Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00907

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00905 and CCNA_00906 are separated by 69 nucleotidesCCNA_00906 and CCNA_00907 overlap by 4 nucleotidesCCNA_00907 and CCNA_00908 overlap by 64 nucleotides CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396 _00905 CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380 _00906 CCNA_00907: CCNA_00907 - hypothetical protein, at 987,377 to 988,105 _00907 CCNA_00908: CCNA_00908 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 988,042 to 989,181 _00908 Position (kb) 987 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 986.380 kb on - strandat 986.391 kb on + strandat 986.399 kb on - strandat 986.399 kb on - strandat 986.419 kb on + strandat 986.426 kb on + strandat 986.427 kb on - strandat 986.464 kb on + strandat 986.471 kb on - strandat 986.488 kb on - strandat 986.527 kb on - strandat 986.542 kb on - strandat 986.561 kb on + strand, within CCNA_00906at 986.570 kb on - strand, within CCNA_00906at 986.570 kb on - strand, within CCNA_00906at 986.601 kb on + strand, within CCNA_00906at 986.601 kb on + strand, within CCNA_00906at 986.609 kb on - strand, within CCNA_00906at 986.610 kb on - strand, within CCNA_00906at 986.674 kb on + strand, within CCNA_00906at 986.697 kb on - strand, within CCNA_00906at 986.769 kb on - strand, within CCNA_00906at 986.823 kb on - strand, within CCNA_00906at 986.832 kb on + strand, within CCNA_00906at 986.899 kb on - strand, within CCNA_00906at 986.905 kb on + strand, within CCNA_00906at 986.976 kb on - strand, within CCNA_00906at 986.980 kb on - strand, within CCNA_00906at 986.980 kb on - strand, within CCNA_00906at 986.980 kb on - strand, within CCNA_00906at 987.001 kb on + strand, within CCNA_00906at 987.009 kb on - strand, within CCNA_00906at 987.009 kb on - strand, within CCNA_00906at 987.022 kb on + strand, within CCNA_00906at 987.022 kb on + strand, within CCNA_00906at 987.047 kb on - strand, within CCNA_00906at 987.074 kb on + strand, within CCNA_00906at 987.075 kb on + strand, within CCNA_00906at 987.082 kb on - strand, within CCNA_00906at 987.087 kb on + strand, within CCNA_00906at 987.087 kb on + strand, within CCNA_00906at 987.118 kb on + strand, within CCNA_00906at 987.130 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.142 kb on + strand, within CCNA_00906at 987.149 kb on + strand, within CCNA_00906at 987.152 kb on - strand, within CCNA_00906at 987.152 kb on - strand, within CCNA_00906at 987.164 kb on + strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.261 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.269 kb on + strand, within CCNA_00906at 987.269 kb on - strand, within CCNA_00906at 987.275 kb on + strand, within CCNA_00906at 987.282 kb on - strand, within CCNA_00906at 987.305 kb on + strandat 987.305 kb on + strandat 987.311 kb on + strandat 987.339 kb on + strandat 987.405 kb on + strandat 987.405 kb on + strandat 987.405 kb on + strandat 987.413 kb on - strandat 987.413 kb on - strandat 987.464 kb on + strand, within CCNA_00907at 987.464 kb on + strand, within CCNA_00907at 987.494 kb on - strand, within CCNA_00907at 987.513 kb on - strand, within CCNA_00907at 987.524 kb on + strand, within CCNA_00907at 987.535 kb on - strand, within CCNA_00907at 987.535 kb on - strand, within CCNA_00907at 987.540 kb on - strand, within CCNA_00907at 987.544 kb on + strand, within CCNA_00907at 987.549 kb on + strand, within CCNA_00907at 987.559 kb on + strand, within CCNA_00907at 987.572 kb on - strand, within CCNA_00907at 987.641 kb on - strand, within CCNA_00907at 987.652 kb on + strand, within CCNA_00907at 987.669 kb on + strand, within CCNA_00907at 987.677 kb on + strand, within CCNA_00907at 987.806 kb on + strand, within CCNA_00907at 987.814 kb on - strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.830 kb on - strand, within CCNA_00907at 987.831 kb on - strand, within CCNA_00907at 987.879 kb on + strand, within CCNA_00907at 987.879 kb on + strand, within CCNA_00907at 987.879 kb on + strand, within CCNA_00907at 987.886 kb on - strand, within CCNA_00907at 987.886 kb on - strand, within CCNA_00907at 987.887 kb on - strand, within CCNA_00907at 987.900 kb on - strand, within CCNA_00907at 987.956 kb on + strand, within CCNA_00907at 987.956 kb on + strand, within CCNA_00907at 987.956 kb on + strand, within CCNA_00907at 987.964 kb on - strand, within CCNA_00907at 987.970 kb on + strand, within CCNA_00907at 988.001 kb on - strand, within CCNA_00907at 988.005 kb on - strand, within CCNA_00907at 988.021 kb on - strand, within CCNA_00907at 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.052 kb on + strandat 988.060 kb on - strandat 988.060 kb on - strandat 988.062 kb on + strandat 988.070 kb on - strandat 988.102 kb on + strandat 988.121 kb on + strandat 988.129 kb on - strandat 988.129 kb on - strandat 988.130 kb on - strandat 988.136 kb on + strandat 988.165 kb on + strand, within CCNA_00908at 988.165 kb on + strand, within CCNA_00908at 988.165 kb on + strand, within CCNA_00908at 988.173 kb on - strand, within CCNA_00908at 988.178 kb on - strand, within CCNA_00908at 988.181 kb on + strand, within CCNA_00908at 988.189 kb on - strand, within CCNA_00908at 988.189 kb on - strand, within CCNA_00908at 988.200 kb on + strand, within CCNA_00908at 988.203 kb on - strand, within CCNA_00908at 988.208 kb on - strand, within CCNA_00908at 988.238 kb on + strand, within CCNA_00908at 988.341 kb on + strand, within CCNA_00908at 988.360 kb on - strand, within CCNA_00908at 988.376 kb on + strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.386 kb on + strand, within CCNA_00908at 988.386 kb on + strand, within CCNA_00908at 988.395 kb on + strand, within CCNA_00908at 988.404 kb on + strand, within CCNA_00908at 988.404 kb on + strand, within CCNA_00908at 988.404 kb on + strand, within CCNA_00908at 988.456 kb on + strand, within CCNA_00908at 988.456 kb on + strand, within CCNA_00908at 988.456 kb on + strand, within CCNA_00908at 988.562 kb on - strand, within