kb on + strandat 1172.827 kb on + strandat 1172.870 kb on + strandat 1172.985 kb on + strand, within CCNA_01068at 1172.985 kb on + strand, within CCNA_01068at 1172.985 kb on + strand, within CCNA_01068at 1172.985 kb on + strand, within CCNA_01068at 1172.985 kb on + strand, within CCNA_01068at 1172.990 kb on + strand, within CCNA_01068at 1173.090 kb on + strand, within CCNA_01068at 1173.108 kb on + strand, within CCNA_01068at 1173.167 kb on + strand, within CCNA_01068at 1173.186 kb on - strand, within CCNA_01068at 1173.188 kb on + strand, within CCNA_01068at 1173.188 kb on + strand, within CCNA_01068at 1173.217 kb on + strand, within CCNA_01068at 1173.217 kb on + strand, within CCNA_01068at 1173.217 kb on + strand, within CCNA_01068at 1173.217 kb on + strand, within CCNA_01068at 1173.217 kb on + strand, within CCNA_01068at 1173.225 kb on - strand, within CCNA_01068at 1173.225 kb on - strand, within CCNA_01068at 1173.244 kb on - strand, within CCNA_01068at 1173.304 kb on + strand, within CCNA_01068at 1173.304 kb on + strand, within CCNA_01068at 1173.304 kb on + strand, within CCNA_01068at 1173.338 kb on + strand, within CCNA_01068at 1173.338 kb on + strand, within CCNA_01068at 1173.346 kb on - strand, within CCNA_01068at 1173.371 kb on + strand, within CCNA_01068at 1173.379 kb on - strand, within CCNA_01068at 1173.464 kb on + strand, within CCNA_01068at 1173.464 kb on + strand, within CCNA_01068at 1173.464 kb on + strand, within CCNA_01068at 1173.497 kb on + strand, within CCNA_01068at 1173.505 kb on - strand, within CCNA_01068at 1173.523 kb on + strand, within CCNA_01068at 1173.523 kb on + strand, within CCNA_01068at 1173.524 kb on + strand, within CCNA_01068at 1173.530 kb on + strand, within CCNA_01068at 1173.530 kb on + strand, within CCNA_01068at 1173.576 kb on + strand, within CCNA_01068at 1173.576 kb on + strand, within CCNA_01068at 1173.594 kb on - strand, within CCNA_01068at 1173.613 kb on - strand, within CCNA_01068at 1173.727 kb on - strand, within CCNA_01068

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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1,170,181 + CCNA_01066 0.12 +0.6
1,170,189 - CCNA_01066 0.13 -0.3
1,170,228 + CCNA_01066 0.16 +1.3
1,170,341 + CCNA_01066 0.27 +0.4
1,170,341 + CCNA_01066 0.27 +0.1
1,170,349 - CCNA_01066 0.28 -1.0
1,170,349 - CCNA_01066 0.28 -0.0
1,170,351 + CCNA_01066 0.28 -0.7
1,170,361 + CCNA_01066 0.29 +0.7
1,170,369 - CCNA_01066 0.30 +0.6
1,170,369 - CCNA_01066 0.30 +1.4
1,170,369 - CCNA_01066 0.30 -2.3
1,170,369 - CCNA_01066 0.30 -0.1
1,170,369 - CCNA_01066 0.30 -1.4
1,170,378 - CCNA_01066 0.31 +0.1
1,170,419 + CCNA_01066 0.35 +0.2
1,170,557 - CCNA_01066 0.48 -1.9
1,170,610 + CCNA_01066 0.53 +0.5
1,170,639 - CCNA_01066 0.56 +0.7
1,170,698 - CCNA_01066 0.62 -0.8
1,170,751 - CCNA_01066 0.67 -1.3
1,170,769 - CCNA_01066 0.68 -0.6
1,170,802 + CCNA_01066 0.72 -1.8
1,170,802 + CCNA_01066 0.72 -0.2
1,170,807 + CCNA_01066 0.72 -0.4
1,170,810 - CCNA_01066 0.72 -1.1
1,170,810 - CCNA_01066 0.72 -0.3
1,170,810 - CCNA_01066 0.72 -0.6
1,170,810 - CCNA_01066 0.72 -0.5
1,170,810 - CCNA_01066 0.72 +0.9
1,170,856 + CCNA_01066 0.77 +0.0
1,170,864 - CCNA_01066 0.78 +0.7
1,170,912 + CCNA_01066 0.82 +0.0
1,170,920 - CCNA_01066 0.83 -1.4
1,170,920 - CCNA_01066 0.83 -1.6
1,170,963 + CCNA_01066 0.87 -0.7
1,171,037 + -0.5
1,171,044 - +0.1
1,171,045 - +0.1
1,171,121 + +0.0
1,171,163 + -1.6
1,171,241 - +0.4
1,171,251 + +1.6
1,171,252 - +0.5
1,171,258 - -0.9
1,171,273 - -1.0
1,171,283 + +0.1
1,171,334 + CCNA_01067 0.11 -0.1
1,171,342 - CCNA_01067 0.12 +0.3
1,171,400 - CCNA_01067 0.16 -0.7
1,171,400 - CCNA_01067 0.16 +0.3
1,171,402 + CCNA_01067 0.16 +0.8
1,171,411 - CCNA_01067 0.16 +0.1
1,171,411 - CCNA_01067 0.16 +0.9
1,171,411 - CCNA_01067 0.16 +0.7
1,171,411 - CCNA_01067 0.16 +0.4
1,171,450 + CCNA_01067 0.19 +0.2
1,171,456 - CCNA_01067 0.19 -0.4
1,171,462 + CCNA_01067 0.20 +0.8
1,171,468 + CCNA_01067 0.20 +0.0
1,171,526 + CCNA_01067 0.24 +0.3
1,171,526 + CCNA_01067 0.24 -0.1
1,171,526 + CCNA_01067 0.24 +0.8
1,171,526 + CCNA_01067 0.24 +0.9
1,171,526 + CCNA_01067 0.24 +0.7
1,171,526 + CCNA_01067 0.24 +0.7
1,171,526 + CCNA_01067 0.24 +2.5
1,171,526 + CCNA_01067 0.24 +1.3
1,171,526 + CCNA_01067 0.24 +0.0
1,171,526 + CCNA_01067 0.24 +0.4
1,171,526 + CCNA_01067 0.24 +0.6
1,171,526 + CCNA_01067 0.24 +0.8
1,171,526 + CCNA_01067 0.24 -0.1
1,171,526 + CCNA_01067 0.24 -0.2
1,171,526 + CCNA_01067 0.24 +0.3
1,171,534 - CCNA_01067 0.24 -1.0
1,171,534 - CCNA_01067 0.24 -1.1
1,171,534 - CCNA_01067 0.24 +0.2
1,171,534 - CCNA_01067 0.24 -1.3
1,171,534 - CCNA_01067 0.24 -2.3
1,171,534 - CCNA_01067 0.24 +0.2
1,171,561 + CCNA_01067 0.26 -0.1
1,171,680 + CCNA_01067 0.33 +0.1
1,171,688 - CCNA_01067 0.34 +1.2
1,171,692 - CCNA_01067 0.34 -0.7
1,171,698 - CCNA_01067 0.34 +0.6
1,171,722 - CCNA_01067 0.36 +1.7
1,171,724 + CCNA_01067 0.36 +0.8
1,171,732 - CCNA_01067 0.37 +0.4
1,171,745 + CCNA_01067 0.37 +0.7
1,171,758 - CCNA_01067 0.38 -1.4
1,171,797 - CCNA_01067 0.41 -1.3
1,171,862 + CCNA_01067 0.45 -0.7
1,171,862 + CCNA_01067 0.45 +0.4