CCNA_00908at 988.575 kb on + strand, within CCNA_00908at 988.583 kb on - strand, within CCNA_00908at 988.621 kb on + strand, within CCNA_00908at 988.634 kb on + strand, within CCNA_00908at 988.636 kb on - strand, within CCNA_00908at 988.726 kb on + strand, within CCNA_00908at 988.741 kb on + strand, within CCNA_00908at 988.741 kb on + strand, within CCNA_00908at 988.795 kb on + strand, within CCNA_00908at 988.803 kb on - strand, within CCNA_00908at 988.837 kb on + strand, within CCNA_00908at 988.883 kb on - strand, within CCNA_00908at 988.927 kb on + strand, within CCNA_00908at 988.940 kb on - strand, within CCNA_00908at 988.950 kb on - strand, within CCNA_00908at 988.950 kb on - strand, within CCNA_00908at 988.967 kb on + strand, within CCNA_00908at 988.968 kb on - strand, within CCNA_00908at 989.049 kb on + strand, within CCNA_00908at 989.052 kb on - strand, within CCNA_00908at 989.098 kb on + strandat 989.098 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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986,380 - +0.6
986,391 + +0.2
986,399 - +0.1
986,399 - +0.4
986,419 + +1.2
986,426 + -0.4
986,427 - +0.2
986,464 + +0.9
986,471 - +0.4
986,488 - +0.2
986,527 - +0.8
986,542 - +0.4
986,561 + CCNA_00906 0.10 -0.6
986,570 - CCNA_00906 0.11 +0.0
986,570 - CCNA_00906 0.11 -0.3
986,601 + CCNA_00906 0.15 -0.2
986,601 + CCNA_00906 0.15 -0.7
986,609 - CCNA_00906 0.16 +0.4
986,610 - CCNA_00906 0.16 -0.4
986,674 + CCNA_00906 0.23 +0.7
986,697 - CCNA_00906 0.25 +0.1
986,769 - CCNA_00906 0.33 +0.4
986,823 - CCNA_00906 0.39 +0.7
986,832 + CCNA_00906 0.40 -0.1
986,899 - CCNA_00906 0.47 +0.3
986,905 + CCNA_00906 0.48 +0.1
986,976 - CCNA_00906 0.56 +0.6
986,980 - CCNA_00906 0.56 -0.3
986,980 - CCNA_00906 0.56 -0.0
986,980 - CCNA_00906 0.56 +0.3
987,001 + CCNA_00906 0.58 -1.3
987,009 - CCNA_00906 0.59 -0.2
987,009 - CCNA_00906 0.59 +0.6
987,022 + CCNA_00906 0.61 +0.3
987,022 + CCNA_00906 0.61 -1.8
987,047 - CCNA_00906 0.63 +0.8
987,074 + CCNA_00906 0.66 -0.8
987,075 + CCNA_00906 0.67 +0.0
987,082 - CCNA_00906 0.67 -0.4
987,087 + CCNA_00906 0.68 -2.8
987,087 + CCNA_00906 0.68 -0.2
987,118 + CCNA_00906 0.71 +1.2
987,130 - CCNA_00906 0.73 +0.1
987,135 - CCNA_00906 0.73 -0.1
987,135 - CCNA_00906 0.73 -0.6
987,135 - CCNA_00906 0.73 -1.1
987,142 + CCNA_00906 0.74 +0.2
987,149 + CCNA_00906 0.75 -0.2
987,152 - CCNA_00906 0.75 -0.5
987,152 - CCNA_00906 0.75 -0.2
987,164 + CCNA_00906 0.76 -0.4
987,231 - CCNA_00906 0.84 -1.1
987,231 - CCNA_00906 0.84 -0.0
987,231 - CCNA_00906 0.84 +0.8
987,259 + CCNA_00906 0.87 -0.2
987,259 + CCNA_00906 0.87 -0.2
987,261 - CCNA_00906 0.87 -1.5
987,267 - CCNA_00906 0.88 +0.5
987,267 - CCNA_00906 0.88 +0.1
987,267 - CCNA_00906 0.88 +0.2
987,267 - CCNA_00906 0.88 -0.3
987,269 + CCNA_00906 0.88 -0.2
987,269 - CCNA_00906 0.88 -0.6
987,275 + CCNA_00906 0.88 -0.0
987,282 - CCNA_00906 0.89 -1.5
987,305 + -0.8
987,305 + -0.3
987,311 + -0.2
987,339 + -0.6
987,405 + -1.4
987,405 + -1.0
987,405 + -0.7
987,413 - +0.2
987,413 - +0.1
987,464 + CCNA_00907 0.12 +0.3