1,171,862 + CCNA_01067 0.45 -0.2
1,171,862 + CCNA_01067 0.45 +0.0
1,171,870 - CCNA_01067 0.45 +0.1
1,171,934 - CCNA_01067 0.49 +0.3
1,171,972 - CCNA_01067 0.52 -0.7
1,171,982 + CCNA_01067 0.52 -0.3
1,171,990 - CCNA_01067 0.53 -1.0
1,172,004 + CCNA_01067 0.54 +0.2
1,172,016 + CCNA_01067 0.55 +0.3
1,172,070 + CCNA_01067 0.58 +0.0
1,172,092 - CCNA_01067 0.59 -0.7
1,172,096 + CCNA_01067 0.60 +0.7
1,172,207 + CCNA_01067 0.67 +0.2
1,172,216 - CCNA_01067 0.67 +0.2
1,172,219 + CCNA_01067 0.67 +0.5
1,172,284 + CCNA_01067 0.71 +0.1
1,172,284 + CCNA_01067 0.71 -0.9
1,172,292 - CCNA_01067 0.72 +0.7
1,172,445 - CCNA_01067 0.82 +1.2
1,172,471 + CCNA_01067 0.83 -0.0
1,172,479 - CCNA_01067 0.84 -0.2
1,172,500 - CCNA_01067 0.85 +0.0
1,172,502 + CCNA_01067 0.85 +0.0
1,172,538 + CCNA_01067 0.88 +0.3
1,172,711 + +0.9
1,172,711 + +0.0
1,172,719 - -0.7
1,172,719 - -0.6
1,172,740 - -0.1
1,172,763 - +0.4
1,172,770 + +0.2
1,172,770 + +1.2
1,172,778 - +0.3
1,172,778 - +0.4
1,172,778 - -0.3
1,172,778 - +0.3
1,172,794 + +1.1
1,172,827 + +0.8
1,172,870 + +0.1
1,172,985 + CCNA_01068 0.11 +0.6
1,172,985 + CCNA_01068 0.11 +1.7
1,172,985 + CCNA_01068 0.11 +0.7
1,172,985 + CCNA_01068 0.11 -0.4
1,172,985 + CCNA_01068 0.11 -1.4
1,172,990 + CCNA_01068 0.12 -0.5
1,173,090 + CCNA_01068 0.19 +0.3
1,173,108 + CCNA_01068 0.21 -1.9
1,173,167 + CCNA_01068 0.25 +0.4
1,173,186 - CCNA_01068 0.27 +0.7
1,173,188 + CCNA_01068 0.27 +0.9
1,173,188 + CCNA_01068 0.27 -0.7
1,173,217 + CCNA_01068 0.29 -1.0
1,173,217 + CCNA_01068 0.29 +0.1
1,173,217 + CCNA_01068 0.29 -0.1
1,173,217 + CCNA_01068 0.29 -1.2
1,173,217 + CCNA_01068 0.29 -0.4
1,173,225 - CCNA_01068 0.30 -1.5
1,173,225 - CCNA_01068 0.30 +0.4
1,173,244 - CCNA_01068 0.31 -0.1
1,173,304 + CCNA_01068 0.36 +0.4
1,173,304 + CCNA_01068 0.36 -0.1
1,173,304 + CCNA_01068 0.36 +0.1
1,173,338 + CCNA_01068 0.39 +1.6
1,173,338 + CCNA_01068 0.39 -1.4
1,173,346 - CCNA_01068 0.39 -2.6
1,173,371 + CCNA_01068 0.41 -0.1
1,173,379 - CCNA_01068 0.42 +0.2
1,173,464 + CCNA_01068 0.48 +0.7
1,173,464 + CCNA_01068 0.48 -0.4
1,173,464 + CCNA_01068 0.48 +0.7
1,173,497 + CCNA_01068 0.51 -1.1
1,173,505 - CCNA_01068 0.51 +0.4
1,173,523 + CCNA_01068 0.53 -0.6
1,173,523 + CCNA_01068 0.53 +1.1
1,173,524 + CCNA_01068 0.53 -0.5
1,173,530 + CCNA_01068 0.53 -1.0
1,173,530 + CCNA_01068 0.53 +0.1
1,173,576 + CCNA_01068 0.57 +2.4
1,173,576 + CCNA_01068 0.57 +1.9
1,173,594 - CCNA_01068 0.58 +0.4
1,173,613 - CCNA_01068 0.60 -1.6
1,173,727 - CCNA_01068 0.69 -0.5

Or see this region's nucleotide sequence