987,464 + CCNA_00907 0.12 -0.4
987,494 - CCNA_00907 0.16 +1.3
987,513 - CCNA_00907 0.19 +1.2
987,524 + CCNA_00907 0.20 -0.7
987,535 - CCNA_00907 0.22 +1.8
987,535 - CCNA_00907 0.22 +1.2
987,540 - CCNA_00907 0.22 -0.4
987,544 + CCNA_00907 0.23 +0.1
987,549 + CCNA_00907 0.24 +0.5
987,559 + CCNA_00907 0.25 +0.8
987,572 - CCNA_00907 0.27 -0.8
987,641 - CCNA_00907 0.36 +0.8
987,652 + CCNA_00907 0.38 -0.7
987,669 + CCNA_00907 0.40 +0.4
987,677 + CCNA_00907 0.41 -0.8
987,806 + CCNA_00907 0.59 +0.2
987,814 - CCNA_00907 0.60 +0.1
987,823 + CCNA_00907 0.61 +0.2
987,823 + CCNA_00907 0.61 -0.4
987,823 + CCNA_00907 0.61 +1.0
987,830 - CCNA_00907 0.62 +0.2
987,831 - CCNA_00907 0.62 +1.0
987,879 + CCNA_00907 0.69 -0.0
987,879 + CCNA_00907 0.69 +1.9
987,879 + CCNA_00907 0.69 +1.4
987,886 - CCNA_00907 0.70 +1.2
987,886 - CCNA_00907 0.70 +0.2
987,887 - CCNA_00907 0.70 +2.4
987,900 - CCNA_00907 0.72 +0.7
987,956 + CCNA_00907 0.79 -0.2
987,956 + CCNA_00907 0.79 +0.1
987,956 + CCNA_00907 0.79 -0.1
987,964 - CCNA_00907 0.81 +0.5
987,970 + CCNA_00907 0.81 -0.6
988,001 - CCNA_00907 0.86 -0.6
988,005 - CCNA_00907 0.86 +0.1
988,021 - CCNA_00907 0.88 +0.3
988,052 + -0.6
988,052 + +1.2
988,052 + +0.8
988,052 + -1.3
988,052 + -0.8
988,052 + +0.9
988,052 + -0.2
988,060 - -0.1
988,060 - +0.5
988,062 + +0.1
988,070 - +0.4
988,102 + -0.5
988,121 + +1.5
988,129 - -0.1
988,129 - +0.9
988,130 - -0.5
988,136 + +0.1
988,165 + CCNA_00908 0.11 -0.1
988,165 + CCNA_00908 0.11 -0.9
988,165 + CCNA_00908 0.11 -0.3
988,173 - CCNA_00908 0.11 +0.6
988,178 - CCNA_00908 0.12 -0.6
988,181 + CCNA_00908 0.12 -0.3
988,189 - CCNA_00908 0.13 -0.6
988,189 - CCNA_00908 0.13 +0.3
988,200 + CCNA_00908 0.14 +0.3
988,203 - CCNA_00908 0.14 +0.7
988,208 - CCNA_00908 0.15 +0.3
988,238 + CCNA_00908 0.17 +0.4
988,341 + CCNA_00908 0.26 -0.6
988,360 - CCNA_00908 0.28 -0.8
988,376 + CCNA_00908 0.29 +0.4
988,384 - CCNA_00908 0.30 +0.9
988,384 - CCNA_00908 0.30 +0.4
988,384 - CCNA_00908 0.30 +1.0
988,384 - CCNA_00908 0.30 -0.9
988,384 - CCNA_00908 0.30 -1.0
988,386 + CCNA_00908 0.30 +0.1
988,386 + CCNA_00908 0.30 +0.5
988,395 + CCNA_00908 0.31 -0.5
988,404 + CCNA_00908 0.32 +0.2
988,404 + CCNA_00908 0.32 -1.6
988,404 + CCNA_00908 0.32 +0.0
988,456 + CCNA_00908 0.36 +0.2
988,456 + CCNA_00908 0.36 +0.6
988,456 + CCNA_00908 0.36 -0.4
988,562 - CCNA_00908 0.46 -0.8
988,575 + CCNA_00908 0.47 -0.3
988,583 - CCNA_00908 0.47 -0.6
988,621 + CCNA_00908 0.51 -0.5
988,634 + CCNA_00908 0.52 -0.2
988,636 - CCNA_00908 0.52 +0.3
988,726 + CCNA_00908 0.60 -0.4
988,741 + CCNA_00908 0.61 +0.5
988,741 + CCNA_00908 0.61 +0.1
988,795 + CCNA_00908 0.66 -0.1
988,803 - CCNA_00908 0.67 -0.1
988,837 + CCNA_00908 0.70 +0.5
988,883 - CCNA_00908 0.74 -0.0
988,927 + CCNA_00908 0.78 +0.4
988,940 - CCNA_00908 0.79 +0.4
988,950 - CCNA_00908 0.80 -0.4
988,950 - CCNA_00908 0.80 +0.2
988,967 + CCNA_00908 0.81 +0.4
988,968 - CCNA_00908 0.81 +0.6
989,049 + CCNA_00908 0.88 -0.5
989,052 - CCNA_00908 0.89 -0.1
989,098 + -0.2
989,098 + +0.1

Or see this region's nucleotide sequence